Wall clock time and date at job start Tue Mar 31 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 C 1.50706 * 109.46700 * 119.99437 * 2 1 3 5 5 H 1.07995 * 119.99914 * 120.00440 * 4 2 1 6 6 C 1.37876 * 120.00257 * 300.00039 * 4 2 1 7 7 N 1.31517 * 119.99880 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00089 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46826 * 90.00411 * 8 6 4 10 10 H 1.48499 * 109.47124 * 210.00116 * 8 6 4 11 11 H 1.48492 * 109.47256 * 330.00430 * 8 6 4 12 12 C 1.52992 * 109.47516 * 239.99406 * 2 1 3 13 13 N 1.46498 * 109.47312 * 60.00039 * 12 2 1 14 14 C 1.34772 * 120.00402 * 180.02562 * 13 12 2 15 15 O 1.21584 * 119.99827 * 354.92276 * 14 13 12 16 16 N 1.34774 * 120.00248 * 174.92680 * 14 13 12 17 17 C 1.46928 * 120.62993 * 4.74073 * 16 14 13 18 18 C 1.52756 * 109.01171 * 233.58669 * 17 16 14 19 19 C 1.53043 * 109.38369 * 305.58807 * 18 17 16 20 20 C 1.53041 * 109.53452 * 61.24090 * 19 18 17 21 21 C 1.53007 * 109.52091 * 178.66751 * 20 19 18 22 22 C 1.47192 * 109.50059 * 58.58746 * 20 19 18 23 23 N 6.61581 * 67.00929 * 244.96390 * 2 1 3 24 24 C 1.46925 * 120.63593 * 185.02545 * 16 14 13 25 25 H 1.09004 * 109.46958 * 60.00631 * 1 2 3 26 26 H 1.09004 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47788 * 300.00139 * 1 2 3 28 28 H 1.08998 * 109.47553 * 59.99000 * 3 2 1 29 29 H 1.09000 * 109.46922 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46684 * 299.99536 * 3 2 1 31 31 H 0.96995 * 120.00081 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47463 * 180.02562 * 12 2 1 33 33 H 1.09004 * 109.47173 * 300.00313 * 12 2 1 34 34 H 0.97000 * 119.99733 * 0.02562 * 13 12 2 35 35 H 1.08994 * 109.58728 * 353.42635 * 17 16 14 36 36 H 1.09006 * 109.58623 * 113.84638 * 17 16 14 37 37 H 1.08995 * 109.56853 * 185.55581 * 18 17 16 38 38 H 1.09001 * 109.38699 * 65.51483 * 18 17 16 39 39 H 1.08997 * 109.46280 * 301.21770 * 19 18 17 40 40 H 1.09001 * 109.44939 * 181.24732 * 19 18 17 41 41 H 1.09009 * 109.46947 * 179.84957 * 21 20 19 42 42 H 1.08991 * 109.47271 * 299.84755 * 21 20 19 43 43 H 1.09001 * 109.47317 * 59.85830 * 21 20 19 44 44 H 1.08998 * 109.59172 * 246.15977 * 24 16 14 45 45 H 1.09008 * 109.58316 * 6.58126 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.6302 -0.5436 4.4120 10 1 1.3441 -0.9486 5.1124 11 1 2.4878 -2.5650 3.7125 12 6 2.0400 -0.7213 -1.2491 13 7 1.5518 -0.0309 -2.4454 14 6 1.8770 -0.4917 -3.6694 15 8 2.6496 -1.4237 -3.7825 16 7 1.3459 0.0805 -4.7679 17 6 0.4933 1.2717 -4.6537 18 6 -0.8307 1.0063 -5.3679 19 6 -0.5523 0.5680 -6.8075 20 6 0.2624 -0.7276 -6.7995 21 6 0.5121 -1.1833 -8.2386 22 6 -0.4815 -1.7713 -6.0758 23 7 -1.0541 -2.5774 -5.5181 24 6 1.6034 -0.4785 -6.1021 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9562 -0.8901 31 1 0.7085 1.1615 3.4843 32 1 3.1300 -0.7217 -1.2488 33 1 1.6767 -1.7490 -1.2490 34 1 0.9944 0.7580 -2.3565 35 1 0.3032 1.4854 -3.6019 36 1 0.9912 2.1233 -5.1175 37 1 -1.4308 1.9162 -5.3743 38 1 -1.3718 0.2173 -4.8456 39 1 0.0098 1.3473 -7.3222 40 1 -1.4969 0.3997 -7.3248 41 1 1.0947 -2.1047 -8.2320 42 1 -0.4422 -1.3605 -8.7345 43 1 1.0621 -0.4097 -8.7745 44 1 2.1937 0.2274 -6.6864 45 1 2.1454 -1.4193 -6.0057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:02 Heat of formation + Delta-G solvation = -29.428641 kcal Electronic energy + Delta-G solvation = -24620.789552 eV Core-core repulsion = 21251.338743 eV Total energy + Delta-G solvation = -3369.450810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69299 -39.74803 -38.15136 -37.01958 -35.32838 -34.51983 -32.89776 -32.58532 -28.14651 -27.61196 -27.41471 -27.06030 -25.63891 -24.01027 -22.86883 -21.10618 -20.67491 -19.23726 -17.88373 -17.85997 -17.05253 -16.68198 -16.57090 -15.90166 -15.59413 -15.34870 -15.13226 -14.91509 -14.71567 -14.60858 -14.32679 -14.06678 -13.99605 -13.50605 -13.23285 -13.18084 -13.06172 -12.92740 -12.75076 -12.70120 -12.60272 -12.48006 -12.28886 -12.16430 -11.94226 -11.78918 -11.53276 -11.44157 -11.33955 -11.08402 -10.74899 -10.42511 -10.13598 -9.44938 -8.04838 -6.20504 1.40872 1.43160 1.51715 1.65792 1.75795 1.80353 2.16039 2.43941 2.87367 3.04806 3.18596 3.69255 3.78932 3.86532 4.06590 4.25071 4.35069 4.46999 4.52708 4.54089 4.66046 4.73539 4.80292 4.90972 4.92171 4.93451 5.00119 5.03668 5.05025 5.09473 5.15017 5.21931 5.34142 5.35604 5.37977 5.55809 5.61281 5.62646 5.64761 5.92119 6.10337 6.17907 6.40691 6.58470 6.82643 6.99631 7.47012 7.57159 8.94424 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.003646 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.035876 B = 7678.483731 C = 7832.381762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.052 3.948 3 C -0.116 4.116 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.167 3.833 13 N -0.728 5.728 14 C 0.695 3.305 15 O -0.641 6.641 16 N -0.630 5.630 17 C 0.102 3.898 18 C -0.141 4.141 19 C -0.099 4.099 20 C 0.022 3.978 21 C -0.135 4.135 22 C 0.235 3.765 23 N -0.504 5.504 24 C 0.136 3.864 25 H 0.032 0.968 26 H 0.010 0.990 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.023 0.977 34 H 0.403 0.597 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.028 0.972 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 8.080 -23.750 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.052 3.948 3 C -0.173 4.173 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.043 3.957 13 N -0.386 5.386 14 C 0.396 3.604 15 O -0.524 6.524 16 N -0.368 5.368 17 C -0.020 4.020 18 C -0.179 4.179 19 C -0.137 4.137 20 C 0.017 3.983 21 C -0.193 4.193 22 C -0.083 4.083 23 N -0.179 5.179 24 C 0.012 3.988 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.243 0.757 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.047 0.953 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.399 6.299 -22.802 23.899 hybrid contribution 0.195 -0.562 1.537 1.648 sum -3.204 5.737 -21.266 22.258 Atomic orbital electron populations 1.21637 0.97389 0.98159 1.00211 1.18355 0.92993 0.93394 0.90093 1.21619 0.98003 0.97363 1.00351 1.21247 1.31891 1.12222 0.91624 0.93981 1.25439 0.95052 0.95615 1.00893 1.69893 1.36790 1.23240 1.23697 0.85745 0.78278 0.78898 0.79813 1.20143 1.20644 1.20411 1.21102 0.96834 0.94161 0.83627 1.45387 1.55859 1.33292 1.04054 1.16187 0.80764 0.81857 0.81559 1.90839 1.41419 1.33704 1.86397 1.47355 1.52863 1.31534 1.05013 1.21907 0.91208 0.87252 1.01595 1.21957 0.96556 1.02853 0.96528 1.21740 1.01259 0.94135 0.96541 1.19252 0.93413 0.90134 0.95483 1.21883 1.04051 1.03519 0.89865 1.29956 0.92534 0.93476 0.92290 1.81195 1.12416 1.13348 1.10978 1.21799 0.94578 1.01217 0.81204 0.94945 0.97116 0.91519 0.91687 0.96139 0.94551 0.92910 0.94390 0.95837 0.75694 0.91463 0.86779 0.86798 0.95347 0.85049 0.89293 0.92408 0.90477 0.86351 0.84975 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 2 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -29.19 8.01 25.60 0.21 -28.99 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.61 5.15 84.65 0.44 2.05 16 7 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 8 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 C 0.17 7.74 4.51 86.38 0.39 8.13 16 13 N -0.73 -27.53 4.87 -478.56 -2.33 -29.86 16 14 C 0.69 25.67 8.30 179.06 1.49 27.15 16 15 O -0.64 -29.38 15.79 -3.98 -0.06 -29.44 16 16 N -0.63 -15.39 2.67 -837.76 -2.24 -17.62 16 17 C 0.10 1.65 6.40 86.22 0.55 2.20 16 18 C -0.14 -1.81 5.82 30.53 0.18 -1.63 16 19 C -0.10 -0.73 4.69 30.62 0.14 -0.58 16 20 C 0.02 0.30 0.72 -53.91 -0.04 0.26 16 21 C -0.13 -0.90 8.44 71.98 0.61 -0.29 16 22 C 0.23 6.07 12.21 89.45 1.09 7.16 16 23 N -0.50 -17.45 18.53 19.99 0.37 -17.08 16 24 C 0.14 2.41 5.07 86.36 0.44 2.85 16 25 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 3.41 6.07 -2.39 -0.01 3.39 16 28 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 31 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.40 13.25 3.62 -92.71 -0.34 12.91 16 35 H 0.07 1.29 5.57 -2.39 -0.01 1.28 16 36 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.03 0.59 7.15 -2.39 -0.02 0.58 16 39 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.72 7.03 -2.38 -0.02 1.70 16 Total: -1.00 -77.00 351.04 5.24 -71.76 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.65 Total: 13.57 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.62 Total: 11.30 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.00 Total: -112.84 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.06 Total: -29.44 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -77.00 5.24 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.334 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds