Wall clock time and date at job start Tue Mar 31 2020 07:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47044 * 240.00087 * 3 2 1 5 5 H 1.48505 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 119.99944 * 3 2 1 7 7 C 1.37872 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47065 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47204 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99866 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00244 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00368 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47323 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47060 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47060 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47323 * 180.02562 * 19 18 17 21 21 C 1.36890 * 126.39537 * 270.03108 * 20 19 18 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 H 0.96996 * 119.99759 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47259 * 59.99669 * 9 7 2 27 27 H 1.09002 * 109.47241 * 300.00262 * 9 7 2 28 28 H 1.09002 * 109.47343 * 60.00448 * 10 9 7 29 29 H 1.08998 * 109.47519 * 299.99826 * 10 9 7 30 30 H 1.08998 * 109.47370 * 59.99731 * 11 10 9 31 31 H 1.09002 * 109.47266 * 300.00241 * 11 10 9 32 32 H 1.08994 * 109.47815 * 59.99909 * 12 11 10 33 33 H 1.09007 * 109.47039 * 299.99305 * 12 11 10 34 34 H 0.97000 * 119.99796 * 359.97438 * 15 13 12 35 35 H 1.09006 * 109.47135 * 59.99509 * 16 15 13 36 36 H 1.09002 * 109.47081 * 299.99898 * 16 15 13 37 37 H 1.09002 * 109.47343 * 60.00330 * 17 16 15 38 38 H 1.08998 * 109.47519 * 299.99708 * 17 16 15 39 39 H 1.09006 * 109.47212 * 60.00013 * 18 17 16 40 40 H 1.09002 * 109.47266 * 300.00241 * 18 17 16 41 41 H 1.09002 * 109.47343 * 60.00395 * 19 18 17 42 42 H 1.08998 * 109.47519 * 299.99774 * 19 18 17 43 43 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 44 44 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 45 45 H 1.08006 * 125.64594 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1499 -0.0031 13 6 1.7212 -7.4551 -0.0044 14 8 0.5084 -7.4551 -0.0043 15 7 2.3950 -8.6222 -0.0046 16 6 1.6626 -9.8910 -0.0053 17 6 2.6569 -11.0539 -0.0060 18 6 1.8919 -12.3789 -0.0061 19 6 2.8861 -13.5418 -0.0075 20 7 2.1537 -14.8106 -0.0082 21 6 1.7476 -15.5146 1.0933 22 6 1.1128 -16.6130 0.6415 23 7 1.1312 -16.5808 -0.6994 24 6 1.7538 -15.5045 -1.0954 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 0.8533 -5.0442 -0.8922 31 1 0.8541 -5.0455 0.8877 32 1 3.1014 -6.0927 0.8868 33 1 3.1012 -6.0918 -0.8932 34 1 3.3650 -8.6222 -0.0043 35 1 1.0361 -9.9485 -0.8955 36 1 1.0357 -9.9491 0.8845 37 1 3.2836 -10.9967 0.8839 38 1 3.2834 -10.9957 -0.8960 39 1 1.2648 -12.4365 -0.8959 40 1 1.2656 -12.4370 0.8841 41 1 3.5135 -13.4846 0.8820 42 1 3.5120 -13.4837 -0.8980 43 1 1.9059 -15.2417 2.1262 44 1 0.6639 -17.3827 1.2517 45 1 1.9203 -15.2157 -2.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588302930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:20 Heat of formation + Delta-G solvation = -36.388636 kcal Electronic energy + Delta-G solvation = -21401.758100 eV Core-core repulsion = 18032.005482 eV Total energy + Delta-G solvation = -3369.752618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.89384 -40.76904 -37.53137 -36.60817 -35.58476 -34.60157 -33.18008 -31.49790 -30.36010 -29.04994 -27.30766 -25.04854 -23.74203 -22.52044 -22.24443 -21.82149 -21.64565 -21.10289 -18.42047 -18.32441 -17.72173 -17.15045 -16.98611 -16.54852 -16.48371 -16.02747 -15.62681 -15.11647 -14.87855 -14.78312 -14.52541 -14.32224 -14.18876 -13.65340 -13.63043 -13.53826 -13.33195 -12.92504 -12.78947 -12.59017 -12.37471 -12.32708 -12.15163 -12.11280 -11.68270 -11.36907 -11.35262 -11.17466 -10.92922 -10.79051 -10.53841 -10.51652 -10.09492 -9.43427 -8.17993 -6.30529 1.16663 1.40928 1.44939 1.52836 1.66623 1.92216 2.24155 2.27487 2.42851 3.14646 3.70280 3.76726 3.85071 3.90963 4.00122 4.08399 4.12153 4.17100 4.26505 4.38509 4.53127 4.54542 4.64304 4.65529 4.70673 4.72957 4.83026 4.86216 4.88250 4.97168 5.15133 5.20266 5.26242 5.34317 5.37596 5.39377 5.49211 5.58146 5.78588 5.84770 5.88498 6.25618 6.33213 6.59347 6.87898 7.17088 7.31238 7.39268 8.93955 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.070896 B = 0.001511 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.847267 B =18526.730709 C =18699.296249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.128 4.128 13 C 0.507 3.493 14 O -0.593 6.593 15 N -0.717 5.717 16 C 0.115 3.885 17 C -0.112 4.112 18 C -0.127 4.127 19 C 0.105 3.895 20 N -0.457 5.457 21 C -0.051 4.051 22 C -0.065 4.065 23 N -0.546 5.546 24 C 0.173 3.827 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.420 0.580 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.199 0.801 44 H 0.174 0.826 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.411 -30.983 1.163 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.296 3.704 14 O -0.474 6.474 15 N -0.371 5.371 16 C -0.009 4.009 17 C -0.150 4.150 18 C -0.166 4.166 19 C -0.016 4.016 20 N -0.139 5.139 21 C -0.185 4.185 22 C -0.212 4.212 23 N -0.265 5.265 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.216 0.784 44 H 0.192 0.808 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 12.160 -31.360 0.654 33.641 hybrid contribution 0.066 1.526 0.532 1.617 sum 12.226 -29.834 1.186 32.263 Atomic orbital electron populations 1.70132 1.08096 1.27787 1.51799 1.26094 0.95765 1.03739 0.94734 0.85434 0.78165 0.77672 0.79357 1.18878 1.21129 1.18886 1.21740 0.93790 0.92227 1.50409 0.91479 1.19068 0.94742 0.93902 0.94264 1.21451 0.97792 0.92681 1.01393 1.21255 0.97596 0.93871 1.00872 1.21670 0.98839 0.89387 1.06819 1.21242 0.87729 0.87016 0.74462 1.90704 1.16791 1.88502 1.51391 1.45875 1.11271 1.04813 1.75133 1.21354 0.95485 0.83049 1.01047 1.21595 0.97439 0.90756 1.05199 1.21785 0.98382 0.93326 1.03110 1.22153 0.93834 0.78605 1.07022 1.45816 1.42263 1.19447 1.06389 1.23182 1.05519 0.95644 0.94123 1.22654 1.06495 1.00912 0.91126 1.70238 1.21252 1.21627 1.13417 1.25519 1.00107 0.90219 0.95141 0.92892 0.99794 0.99786 0.91963 0.91972 0.94060 0.94067 0.86179 0.86184 0.74208 0.93209 0.93268 0.88863 0.88704 0.91700 0.91886 0.86929 0.86443 0.78363 0.80836 0.75622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.48 4.50 30.59 0.14 -3.34 16 12 C -0.13 -2.92 5.70 29.85 0.17 -2.75 16 13 C 0.51 12.81 7.83 87.66 0.69 13.49 16 14 O -0.59 -21.84 15.98 -3.02 -0.05 -21.89 16 15 N -0.72 -10.55 5.56 -463.06 -2.57 -13.12 16 16 C 0.11 1.54 5.67 86.38 0.49 2.03 16 17 C -0.11 -0.37 5.33 30.59 0.16 -0.21 16 18 C -0.13 -0.58 5.54 30.59 0.17 -0.41 16 19 C 0.11 0.21 6.15 86.38 0.53 0.74 16 20 N -0.46 -4.35 2.75 -529.07 -1.46 -5.80 16 21 C -0.05 -0.58 11.58 83.08 0.96 0.39 16 22 C -0.07 -1.08 11.87 83.52 0.99 -0.09 16 23 N -0.55 -11.18 11.25 -200.31 -2.25 -13.43 16 24 C 0.17 2.33 12.56 180.27 2.26 4.59 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.42 2.74 8.47 -92.71 -0.79 1.96 16 35 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -86.05 380.00 3.71 -82.34 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 0.16 Total: 3.32 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 7.57 Total: -19.24 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -6.00 Total: -91.07 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -86.05 3.71 -82.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588302930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.954 kcal (2) G-P(sol) polarization free energy of solvation -86.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds