Wall clock time and date at job start Tue Mar 31 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47490 * 2 1 4 4 C 1.35992 * 116.99986 * 179.97438 * 3 2 1 5 5 C 1.38572 * 120.07300 * 359.97438 * 4 3 2 6 6 C 1.38245 * 119.99607 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.92136 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46941 * 83.67227 * 7 6 5 9 9 C 1.46903 * 111.00276 * 198.65885 * 8 7 6 10 10 C 1.50693 * 109.47663 * 163.28406 * 9 8 7 11 11 H 1.08011 * 119.99674 * 357.68846 * 10 9 8 12 12 C 1.37869 * 120.00233 * 177.68297 * 10 9 8 13 13 N 1.31515 * 120.00380 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00066 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47139 * 60.00164 * 14 12 10 16 16 H 1.48504 * 109.47220 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47138 * 300.00138 * 14 12 10 18 18 C 1.46908 * 111.00207 * 74.70770 * 8 7 6 19 19 C 1.53000 * 109.46983 * 70.52624 * 18 8 7 20 20 C 1.52996 * 109.47247 * 190.53037 * 18 8 7 21 21 C 1.38253 * 120.14888 * 359.97438 * 6 5 4 22 22 C 1.38237 * 120.14693 * 359.76322 * 21 6 5 23 23 C 1.38568 * 119.99994 * 0.51138 * 22 21 6 24 24 O 1.35996 * 120.07716 * 179.74528 * 23 22 21 25 25 H 1.09004 * 109.46860 * 300.00802 * 1 2 3 26 26 H 1.09003 * 109.46933 * 59.99870 * 1 2 3 27 27 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47235 * 239.99580 * 2 1 3 29 29 H 1.09003 * 109.46933 * 120.00130 * 2 1 3 30 30 H 1.07997 * 120.00059 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46797 * 203.67130 * 7 6 5 32 32 H 1.08994 * 109.47475 * 323.67207 * 7 6 5 33 33 H 1.09002 * 109.46882 * 283.28677 * 9 8 7 34 34 H 1.09002 * 109.46661 * 43.28582 * 9 8 7 35 35 H 0.96998 * 120.00245 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46586 * 310.52464 * 18 8 7 37 37 H 1.09001 * 109.47182 * 68.12377 * 19 18 8 38 38 H 1.09002 * 109.46585 * 188.12135 * 19 18 8 39 39 H 1.09002 * 109.47005 * 308.12131 * 19 18 8 40 40 H 1.09000 * 109.47288 * 51.70367 * 20 18 8 41 41 H 1.08997 * 109.47167 * 171.70972 * 20 18 8 42 42 H 1.09009 * 109.46833 * 291.70798 * 20 18 8 43 43 H 1.07999 * 119.92057 * 180.02562 * 21 6 5 44 44 H 1.08001 * 120.00095 * 180.26461 * 22 21 6 45 45 H 0.96698 * 113.99307 * 269.72878 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2001 0.4274 0.0016 6 6 5.5703 0.6103 0.0027 7 6 6.4883 -0.5850 0.0044 8 7 6.6666 -1.0673 -1.3716 9 6 7.1683 -2.4479 -1.3847 10 6 6.9544 -3.0473 -2.7506 11 1 6.4583 -2.4742 -3.5201 12 6 7.3920 -4.3271 -3.0182 13 7 7.9957 -5.0250 -2.0811 14 14 7.1275 -5.0698 -4.7117 15 1 7.8138 -4.2356 -5.7307 16 1 7.6844 -6.4461 -4.7412 17 1 5.6734 -5.1182 -5.0093 18 6 7.5554 -0.1771 -2.1305 19 6 8.9870 -0.3213 -1.6102 20 6 7.5108 -0.5545 -3.6125 21 6 6.1005 1.8871 0.0022 22 6 5.2627 2.9867 -0.0043 23 6 3.8882 2.8105 0.0003 24 8 3.0626 3.8911 -0.0009 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5711 0.0016 31 1 7.4557 -0.2995 0.4177 32 1 6.0525 -1.3769 0.6134 33 1 8.2327 -2.4500 -1.1496 34 1 6.6308 -3.0368 -0.6413 35 1 8.3032 -5.9255 -2.2692 36 1 7.2265 0.8548 -2.0083 37 1 9.3671 -1.3113 -1.8620 38 1 9.6189 0.4384 -2.0704 39 1 8.9947 -0.1934 -0.5278 40 1 6.4740 -0.5948 -3.9462 41 1 8.0510 0.1926 -4.1940 42 1 7.9759 -1.5303 -3.7531 43 1 7.1715 2.0257 0.0026 44 1 5.6793 3.9831 -0.0090 45 1 2.8231 4.2040 0.8822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579083178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:04 Heat of formation + Delta-G solvation = -49.925687 kcal Electronic energy + Delta-G solvation = -24253.082111 eV Core-core repulsion = 20850.449732 eV Total energy + Delta-G solvation = -3402.632379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33495 -38.27092 -37.66794 -36.20786 -32.64925 -31.98093 -31.56057 -29.85669 -29.26487 -27.31573 -26.17454 -24.60965 -23.76859 -22.21276 -21.60974 -21.26237 -18.76631 -18.38106 -17.30465 -16.46607 -16.13541 -16.07331 -15.28128 -15.18894 -14.65469 -14.29013 -14.12335 -13.75311 -13.63022 -13.27737 -13.00774 -12.69724 -12.66241 -12.26335 -12.08627 -11.75363 -11.65995 -11.40359 -11.31257 -11.15750 -11.01578 -10.83438 -10.66738 -10.65448 -10.57249 -10.41723 -10.25412 -10.15210 -9.40280 -8.98562 -8.56924 -8.38097 -7.93791 -7.19730 -6.01577 -3.98498 1.36531 1.53538 3.20768 3.32879 3.37483 3.40425 3.75002 4.28574 4.43492 4.85827 4.89421 4.95514 5.08600 5.12557 5.22358 5.31093 5.32827 5.49101 5.55799 5.70418 5.72267 5.77682 5.82830 5.89205 5.90926 6.02223 6.06317 6.15213 6.36148 6.37208 6.41158 6.55874 6.63764 6.75798 6.80654 6.87729 7.00514 7.23614 7.31400 7.42249 7.49785 7.81455 7.85053 8.13146 8.22295 8.56502 9.06113 9.61526 11.08921 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004440 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.364130 B = 6305.290532 C = 7404.105148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.311 6.311 4 C 0.104 3.896 5 C -0.172 4.172 6 C -0.024 4.024 7 C 0.083 3.917 8 N -0.524 5.524 9 C 0.186 3.814 10 C -0.502 4.502 11 H 0.074 0.926 12 C 0.053 3.947 13 N -0.900 5.900 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.089 3.911 19 C -0.183 4.183 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.108 4.108 23 C 0.058 3.942 24 O -0.488 6.488 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.006 0.994 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.027 0.973 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 13.026 6.971 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.225 6.225 4 C 0.058 3.942 5 C -0.191 4.191 6 C -0.025 4.025 7 C -0.045 4.045 8 N -0.248 5.248 9 C 0.061 3.939 10 C -0.540 4.540 11 H 0.092 0.908 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.019 4.019 19 C -0.241 4.241 20 C -0.202 4.202 21 C -0.158 4.158 22 C -0.127 4.127 23 C 0.012 3.988 24 O -0.297 6.297 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.152 12.901 6.148 16.453 hybrid contribution 0.747 -0.719 0.026 1.038 sum -7.404 12.182 6.174 15.535 Atomic orbital electron populations 1.21751 0.92917 1.02768 1.03189 1.22820 0.95651 0.82068 1.01944 1.86086 1.18562 1.29151 1.88723 1.19391 0.82771 0.93580 0.98446 1.21070 0.93559 0.97854 1.06614 1.19837 0.93415 0.94815 0.94408 1.21103 0.96200 0.94102 0.93101 1.62383 1.48835 1.04559 1.09067 1.19874 0.94282 0.81789 0.97912 1.21403 1.36544 0.98527 0.97549 0.90766 1.24971 0.95730 0.97083 0.96964 1.69946 1.40127 1.11062 1.32910 0.86659 0.78535 0.78180 0.84656 1.20221 1.21493 1.20279 1.21458 0.89722 0.95613 0.95142 1.22451 0.99002 1.02742 0.99950 1.22243 1.01579 1.02811 0.93597 1.20866 0.99650 0.91525 1.03785 1.21117 0.91439 0.99529 1.00568 1.17670 0.88729 0.83731 1.08640 1.84905 1.66882 1.45099 1.32778 0.91840 0.91606 0.90375 0.91469 0.92056 0.84863 0.94192 0.90536 0.97590 0.95937 0.93016 0.92241 0.90897 0.93614 0.93739 0.92856 0.95412 0.88583 0.85835 0.85212 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.59 5.46 37.16 0.20 0.79 16 3 O -0.31 -4.49 9.92 -34.22 -0.34 -4.83 16 4 C 0.10 1.57 6.70 -39.12 -0.26 1.31 16 5 C -0.17 -2.67 8.71 -39.46 -0.34 -3.02 16 6 C -0.02 -0.38 4.99 -104.61 -0.52 -0.90 16 7 C 0.08 1.45 5.02 -4.98 -0.02 1.42 16 8 N -0.52 -10.79 4.42 -229.52 -1.01 -11.80 16 9 C 0.19 4.57 4.48 -4.98 -0.02 4.55 16 10 C -0.50 -13.30 6.67 -34.45 -0.23 -13.53 16 11 H 0.07 1.95 5.36 -52.48 -0.28 1.67 16 12 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 13 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 14 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 C 0.09 1.70 2.83 -67.71 -0.19 1.51 16 19 C -0.18 -3.27 8.32 37.16 0.31 -2.96 16 20 C -0.15 -2.89 7.69 37.16 0.29 -2.61 16 21 C -0.14 -1.96 8.38 -39.58 -0.33 -2.29 16 22 C -0.11 -1.42 9.98 -39.46 -0.39 -1.82 16 23 C 0.06 0.82 6.72 -39.12 -0.26 0.56 16 24 O -0.49 -6.33 13.29 -34.23 -0.45 -6.78 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.83 7.67 -51.93 -0.40 0.44 16 29 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 30 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 31 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 32 H 0.08 1.34 7.64 -51.93 -0.40 0.94 16 33 H 0.01 0.16 5.69 -51.93 -0.30 -0.13 16 34 H 0.02 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.06 1.06 6.31 -51.93 -0.33 0.73 16 37 H 0.07 1.50 6.49 -51.93 -0.34 1.17 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.74 6.26 -51.93 -0.33 0.42 16 40 H 0.05 1.10 7.47 -51.93 -0.39 0.71 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 2.17 5.45 -51.92 -0.28 1.89 16 43 H 0.12 1.58 8.02 -52.49 -0.42 1.15 16 44 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.38 3.05 9.06 45.56 0.41 3.46 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -30.36 353.63 -8.42 -38.77 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.15 Total: 4.93 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.50 Total: -16.60 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.28 Total: -36.99 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.79 Total: -11.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.36 -8.42 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579083178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.151 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds