Wall clock time and date at job start Tue Mar 31 2020 07:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 C 1.50706 * 109.46700 * 119.99437 * 2 1 3 5 5 H 1.07995 * 119.99914 * 120.00440 * 4 2 1 6 6 C 1.37876 * 120.00257 * 300.00039 * 4 2 1 7 7 N 1.31517 * 119.99880 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00089 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46826 * 90.00411 * 8 6 4 10 10 H 1.48499 * 109.47124 * 210.00116 * 8 6 4 11 11 H 1.48492 * 109.47256 * 330.00430 * 8 6 4 12 12 C 1.52992 * 109.47516 * 239.99406 * 2 1 3 13 13 N 1.46498 * 109.47312 * 60.00039 * 12 2 1 14 14 C 1.34772 * 120.00402 * 180.02562 * 13 12 2 15 15 O 1.21584 * 119.99827 * 354.92276 * 14 13 12 16 16 N 1.34774 * 120.00248 * 174.92680 * 14 13 12 17 17 C 1.46928 * 120.62993 * 4.74073 * 16 14 13 18 18 C 1.52756 * 109.01171 * 233.58669 * 17 16 14 19 19 C 1.53043 * 109.38369 * 305.58807 * 18 17 16 20 20 C 1.53041 * 109.53452 * 61.24090 * 19 18 17 21 21 C 1.53007 * 109.52091 * 178.66751 * 20 19 18 22 22 C 1.47192 * 109.50059 * 58.58746 * 20 19 18 23 23 N 6.61581 * 67.00929 * 244.96390 * 2 1 3 24 24 C 1.46925 * 120.63593 * 185.02545 * 16 14 13 25 25 H 1.09004 * 109.46958 * 60.00631 * 1 2 3 26 26 H 1.09004 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47788 * 300.00139 * 1 2 3 28 28 H 1.08998 * 109.47553 * 59.99000 * 3 2 1 29 29 H 1.09000 * 109.46922 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46684 * 299.99536 * 3 2 1 31 31 H 0.96995 * 120.00081 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47463 * 180.02562 * 12 2 1 33 33 H 1.09004 * 109.47173 * 300.00313 * 12 2 1 34 34 H 0.97000 * 119.99733 * 0.02562 * 13 12 2 35 35 H 1.08994 * 109.58728 * 353.42635 * 17 16 14 36 36 H 1.09006 * 109.58623 * 113.84638 * 17 16 14 37 37 H 1.08995 * 109.56853 * 185.55581 * 18 17 16 38 38 H 1.09001 * 109.38699 * 65.51483 * 18 17 16 39 39 H 1.08997 * 109.46280 * 301.21770 * 19 18 17 40 40 H 1.09001 * 109.44939 * 181.24732 * 19 18 17 41 41 H 1.09009 * 109.46947 * 179.84957 * 21 20 19 42 42 H 1.08991 * 109.47271 * 299.84755 * 21 20 19 43 43 H 1.09001 * 109.47317 * 59.85830 * 21 20 19 44 44 H 1.08998 * 109.59172 * 246.15977 * 24 16 14 45 45 H 1.09008 * 109.58316 * 6.58126 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.6302 -0.5436 4.4120 10 1 1.3441 -0.9486 5.1124 11 1 2.4878 -2.5650 3.7125 12 6 2.0400 -0.7213 -1.2491 13 7 1.5518 -0.0309 -2.4454 14 6 1.8770 -0.4917 -3.6694 15 8 2.6496 -1.4237 -3.7825 16 7 1.3459 0.0805 -4.7679 17 6 0.4933 1.2717 -4.6537 18 6 -0.8307 1.0063 -5.3679 19 6 -0.5523 0.5680 -6.8075 20 6 0.2624 -0.7276 -6.7995 21 6 0.5121 -1.1833 -8.2386 22 6 -0.4815 -1.7713 -6.0758 23 7 -1.0541 -2.5774 -5.5181 24 6 1.6034 -0.4785 -6.1021 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9562 -0.8901 31 1 0.7085 1.1615 3.4843 32 1 3.1300 -0.7217 -1.2488 33 1 1.6767 -1.7490 -1.2490 34 1 0.9944 0.7580 -2.3565 35 1 0.3032 1.4854 -3.6019 36 1 0.9912 2.1233 -5.1175 37 1 -1.4308 1.9162 -5.3743 38 1 -1.3718 0.2173 -4.8456 39 1 0.0098 1.3473 -7.3222 40 1 -1.4969 0.3997 -7.3248 41 1 1.0947 -2.1047 -8.2320 42 1 -0.4422 -1.3605 -8.7345 43 1 1.0621 -0.4097 -8.7745 44 1 2.1937 0.2274 -6.6864 45 1 2.1454 -1.4193 -6.0057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590948982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:03 Heat of formation + Delta-G solvation = -8.982341 kcal Electronic energy + Delta-G solvation = -24619.902934 eV Core-core repulsion = 21251.338743 eV Total energy + Delta-G solvation = -3368.564192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58794 -38.56986 -36.40718 -35.86766 -34.08327 -33.04526 -32.12835 -30.74942 -27.31480 -26.07718 -25.71320 -25.36951 -24.24228 -23.24041 -22.03765 -19.74625 -18.89799 -17.95173 -16.98670 -16.01148 -15.66963 -15.46250 -15.10323 -14.81870 -14.47430 -14.14411 -13.90985 -13.62318 -13.56043 -13.41306 -12.90460 -12.75301 -12.58900 -12.39967 -12.29387 -12.15392 -11.93683 -11.78892 -11.40297 -11.31065 -11.18651 -11.01953 -10.85003 -10.79112 -10.67087 -10.37089 -10.18386 -9.75287 -9.61711 -9.28984 -8.77791 -8.74781 -8.39066 -8.15267 -6.00495 -4.10141 2.73083 2.76181 2.87641 3.29955 3.36750 3.41558 3.54614 3.69547 4.21503 4.37111 4.41474 4.46286 4.54256 4.70039 4.92852 5.11861 5.22253 5.26406 5.32106 5.33333 5.44873 5.47468 5.57161 5.60351 5.72119 5.79608 5.94698 6.20458 6.38380 6.50077 6.52109 6.80676 6.82854 6.91710 7.04729 7.09894 7.21466 7.39640 7.56082 7.57236 7.71451 8.02535 8.13537 8.36745 8.42531 8.89238 9.00135 9.55487 11.01046 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.003646 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.035876 B = 7678.483731 C = 7832.381762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.732 5.732 14 C 0.703 3.297 15 O -0.595 6.595 16 N -0.638 5.638 17 C 0.110 3.890 18 C -0.143 4.143 19 C -0.105 4.105 20 C 0.019 3.981 21 C -0.139 4.139 22 C 0.215 3.785 23 N -0.426 5.426 24 C 0.143 3.857 25 H 0.003 0.997 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.004 0.996 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.393 0.607 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 5.436 -21.081 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.388 5.388 14 C 0.404 3.596 15 O -0.474 6.474 16 N -0.377 5.377 17 C -0.013 4.013 18 C -0.181 4.181 19 C -0.143 4.143 20 C 0.015 3.985 21 C -0.198 4.198 22 C -0.104 4.104 23 N -0.100 5.100 24 C 0.018 3.982 25 H 0.022 0.978 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.231 0.769 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.172 3.608 -20.084 20.651 hybrid contribution 0.144 0.240 0.775 0.824 sum -3.029 3.847 -19.309 19.920 Atomic orbital electron populations 1.21810 0.97807 0.99149 0.99852 1.18363 0.92754 0.92804 0.90560 1.21808 0.98608 0.98296 0.99889 1.20985 1.31388 1.12092 0.89849 0.92414 1.24873 0.94847 0.94949 0.98828 1.69802 1.36695 1.22836 1.23186 0.86566 0.78530 0.80196 0.82563 1.20699 1.21287 1.19900 1.21604 0.98025 0.95336 0.82443 1.45673 1.55498 1.33026 1.04573 1.15954 0.80823 0.82142 0.80672 1.90874 1.39241 1.31630 1.85608 1.47246 1.53735 1.31135 1.05566 1.21551 0.90509 0.87690 1.01575 1.21938 0.97705 1.02722 0.95733 1.21628 1.00288 0.94813 0.97602 1.18819 0.94824 0.90238 0.94655 1.21822 1.03131 1.02736 0.92085 1.28780 0.93906 0.93993 0.93727 1.81193 1.09694 1.10667 1.08485 1.21454 0.93208 1.01409 0.82167 0.97783 0.95501 0.89600 0.89622 0.95395 0.97717 0.93042 0.92788 0.93131 0.76939 0.89982 0.90850 0.89748 0.91473 0.89393 0.90687 0.91289 0.91354 0.90135 0.89713 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.81 9.35 55.43 0.52 -23.29 16 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.32 4.51 -4.05 -0.02 3.30 16 13 N -0.73 -13.74 4.87 -65.23 -0.32 -14.06 16 14 C 0.70 12.90 8.30 -86.93 -0.72 12.18 16 15 O -0.59 -13.16 15.79 5.29 0.08 -13.08 16 16 N -0.64 -8.37 2.67 -178.77 -0.48 -8.85 16 17 C 0.11 1.08 6.40 -3.93 -0.03 1.05 16 18 C -0.14 -1.17 5.82 -26.83 -0.16 -1.33 16 19 C -0.10 -0.65 4.69 -26.69 -0.13 -0.77 16 20 C 0.02 0.16 0.72 -157.18 -0.11 0.05 16 21 C -0.14 -0.73 8.44 37.16 0.31 -0.42 16 22 C 0.21 2.79 12.21 -20.79 -0.25 2.54 16 23 N -0.43 -7.07 18.53 42.12 0.78 -6.29 16 24 C 0.14 1.46 5.07 -3.71 -0.02 1.44 16 25 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 6.64 3.62 -40.82 -0.15 6.49 16 35 H 0.08 0.89 5.57 -51.93 -0.29 0.60 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.27 7.03 -51.92 -0.37 0.90 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -32.64 351.04 -7.24 -39.88 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.13 Total: 2.47 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.96 Total: 1.92 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.50 Total: -52.49 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.64 -7.24 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.894 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds