Wall clock time and date at job start Tue Mar 31 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47296 * 240.00599 * 3 2 1 5 5 H 1.48500 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46921 * 120.00310 * 3 2 1 7 7 C 1.37870 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00707 * 182.87949 * 7 2 1 9 9 C 1.50705 * 119.99482 * 2.87824 * 7 2 1 10 10 C 1.52993 * 115.55313 * 324.04791 * 9 7 2 11 11 N 1.46502 * 109.47120 * 306.01395 * 10 9 7 12 12 C 1.34777 * 119.99855 * 184.85877 * 11 10 9 13 13 O 1.21582 * 119.99967 * 5.73403 * 12 11 10 14 14 N 1.34779 * 119.99885 * 185.73811 * 12 11 10 15 15 C 1.44496 * 117.53843 * 355.78244 * 14 12 11 16 16 C 1.51111 * 113.98878 * 152.88803 * 15 14 12 17 17 C 1.52722 * 113.37413 * 38.80035 * 16 15 14 18 18 H 1.08994 * 113.77628 * 73.96168 * 17 16 15 19 19 C 1.56438 * 105.95083 * 199.39554 * 17 16 15 20 20 C 1.54710 * 102.33230 * 73.92153 * 19 17 16 21 21 N 1.48736 * 106.60560 * 24.52623 * 20 19 17 22 22 C 1.46850 * 107.33723 * 2.05155 * 21 20 19 23 23 H 1.08996 * 107.93080 * 87.01263 * 22 21 20 24 24 C 1.44914 * 117.53905 * 175.80067 * 14 12 11 25 25 C 1.53004 * 117.49698 * 109.72374 * 9 7 2 26 26 C 1.53001 * 117.49565 * 178.37961 * 9 7 2 27 27 H 0.97005 * 120.00314 * 5.00057 * 1 2 3 28 28 H 1.08994 * 109.47183 * 186.01257 * 10 9 7 29 29 H 1.08997 * 109.47045 * 66.01441 * 10 9 7 30 30 H 0.96999 * 120.00150 * 4.85840 * 11 10 9 31 31 H 1.09001 * 108.57901 * 274.06687 * 15 14 12 32 32 H 1.09001 * 108.58125 * 31.87857 * 15 14 12 33 33 H 1.09007 * 108.71170 * 277.78916 * 16 15 14 34 34 H 1.08991 * 108.69609 * 159.80241 * 16 15 14 35 35 H 1.09004 * 110.86542 * 192.18495 * 19 17 16 36 36 H 1.09003 * 110.87000 * 315.65474 * 19 17 16 37 37 H 1.09001 * 109.97752 * 143.94482 * 20 19 17 38 38 H 1.08999 * 109.97595 * 265.23435 * 20 19 17 39 39 H 1.00901 * 110.97418 * 123.49258 * 21 20 19 40 40 H 1.08994 * 108.73347 * 88.53545 * 24 14 12 41 41 H 1.08993 * 108.64031 * 330.39245 * 24 14 12 42 42 H 1.08999 * 117.49665 * 215.00254 * 25 9 7 43 43 H 1.08997 * 117.50027 * 0.02562 * 25 9 7 44 44 H 1.09007 * 117.49961 * 359.97438 * 26 9 7 45 45 H 1.08998 * 117.50180 * 144.97273 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0835 -1.1946 0.0464 9 6 1.2524 -2.4982 -0.0667 10 6 -0.0792 -2.5310 0.6859 11 7 0.1354 -2.1220 2.0762 12 6 -0.8832 -2.1693 2.9575 13 8 -1.9509 -2.6484 2.6274 14 7 -0.7184 -1.6855 4.2046 15 6 0.5977 -1.2139 4.5697 16 6 0.5932 -0.1490 5.6417 17 6 -0.4479 -0.3916 6.7325 18 1 -0.1843 -1.1947 7.4206 19 6 -0.6628 0.9888 7.4364 20 6 -1.4877 1.7703 6.3865 21 7 -2.1835 0.7551 5.5513 22 6 -1.8433 -0.5661 6.0945 23 1 -2.5572 -0.7980 6.8848 24 6 -1.8744 -1.6778 5.0785 25 6 1.3519 -3.3061 -1.3622 26 6 2.0757 -3.7874 -0.1022 27 1 -0.4851 0.8369 -0.0732 28 1 -0.4845 -3.5425 0.6632 29 1 -0.7822 -1.8471 0.2104 30 1 1.0106 -1.8172 2.3626 31 1 1.1843 -2.0615 4.9243 32 1 1.0797 -0.8068 3.6809 33 1 0.3926 0.8157 5.1755 34 1 1.5803 -0.1129 6.1025 35 1 -1.2260 0.8691 8.3620 36 1 0.2913 1.4811 7.6253 37 1 -2.2161 2.4093 6.8857 38 1 -0.8250 2.3740 5.7664 39 1 -3.1816 0.9032 5.5595 40 1 -1.9220 -2.6314 5.6043 41 1 -2.7713 -1.5698 4.4688 42 1 0.4685 -3.8609 -1.6784 43 1 1.9616 -2.8945 -2.1665 44 1 3.1614 -3.6921 -0.0782 45 1 1.6689 -4.6587 0.4109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591357577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:11 Heat of formation + Delta-G solvation = -4.868101 kcal Electronic energy + Delta-G solvation = -25162.772901 eV Core-core repulsion = 21794.387116 eV Total energy + Delta-G solvation = -3368.385785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69468 -40.06874 -38.50338 -36.46512 -34.81603 -34.09369 -33.33198 -31.17678 -29.84075 -27.83477 -27.15640 -25.15949 -24.29029 -22.95133 -21.80866 -21.35972 -21.09609 -19.64320 -19.24547 -17.96973 -17.46154 -17.04960 -16.82996 -16.51993 -15.92229 -15.74190 -15.39198 -15.02971 -14.77845 -14.57374 -14.24988 -14.14678 -13.88285 -13.54896 -13.27763 -13.21193 -12.95273 -12.84153 -12.70327 -12.58809 -12.35454 -12.28812 -12.02210 -11.60152 -11.50810 -11.40365 -11.30981 -10.98497 -10.81671 -10.65401 -10.13593 -9.79725 -9.34869 -9.15216 -7.90898 -6.17021 1.43821 1.46465 1.53439 1.94716 2.41952 2.46049 3.03022 3.12186 3.38135 3.57500 3.65082 3.68745 3.92458 4.13312 4.21556 4.29652 4.35363 4.36929 4.43556 4.53949 4.57131 4.74687 4.76042 4.81269 4.81486 4.84430 4.88316 4.94468 4.97626 5.06804 5.10719 5.16597 5.22643 5.32395 5.44667 5.54854 5.62456 5.88505 5.96043 5.99319 6.04131 6.17280 6.40893 6.47461 6.84540 7.32936 7.47918 7.84960 8.95121 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.005590 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.885675 B = 5007.359673 C = 5933.746765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.036 3.964 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.196 3.804 11 N -0.698 5.698 12 C 0.689 3.311 13 O -0.652 6.652 14 N -0.607 5.607 15 C 0.116 3.884 16 C -0.111 4.111 17 C -0.085 4.085 18 H 0.116 0.884 19 C -0.129 4.129 20 C 0.045 3.955 21 N -0.699 5.699 22 C 0.074 3.926 23 H 0.074 0.926 24 C 0.151 3.849 25 C -0.198 4.198 26 C -0.186 4.186 27 H 0.255 0.745 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.400 0.600 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.343 0.657 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 1.954 17.484 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.071 3.929 11 N -0.350 5.350 12 C 0.390 3.610 13 O -0.536 6.536 14 N -0.344 5.344 15 C -0.008 4.008 16 C -0.149 4.149 17 C -0.104 4.104 18 H 0.134 0.866 19 C -0.167 4.167 20 C -0.084 4.084 21 N -0.330 5.330 22 C -0.037 4.037 23 H 0.091 0.909 24 C 0.027 3.973 25 C -0.236 4.236 26 C -0.223 4.223 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.237 0.763 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.380 1.798 16.796 16.896 hybrid contribution -0.070 1.019 0.042 1.022 sum 0.311 2.817 16.838 17.075 Atomic orbital electron populations 1.70084 1.06844 1.26672 1.48788 1.25591 0.95295 1.01594 0.94081 0.85790 0.78302 0.79605 0.78988 1.20091 1.22148 1.18895 1.20637 0.92426 0.89397 1.51663 0.92211 1.19279 0.93501 0.90743 0.95766 1.20555 0.97397 0.94891 0.80064 1.44885 1.11882 1.68721 1.09549 1.16251 0.83825 0.79580 0.81370 1.90753 1.28396 1.54938 1.79521 1.45917 1.11256 1.65569 1.11619 1.20651 0.82953 0.98164 0.98998 1.21259 1.00695 0.97850 0.95095 1.22392 0.92907 0.98858 0.96240 0.86580 1.23166 1.01262 0.94563 0.97744 1.22888 0.97630 0.94316 0.93534 1.61763 1.14116 1.02140 1.54934 1.21747 0.98437 0.89247 0.94231 0.90853 1.20280 0.87452 0.97826 0.91716 1.22953 1.01923 1.06163 0.92576 1.22927 0.98358 0.98847 1.02184 0.93558 0.97134 0.91131 0.76332 0.91606 0.92940 0.92606 0.88504 0.89628 0.89505 0.91417 0.92404 0.84012 0.91640 0.93127 0.90795 0.90215 0.89557 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.46 10.22 21.44 0.22 -49.25 16 2 C 0.04 1.88 5.31 84.65 0.45 2.33 16 3 Si 0.95 41.68 29.54 68.60 2.03 43.71 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.50 -25.74 8.28 25.60 0.21 -25.53 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.01 0.38 2.06 -52.93 -0.11 0.27 16 10 C 0.20 10.02 4.64 86.38 0.40 10.42 16 11 N -0.70 -32.80 4.96 -478.55 -2.37 -35.17 16 12 C 0.69 32.17 8.14 179.05 1.46 33.63 16 13 O -0.65 -35.22 15.66 -3.98 -0.06 -35.28 16 14 N -0.61 -22.10 3.16 -857.02 -2.71 -24.81 16 15 C 0.12 3.48 5.80 86.14 0.50 3.98 16 16 C -0.11 -2.55 4.95 29.89 0.15 -2.40 16 17 C -0.09 -1.55 3.90 -9.20 -0.04 -1.59 16 18 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 19 C -0.13 -1.87 6.29 32.38 0.20 -1.66 16 20 C 0.04 0.85 6.78 86.53 0.59 1.44 16 21 N -0.70 -17.27 6.99 -485.65 -3.39 -20.67 16 22 C 0.07 1.67 2.94 44.64 0.13 1.80 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 C 0.15 4.70 5.79 85.91 0.50 5.20 16 25 C -0.20 -8.72 9.96 30.62 0.30 -8.41 16 26 C -0.19 -7.69 9.92 30.62 0.30 -7.38 16 27 H 0.25 14.13 8.32 -92.70 -0.77 13.35 16 28 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 29 H 0.07 4.17 5.94 -2.39 -0.01 4.15 16 30 H 0.40 17.86 5.45 -92.71 -0.50 17.36 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.86 6.04 -2.39 -0.01 1.84 16 33 H 0.06 1.52 6.27 -2.38 -0.01 1.51 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.10 8.03 -2.39 -0.02 1.08 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.30 7.51 -2.39 -0.02 1.28 16 39 H 0.34 7.65 8.91 -89.69 -0.80 6.85 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.90 7.19 -2.39 -0.02 1.88 16 42 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 45 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -66.10 345.67 -1.55 -67.65 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.31 Total: 41.71 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.05 Total: 12.10 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -8.26 Total: -129.89 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.06 Total: -35.28 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -66.10 -1.55 -67.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.781 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds