Wall clock time and date at job start Tue Mar 31 2020 07:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47296 * 240.00599 * 3 2 1 5 5 H 1.48500 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46921 * 120.00310 * 3 2 1 7 7 C 1.37870 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00707 * 182.87949 * 7 2 1 9 9 C 1.50705 * 119.99482 * 2.87824 * 7 2 1 10 10 C 1.52993 * 115.55313 * 324.04791 * 9 7 2 11 11 N 1.46502 * 109.47120 * 306.01395 * 10 9 7 12 12 C 1.34777 * 119.99855 * 184.85877 * 11 10 9 13 13 O 1.21582 * 119.99967 * 5.73403 * 12 11 10 14 14 N 1.34779 * 119.99885 * 185.73811 * 12 11 10 15 15 C 1.44496 * 117.53843 * 355.78244 * 14 12 11 16 16 C 1.51111 * 113.98878 * 152.88803 * 15 14 12 17 17 C 1.52722 * 113.37413 * 38.80035 * 16 15 14 18 18 H 1.08994 * 113.77628 * 73.96168 * 17 16 15 19 19 C 1.56438 * 105.95083 * 199.39554 * 17 16 15 20 20 C 1.54710 * 102.33230 * 73.92153 * 19 17 16 21 21 N 1.48736 * 106.60560 * 24.52623 * 20 19 17 22 22 C 1.46850 * 107.33723 * 2.05155 * 21 20 19 23 23 H 1.08996 * 107.93080 * 87.01263 * 22 21 20 24 24 C 1.44914 * 117.53905 * 175.80067 * 14 12 11 25 25 C 1.53004 * 117.49698 * 109.72374 * 9 7 2 26 26 C 1.53001 * 117.49565 * 178.37961 * 9 7 2 27 27 H 0.97005 * 120.00314 * 5.00057 * 1 2 3 28 28 H 1.08994 * 109.47183 * 186.01257 * 10 9 7 29 29 H 1.08997 * 109.47045 * 66.01441 * 10 9 7 30 30 H 0.96999 * 120.00150 * 4.85840 * 11 10 9 31 31 H 1.09001 * 108.57901 * 274.06687 * 15 14 12 32 32 H 1.09001 * 108.58125 * 31.87857 * 15 14 12 33 33 H 1.09007 * 108.71170 * 277.78916 * 16 15 14 34 34 H 1.08991 * 108.69609 * 159.80241 * 16 15 14 35 35 H 1.09004 * 110.86542 * 192.18495 * 19 17 16 36 36 H 1.09003 * 110.87000 * 315.65474 * 19 17 16 37 37 H 1.09001 * 109.97752 * 143.94482 * 20 19 17 38 38 H 1.08999 * 109.97595 * 265.23435 * 20 19 17 39 39 H 1.00901 * 110.97418 * 123.49258 * 21 20 19 40 40 H 1.08994 * 108.73347 * 88.53545 * 24 14 12 41 41 H 1.08993 * 108.64031 * 330.39245 * 24 14 12 42 42 H 1.08999 * 117.49665 * 215.00254 * 25 9 7 43 43 H 1.08997 * 117.50027 * 0.02562 * 25 9 7 44 44 H 1.09007 * 117.49961 * 359.97438 * 26 9 7 45 45 H 1.08998 * 117.50180 * 144.97273 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0835 -1.1946 0.0464 9 6 1.2524 -2.4982 -0.0667 10 6 -0.0792 -2.5310 0.6859 11 7 0.1354 -2.1220 2.0762 12 6 -0.8832 -2.1693 2.9575 13 8 -1.9509 -2.6484 2.6274 14 7 -0.7184 -1.6855 4.2046 15 6 0.5977 -1.2139 4.5697 16 6 0.5932 -0.1490 5.6417 17 6 -0.4479 -0.3916 6.7325 18 1 -0.1843 -1.1947 7.4206 19 6 -0.6628 0.9888 7.4364 20 6 -1.4877 1.7703 6.3865 21 7 -2.1835 0.7551 5.5513 22 6 -1.8433 -0.5661 6.0945 23 1 -2.5572 -0.7980 6.8848 24 6 -1.8744 -1.6778 5.0785 25 6 1.3519 -3.3061 -1.3622 26 6 2.0757 -3.7874 -0.1022 27 1 -0.4851 0.8369 -0.0732 28 1 -0.4845 -3.5425 0.6632 29 1 -0.7822 -1.8471 0.2104 30 1 1.0106 -1.8172 2.3626 31 1 1.1843 -2.0615 4.9243 32 1 1.0797 -0.8068 3.6809 33 1 0.3926 0.8157 5.1755 34 1 1.5803 -0.1129 6.1025 35 1 -1.2260 0.8691 8.3620 36 1 0.2913 1.4811 7.6253 37 1 -2.2161 2.4093 6.8857 38 1 -0.8250 2.3740 5.7664 39 1 -3.1816 0.9032 5.5595 40 1 -1.9220 -2.6314 5.6043 41 1 -2.7713 -1.5698 4.4688 42 1 0.4685 -3.8609 -1.6784 43 1 1.9616 -2.8945 -2.1665 44 1 3.1614 -3.6921 -0.0782 45 1 1.6689 -4.6587 0.4109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591357577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:12 Heat of formation + Delta-G solvation = 14.839504 kcal Electronic energy + Delta-G solvation = -25161.918315 eV Core-core repulsion = 21794.387116 eV Total energy + Delta-G solvation = -3367.531199 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39841 -38.66636 -36.69597 -35.00816 -33.08872 -32.24268 -32.06787 -30.02598 -28.83749 -26.01868 -25.31993 -23.83849 -23.13601 -21.18213 -20.97486 -19.88448 -19.18896 -18.46944 -17.59248 -16.39408 -16.17409 -15.63856 -15.22255 -14.80236 -14.70472 -14.13690 -14.01577 -13.50151 -13.32807 -13.23981 -13.04272 -12.72991 -12.43969 -12.06444 -11.96241 -11.75071 -11.65248 -11.52394 -11.25008 -11.03569 -10.72522 -10.63857 -10.47179 -10.41973 -10.29238 -10.18532 -9.61602 -9.15935 -8.89199 -8.78082 -8.43204 -8.22293 -8.06802 -7.49612 -5.93024 -4.13556 3.24938 3.33588 3.33971 3.49052 4.03330 4.18752 4.33818 4.44533 4.52313 4.81931 4.82847 5.03731 5.08510 5.20805 5.31737 5.37016 5.44986 5.51262 5.54764 5.62159 5.77108 5.79782 5.91577 5.92858 6.03328 6.08662 6.13229 6.25170 6.39624 6.42611 6.63331 6.69569 6.83955 6.85124 6.96620 7.13294 7.28134 7.32654 7.40683 7.64452 7.75048 7.91557 8.06730 8.39038 8.83122 9.08280 9.49319 9.62614 10.95766 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.005590 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.885675 B = 5007.359673 C = 5933.746765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.182 3.818 11 N -0.700 5.700 12 C 0.699 3.301 13 O -0.612 6.612 14 N -0.615 5.615 15 C 0.120 3.880 16 C -0.116 4.116 17 C -0.089 4.089 18 H 0.093 0.907 19 C -0.142 4.142 20 C 0.046 3.954 21 N -0.669 5.669 22 C 0.073 3.927 23 H 0.047 0.953 24 C 0.156 3.844 25 C -0.198 4.198 26 C -0.212 4.212 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.108 0.892 30 H 0.395 0.605 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.339 0.661 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 1.679 15.001 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.037 3.963 10 C 0.059 3.941 11 N -0.353 5.353 12 C 0.400 3.600 13 O -0.492 6.492 14 N -0.353 5.353 15 C -0.004 4.004 16 C -0.154 4.154 17 C -0.108 4.108 18 H 0.111 0.889 19 C -0.181 4.181 20 C -0.083 4.083 21 N -0.299 5.299 22 C -0.038 4.038 23 H 0.065 0.935 24 C 0.031 3.969 25 C -0.237 4.237 26 C -0.249 4.249 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.125 0.875 30 H 0.232 0.768 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.250 1.509 14.271 14.405 hybrid contribution 0.447 1.141 0.853 1.493 sum -0.803 2.651 15.124 15.375 Atomic orbital electron populations 1.69882 1.05586 1.26793 1.47451 1.24986 0.94819 0.98892 0.94230 0.86683 0.79558 0.83269 0.78633 1.20333 1.21256 1.20199 1.20447 0.92399 0.88649 1.52136 0.92281 1.19239 0.93214 0.89752 0.94125 1.20906 0.97604 0.96525 0.79095 1.45015 1.11552 1.68587 1.10120 1.15961 0.84549 0.79512 0.80023 1.90796 1.26998 1.53110 1.78330 1.45823 1.09493 1.67004 1.13002 1.20468 0.84505 0.96508 0.98909 1.21272 0.98335 1.00339 0.95450 1.22327 0.94926 0.96959 0.96581 0.88884 1.23223 1.00698 0.96273 0.97857 1.22877 0.97369 0.94555 0.93507 1.61861 1.13450 1.01231 1.53338 1.21783 0.96400 0.90565 0.95030 0.93485 1.20067 0.89751 0.95273 0.91808 1.22931 1.01398 1.06658 0.92718 1.22939 0.98028 1.00293 1.03679 0.92653 0.96305 0.87473 0.76833 0.93660 0.90341 0.90550 0.91296 0.91714 0.90678 0.93212 0.90599 0.84476 0.93078 0.89862 0.91490 0.90294 0.90763 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.27 10.22 55.43 0.57 -22.71 16 2 C 0.08 1.95 5.31 -17.82 -0.09 1.85 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.50 -12.77 8.28 -34.44 -0.29 -13.06 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 0.90 2.06 -155.66 -0.32 0.58 16 10 C 0.18 4.52 4.64 -4.04 -0.02 4.51 16 11 N -0.70 -16.01 4.96 -65.23 -0.32 -16.33 16 12 C 0.70 15.80 8.14 -86.91 -0.71 15.09 16 13 O -0.61 -15.80 15.66 5.29 0.08 -15.71 16 14 N -0.62 -11.14 3.16 -184.85 -0.59 -11.72 16 15 C 0.12 1.87 5.80 -6.06 -0.04 1.83 16 16 C -0.12 -1.46 4.95 -27.82 -0.14 -1.60 16 17 C -0.09 -0.96 3.90 -88.16 -0.34 -1.31 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.14 -1.30 6.29 -23.98 -0.15 -1.45 16 20 C 0.05 0.48 6.78 -1.91 -0.01 0.47 16 21 N -0.67 -8.56 6.99 -104.85 -0.73 -9.30 16 22 C 0.07 0.89 2.94 -68.18 -0.20 0.69 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 C 0.16 2.44 5.79 -6.07 -0.04 2.41 16 25 C -0.20 -4.44 9.96 -26.69 -0.27 -4.71 16 26 C -0.21 -4.54 9.92 -26.69 -0.26 -4.81 16 27 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 28 H 0.02 0.47 8.04 -51.93 -0.42 0.05 16 29 H 0.11 3.01 5.94 -51.93 -0.31 2.70 16 30 H 0.40 8.68 5.45 -40.82 -0.22 8.46 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.38 6.04 -51.93 -0.31 1.07 16 33 H 0.08 1.09 6.27 -51.93 -0.33 0.76 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 39 H 0.34 3.86 8.91 -39.29 -0.35 3.51 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.50 7.19 -51.93 -0.37 1.13 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -29.68 345.67 -10.99 -40.67 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -7.31 Total: 14.18 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.87 Total: 0.50 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -1.07 Total: -60.06 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.68 -10.99 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.510 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds