Wall clock time and date at job start Tue Mar 31 2020 07:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47044 * 240.00087 * 3 2 1 5 5 H 1.48505 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 119.99944 * 3 2 1 7 7 C 1.37872 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47065 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47204 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99866 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00244 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00368 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47323 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47060 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47060 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47323 * 180.02562 * 19 18 17 21 21 C 1.36890 * 126.39537 * 270.03108 * 20 19 18 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 H 0.96996 * 119.99759 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47259 * 59.99669 * 9 7 2 27 27 H 1.09002 * 109.47241 * 300.00262 * 9 7 2 28 28 H 1.09002 * 109.47343 * 60.00448 * 10 9 7 29 29 H 1.08998 * 109.47519 * 299.99826 * 10 9 7 30 30 H 1.08998 * 109.47370 * 59.99731 * 11 10 9 31 31 H 1.09002 * 109.47266 * 300.00241 * 11 10 9 32 32 H 1.08994 * 109.47815 * 59.99909 * 12 11 10 33 33 H 1.09007 * 109.47039 * 299.99305 * 12 11 10 34 34 H 0.97000 * 119.99796 * 359.97438 * 15 13 12 35 35 H 1.09006 * 109.47135 * 59.99509 * 16 15 13 36 36 H 1.09002 * 109.47081 * 299.99898 * 16 15 13 37 37 H 1.09002 * 109.47343 * 60.00330 * 17 16 15 38 38 H 1.08998 * 109.47519 * 299.99708 * 17 16 15 39 39 H 1.09006 * 109.47212 * 60.00013 * 18 17 16 40 40 H 1.09002 * 109.47266 * 300.00241 * 18 17 16 41 41 H 1.09002 * 109.47343 * 60.00395 * 19 18 17 42 42 H 1.08998 * 109.47519 * 299.99774 * 19 18 17 43 43 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 44 44 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 45 45 H 1.08006 * 125.64594 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1499 -0.0031 13 6 1.7212 -7.4551 -0.0044 14 8 0.5084 -7.4551 -0.0043 15 7 2.3950 -8.6222 -0.0046 16 6 1.6626 -9.8910 -0.0053 17 6 2.6569 -11.0539 -0.0060 18 6 1.8919 -12.3789 -0.0061 19 6 2.8861 -13.5418 -0.0075 20 7 2.1537 -14.8106 -0.0082 21 6 1.7476 -15.5146 1.0933 22 6 1.1128 -16.6130 0.6415 23 7 1.1312 -16.5808 -0.6994 24 6 1.7538 -15.5045 -1.0954 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 0.8533 -5.0442 -0.8922 31 1 0.8541 -5.0455 0.8877 32 1 3.1014 -6.0927 0.8868 33 1 3.1012 -6.0918 -0.8932 34 1 3.3650 -8.6222 -0.0043 35 1 1.0361 -9.9485 -0.8955 36 1 1.0357 -9.9491 0.8845 37 1 3.2836 -10.9967 0.8839 38 1 3.2834 -10.9957 -0.8960 39 1 1.2648 -12.4365 -0.8959 40 1 1.2656 -12.4370 0.8841 41 1 3.5135 -13.4846 0.8820 42 1 3.5120 -13.4837 -0.8980 43 1 1.9059 -15.2417 2.1262 44 1 0.6639 -17.3827 1.2517 45 1 1.9203 -15.2157 -2.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588302930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:21 Heat of formation + Delta-G solvation = -13.004332 kcal Electronic energy + Delta-G solvation = -21400.744081 eV Core-core repulsion = 18032.005482 eV Total energy + Delta-G solvation = -3368.738598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.43117 -39.75731 -37.00299 -35.11879 -34.73216 -32.75499 -32.44346 -30.02440 -29.77963 -28.30339 -25.74673 -24.19449 -22.33581 -22.00710 -21.75091 -21.26467 -20.22034 -19.97134 -17.89343 -16.76374 -16.53701 -16.35830 -16.08789 -15.66102 -15.47083 -14.87147 -14.46069 -14.39110 -14.22837 -13.80855 -13.73192 -13.52417 -13.14657 -12.74079 -12.49311 -12.42223 -12.01594 -11.96362 -11.69527 -11.59163 -11.38913 -10.97470 -10.54392 -10.53770 -10.41818 -10.38385 -10.08764 -9.84790 -9.62079 -9.25611 -9.22953 -8.99556 -8.94114 -8.30484 -5.95342 -3.98111 1.62440 2.28501 2.68268 2.79298 3.04398 3.34795 3.39307 3.41384 3.95938 4.04037 4.30531 4.33282 4.44528 4.48454 4.50944 4.65309 4.76696 4.92457 4.99789 5.04343 5.07071 5.28918 5.29614 5.34491 5.38327 5.39918 5.53973 5.61858 5.81979 5.84459 6.12416 6.23012 6.29397 6.31947 6.53447 6.73586 6.82842 7.00900 7.19116 7.36255 7.67031 7.73443 7.89636 8.05839 8.21379 8.47480 9.09374 9.65501 11.15897 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.070896 B = 0.001511 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.847267 B =18526.730709 C =18699.296249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.534 6.534 15 N -0.741 5.741 16 C 0.119 3.881 17 C -0.128 4.128 18 C -0.133 4.133 19 C 0.105 3.895 20 N -0.459 5.459 21 C -0.057 4.057 22 C -0.031 4.031 23 N -0.498 5.498 24 C 0.181 3.819 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 -30.969 0.994 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.298 3.702 14 O -0.410 6.410 15 N -0.395 5.395 16 C -0.005 4.005 17 C -0.166 4.166 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.142 5.142 21 C -0.190 4.190 22 C -0.179 4.179 23 N -0.216 5.216 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.190 0.810 44 H 0.186 0.814 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.306 -31.313 0.482 32.399 hybrid contribution 1.290 1.546 0.580 2.095 sum 9.596 -29.767 1.062 31.294 Atomic orbital electron populations 1.69967 1.06044 1.26618 1.50800 1.25038 0.94839 0.99206 0.95431 0.86670 0.79575 0.83263 0.78531 1.20291 1.21304 1.20301 1.21247 0.92943 0.91228 1.50601 0.92813 1.19095 0.94064 0.91263 0.97326 1.21652 0.99083 0.94013 1.00054 1.21456 0.97034 0.92731 1.02970 1.21795 1.00092 0.91980 1.03965 1.21134 0.88467 0.85617 0.74952 1.90715 1.14299 1.87679 1.48305 1.46089 1.10218 1.05702 1.77477 1.21250 0.94493 0.82167 1.02612 1.21702 0.98484 0.93130 1.03301 1.21878 0.98335 0.92734 1.04215 1.21947 0.94258 0.80618 1.04959 1.45628 1.42703 1.18857 1.07038 1.22773 1.06892 0.96434 0.92857 1.22339 1.04923 0.99396 0.91256 1.70306 1.19397 1.19622 1.12235 1.25037 1.00708 0.90640 0.93762 0.92990 0.96588 0.96587 0.93479 0.93478 0.91803 0.91820 0.89137 0.89138 0.76658 0.91514 0.91550 0.90774 0.90701 0.90549 0.90618 0.88836 0.88598 0.80953 0.81413 0.77991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 11 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 13 C 0.51 6.76 7.83 -10.99 -0.09 6.67 16 14 O -0.53 -9.58 15.98 5.56 0.09 -9.49 16 15 N -0.74 -6.39 5.56 -60.29 -0.33 -6.72 16 16 C 0.12 0.89 5.67 -4.04 -0.02 0.86 16 17 C -0.13 -0.43 5.33 -26.73 -0.14 -0.57 16 18 C -0.13 -0.45 5.54 -26.73 -0.15 -0.60 16 19 C 0.10 0.28 6.15 -4.04 -0.02 0.25 16 20 N -0.46 -2.60 2.75 -118.58 -0.33 -2.93 16 21 C -0.06 -0.36 11.58 -16.56 -0.19 -0.55 16 22 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 23 N -0.50 -5.00 11.25 -14.66 -0.16 -5.17 16 24 C 0.18 1.30 12.56 -90.38 -1.14 0.16 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 2.15 8.47 -40.82 -0.35 1.81 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -37.28 380.00 -10.14 -47.42 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -7.92 Total: -4.96 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.93 Total: -13.94 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.09 Total: -41.57 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.28 -10.14 -47.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588302930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.415 kcal (2) G-P(sol) polarization free energy of solvation -37.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds