Wall clock time and date at job start Tue Mar 31 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47490 * 2 1 4 4 C 1.35992 * 116.99986 * 179.97438 * 3 2 1 5 5 C 1.38572 * 120.07300 * 359.97438 * 4 3 2 6 6 C 1.38245 * 119.99607 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.92136 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46941 * 83.67227 * 7 6 5 9 9 C 1.46903 * 111.00276 * 198.65885 * 8 7 6 10 10 C 1.50693 * 109.47663 * 163.28406 * 9 8 7 11 11 H 1.08011 * 119.99674 * 357.68846 * 10 9 8 12 12 C 1.37869 * 120.00233 * 177.68297 * 10 9 8 13 13 N 1.31515 * 120.00380 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00066 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47139 * 60.00164 * 14 12 10 16 16 H 1.48504 * 109.47220 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47138 * 300.00138 * 14 12 10 18 18 C 1.46908 * 111.00207 * 74.70770 * 8 7 6 19 19 C 1.53000 * 109.46983 * 70.52624 * 18 8 7 20 20 C 1.52996 * 109.47247 * 190.53037 * 18 8 7 21 21 C 1.38253 * 120.14888 * 359.97438 * 6 5 4 22 22 C 1.38237 * 120.14693 * 359.76322 * 21 6 5 23 23 C 1.38568 * 119.99994 * 0.51138 * 22 21 6 24 24 O 1.35996 * 120.07716 * 179.74528 * 23 22 21 25 25 H 1.09004 * 109.46860 * 300.00802 * 1 2 3 26 26 H 1.09003 * 109.46933 * 59.99870 * 1 2 3 27 27 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47235 * 239.99580 * 2 1 3 29 29 H 1.09003 * 109.46933 * 120.00130 * 2 1 3 30 30 H 1.07997 * 120.00059 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46797 * 203.67130 * 7 6 5 32 32 H 1.08994 * 109.47475 * 323.67207 * 7 6 5 33 33 H 1.09002 * 109.46882 * 283.28677 * 9 8 7 34 34 H 1.09002 * 109.46661 * 43.28582 * 9 8 7 35 35 H 0.96998 * 120.00245 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46586 * 310.52464 * 18 8 7 37 37 H 1.09001 * 109.47182 * 68.12377 * 19 18 8 38 38 H 1.09002 * 109.46585 * 188.12135 * 19 18 8 39 39 H 1.09002 * 109.47005 * 308.12131 * 19 18 8 40 40 H 1.09000 * 109.47288 * 51.70367 * 20 18 8 41 41 H 1.08997 * 109.47167 * 171.70972 * 20 18 8 42 42 H 1.09009 * 109.46833 * 291.70798 * 20 18 8 43 43 H 1.07999 * 119.92057 * 180.02562 * 21 6 5 44 44 H 1.08001 * 120.00095 * 180.26461 * 22 21 6 45 45 H 0.96698 * 113.99307 * 269.72878 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2001 0.4274 0.0016 6 6 5.5703 0.6103 0.0027 7 6 6.4883 -0.5850 0.0044 8 7 6.6666 -1.0673 -1.3716 9 6 7.1683 -2.4479 -1.3847 10 6 6.9544 -3.0473 -2.7506 11 1 6.4583 -2.4742 -3.5201 12 6 7.3920 -4.3271 -3.0182 13 7 7.9957 -5.0250 -2.0811 14 14 7.1275 -5.0698 -4.7117 15 1 7.8138 -4.2356 -5.7307 16 1 7.6844 -6.4461 -4.7412 17 1 5.6734 -5.1182 -5.0093 18 6 7.5554 -0.1771 -2.1305 19 6 8.9870 -0.3213 -1.6102 20 6 7.5108 -0.5545 -3.6125 21 6 6.1005 1.8871 0.0022 22 6 5.2627 2.9867 -0.0043 23 6 3.8882 2.8105 0.0003 24 8 3.0626 3.8911 -0.0009 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5711 0.0016 31 1 7.4557 -0.2995 0.4177 32 1 6.0525 -1.3769 0.6134 33 1 8.2327 -2.4500 -1.1496 34 1 6.6308 -3.0368 -0.6413 35 1 8.3032 -5.9255 -2.2692 36 1 7.2265 0.8548 -2.0083 37 1 9.3671 -1.3113 -1.8620 38 1 9.6189 0.4384 -2.0704 39 1 8.9947 -0.1934 -0.5278 40 1 6.4740 -0.5948 -3.9462 41 1 8.0510 0.1926 -4.1940 42 1 7.9759 -1.5303 -3.7531 43 1 7.1715 2.0257 0.0026 44 1 5.6793 3.9831 -0.0090 45 1 2.8231 4.2040 0.8822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579083178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:03 Heat of formation + Delta-G solvation = -69.426090 kcal Electronic energy + Delta-G solvation = -24253.927712 eV Core-core repulsion = 20850.449732 eV Total energy + Delta-G solvation = -3403.477980 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43443 -39.69050 -38.77429 -37.39947 -34.66985 -33.17405 -32.65481 -31.19216 -30.58971 -28.98281 -27.75805 -26.00007 -24.82230 -24.06847 -22.65740 -22.43919 -20.27682 -19.50306 -18.60483 -18.21242 -17.31600 -17.15260 -16.77287 -16.50643 -16.29054 -15.68114 -15.47456 -14.96879 -14.83466 -14.71358 -14.22844 -14.02522 -13.91207 -13.42692 -13.37603 -13.17253 -13.06642 -12.91469 -12.76089 -12.60091 -12.50772 -12.48119 -12.20173 -12.13584 -11.94813 -11.81620 -11.61307 -11.45571 -11.19571 -10.88537 -10.47153 -9.70219 -9.07146 -8.84280 -8.11258 -6.14054 0.24511 0.43066 1.42803 1.43911 1.51357 2.21571 2.43672 2.64074 3.20738 3.27514 3.48458 3.76828 3.96155 4.02381 4.11905 4.16702 4.23210 4.35181 4.37546 4.41802 4.54248 4.57053 4.60502 4.71244 4.89010 4.90002 4.92645 4.95837 5.01614 5.06426 5.16492 5.17606 5.27104 5.28117 5.33200 5.35442 5.60446 5.68054 5.75782 5.79609 5.79971 6.18282 6.30781 6.48935 6.73293 6.92751 6.97693 7.49907 8.98794 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004440 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.364130 B = 6305.290532 C = 7404.105148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 O -0.321 6.321 4 C 0.090 3.910 5 C -0.182 4.182 6 C -0.039 4.039 7 C 0.087 3.913 8 N -0.533 5.533 9 C 0.202 3.798 10 C -0.503 4.503 11 H 0.074 0.926 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.088 3.912 19 C -0.173 4.173 20 C -0.140 4.140 21 C -0.136 4.136 22 C -0.101 4.101 23 C 0.058 3.942 24 O -0.497 6.497 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.051 0.949 32 H 0.065 0.935 33 H -0.012 1.012 34 H -0.007 1.007 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.141 0.859 44 H 0.160 0.840 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 15.282 6.596 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.236 6.236 4 C 0.044 3.956 5 C -0.201 4.201 6 C -0.040 4.040 7 C -0.040 4.040 8 N -0.257 5.257 9 C 0.076 3.924 10 C -0.542 4.542 11 H 0.092 0.908 12 C -0.195 4.195 13 N -0.578 5.578 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.021 4.021 19 C -0.232 4.232 20 C -0.198 4.198 21 C -0.155 4.155 22 C -0.119 4.119 23 C 0.012 3.988 24 O -0.309 6.309 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.006 0.994 34 H 0.011 0.989 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.159 0.841 44 H 0.177 0.823 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.498 15.185 5.785 18.338 hybrid contribution 0.788 -1.311 0.195 1.542 sum -7.710 13.874 5.980 16.961 Atomic orbital electron populations 1.21766 0.90814 1.04053 1.03419 1.23008 0.97315 0.81120 1.01610 1.86075 1.18284 1.30472 1.88735 1.19573 0.83056 0.93971 0.99000 1.21053 0.93844 0.97885 1.07332 1.19683 0.93032 0.94828 0.96457 1.21054 0.97156 0.94661 0.91161 1.62273 1.49073 1.03023 1.11367 1.19510 0.92712 0.83996 0.96154 1.21693 1.35607 0.98612 0.98264 0.90799 1.25733 0.95695 0.97674 1.00386 1.70071 1.41550 1.11346 1.34846 0.85690 0.78512 0.77345 0.80636 1.19269 1.21377 1.19858 1.21544 0.90170 0.96049 0.94287 1.22328 0.98484 1.01564 1.00792 1.22119 1.00771 1.02024 0.94855 1.21038 1.00708 0.90820 1.02897 1.21386 0.90773 1.00586 0.99157 1.17880 0.89456 0.83711 1.07729 1.84838 1.66725 1.44432 1.34874 0.91029 0.91888 0.88573 0.92772 0.91488 0.85724 0.93105 0.91695 0.99431 0.98851 0.93149 0.90085 0.94360 0.90833 0.92755 0.94076 0.92543 0.91700 0.84083 0.82274 0.74106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.04 1.03 5.46 71.98 0.39 1.43 16 3 O -0.32 -9.08 9.92 -79.59 -0.79 -9.87 16 4 C 0.09 2.64 6.70 22.57 0.15 2.79 16 5 C -0.18 -5.64 8.71 22.35 0.19 -5.45 16 6 C -0.04 -1.20 4.99 -19.86 -0.10 -1.30 16 7 C 0.09 3.04 5.02 85.56 0.43 3.47 16 8 N -0.53 -22.10 4.42 -880.06 -3.89 -25.99 16 9 C 0.20 10.28 4.48 85.55 0.38 10.66 16 10 C -0.50 -27.31 6.67 25.60 0.17 -27.14 16 11 H 0.07 3.95 5.36 -2.90 -0.02 3.93 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.94 -55.42 13.29 21.44 0.28 -55.14 16 14 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 C 0.09 3.22 2.83 44.91 0.13 3.35 16 19 C -0.17 -5.96 8.32 71.98 0.60 -5.36 16 20 C -0.14 -5.46 7.69 71.98 0.55 -4.91 16 21 C -0.14 -3.46 8.38 22.27 0.19 -3.27 16 22 C -0.10 -2.33 9.98 22.35 0.22 -2.11 16 23 C 0.06 1.52 6.72 22.57 0.15 1.67 16 24 O -0.50 -11.57 13.29 -79.63 -1.06 -12.63 16 25 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.38 7.67 -2.39 -0.02 1.36 16 29 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 30 H 0.12 3.96 6.30 -2.91 -0.02 3.94 16 31 H 0.05 1.65 6.03 -2.38 -0.01 1.63 16 32 H 0.06 2.36 7.64 -2.39 -0.02 2.35 16 33 H -0.01 -0.65 5.69 -2.39 -0.01 -0.66 16 34 H -0.01 -0.37 7.68 -2.39 -0.02 -0.39 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.08 2.67 6.31 -2.39 -0.02 2.65 16 37 H 0.04 1.58 6.49 -2.39 -0.02 1.56 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.74 6.26 -2.39 -0.01 1.72 16 40 H 0.04 1.66 7.47 -2.39 -0.02 1.64 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.94 5.45 -2.38 -0.01 2.92 16 43 H 0.14 3.07 8.02 -2.91 -0.02 3.05 16 44 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.40 5.34 9.06 -74.06 -0.67 4.67 16 Total: -1.00 -65.98 353.63 1.57 -64.41 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.32 Total: 20.51 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 4.67 Total: -27.30 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -3.60 Total: -81.13 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.85 Total: -22.50 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.98 1.57 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579083178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.011 kcal (2) G-P(sol) polarization free energy of solvation -65.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds