Wall clock time and date at job start Tue Mar 31 2020 07:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47185 * 240.00387 * 3 2 1 5 5 H 1.48497 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47116 * 120.00600 * 3 2 1 7 7 C 1.37878 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00075 * 172.15676 * 7 2 1 9 9 C 1.50697 * 119.99903 * 352.14958 * 7 2 1 10 10 C 1.52999 * 115.55414 * 294.69040 * 9 7 2 11 11 N 1.46502 * 109.47246 * 275.65310 * 10 9 7 12 12 C 1.34769 * 119.99725 * 185.00217 * 11 10 9 13 13 O 1.21584 * 120.00492 * 5.13578 * 12 11 10 14 14 N 1.34782 * 120.00035 * 185.13684 * 12 11 10 15 15 C 1.46601 * 119.71442 * 355.06022 * 14 12 11 16 16 C 1.52862 * 110.75824 * 132.54819 * 15 14 12 17 17 C 1.51816 * 107.81975 * 51.12792 * 16 15 14 18 18 H 1.08999 * 110.30918 * 55.60432 * 17 16 15 19 19 C 1.53002 * 115.72258 * 182.55472 * 17 16 15 20 20 C 1.54962 * 104.00539 * 143.40139 * 19 17 16 21 21 N 1.49034 * 106.84459 * 357.74154 * 20 19 17 22 22 C 1.46760 * 104.35611 * 334.18811 * 21 20 19 23 23 H 1.08999 * 110.18407 * 286.01472 * 22 21 20 24 24 C 1.47770 * 119.72070 * 175.03870 * 14 12 11 25 25 C 1.52999 * 117.51991 * 80.39546 * 9 7 2 26 26 C 1.53000 * 60.00227 * 107.47853 * 25 9 7 27 27 H 0.96994 * 120.00229 * 4.99714 * 1 2 3 28 28 H 1.08996 * 109.47433 * 155.64746 * 10 9 7 29 29 H 1.09007 * 109.46471 * 35.65132 * 10 9 7 30 30 H 0.96997 * 119.99768 * 5.00059 * 11 10 9 31 31 H 1.09004 * 109.22957 * 252.62396 * 15 14 12 32 32 H 1.09001 * 109.23434 * 11.99881 * 15 14 12 33 33 H 1.09002 * 109.28553 * 291.70556 * 16 15 14 34 34 H 1.09003 * 109.96174 * 170.93540 * 16 15 14 35 35 H 1.08998 * 110.51747 * 262.02843 * 19 17 16 36 36 H 1.08995 * 110.52323 * 24.77248 * 19 17 16 37 37 H 1.08995 * 109.98043 * 238.39107 * 20 19 17 38 38 H 1.08997 * 109.98565 * 117.08881 * 20 19 17 39 39 H 1.00898 * 111.00200 * 93.82635 * 21 20 19 40 40 H 1.09008 * 110.07084 * 112.35966 * 24 14 12 41 41 H 1.09001 * 110.07240 * 350.77429 * 24 14 12 42 42 H 1.09002 * 117.50117 * 214.97262 * 25 9 7 43 43 H 1.09005 * 117.49825 * 359.97438 * 25 9 7 44 44 H 1.08998 * 117.50019 * 252.51289 * 26 25 9 45 45 H 1.09006 * 117.49550 * 107.49114 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0770 -1.1984 -0.1282 9 6 1.2617 -2.4931 0.1771 10 6 0.5877 -2.6873 1.5369 11 7 1.5626 -3.2159 2.4942 12 6 1.1685 -3.5621 3.7355 13 8 -0.0101 -3.5244 4.0319 14 7 2.0808 -3.9501 4.6486 15 6 3.4853 -4.0979 4.2551 16 6 4.4056 -3.4101 5.2634 17 6 4.0283 -3.9035 6.6487 18 1 4.0767 -4.9917 6.6889 19 6 4.8039 -3.2786 7.8102 20 6 3.7499 -3.1505 8.9390 21 7 2.4563 -3.6340 8.3789 22 6 2.5808 -3.4140 6.9332 23 1 2.4901 -2.3520 6.7052 24 6 1.6570 -4.2225 6.0378 25 6 0.5598 -3.0795 -1.0493 26 6 1.8338 -3.7340 -0.5113 27 1 -0.4850 0.8368 -0.0732 28 1 -0.2396 -3.3897 1.4354 29 1 0.2093 -1.7297 1.8948 30 1 2.4917 -3.3167 2.2344 31 1 3.7361 -5.1578 4.2109 32 1 3.6310 -3.6537 3.2705 33 1 4.2639 -2.3311 5.2025 34 1 5.4447 -3.6613 5.0504 35 1 5.6189 -3.9322 8.1209 36 1 5.1855 -2.2967 7.5305 37 1 3.6571 -2.1086 9.2453 38 1 4.0400 -3.7652 9.7910 39 1 2.3158 -4.6116 8.5851 40 1 1.7581 -5.2853 6.2582 41 1 0.6241 -3.9058 6.1827 42 1 -0.3822 -3.6036 -0.8876 43 1 0.6349 -2.5255 -1.9851 44 1 2.7473 -3.6106 -1.0930 45 1 1.7300 -4.6886 0.0045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591357582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:17 Heat of formation + Delta-G solvation = 7.158761 kcal Electronic energy + Delta-G solvation = -24478.979885 eV Core-core repulsion = 21111.115624 eV Total energy + Delta-G solvation = -3367.864261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61913 -38.93972 -36.80035 -35.53632 -33.33034 -32.39593 -32.04702 -30.10039 -28.79169 -26.34867 -25.27527 -23.92082 -22.88066 -21.41838 -21.20925 -20.58661 -19.38046 -19.19142 -17.76463 -16.47412 -16.05401 -15.59045 -15.14368 -14.97753 -14.81316 -14.62695 -14.31400 -13.96886 -13.69475 -13.42086 -13.18483 -13.00267 -12.62831 -12.41255 -12.28622 -11.71178 -11.52753 -11.38649 -11.34139 -11.04822 -10.96058 -10.91904 -10.84339 -10.54265 -10.47308 -10.29904 -9.70952 -9.44559 -9.04898 -8.81568 -8.59461 -8.58303 -8.22010 -7.96534 -6.07895 -4.14917 2.93123 3.26953 3.33696 3.34319 3.69896 3.92823 4.33110 4.36401 4.48259 4.48867 4.65099 4.85569 4.95765 5.07402 5.14181 5.19351 5.23359 5.33808 5.37448 5.42229 5.58973 5.63579 5.71273 5.80365 5.84162 5.90458 5.94225 6.01853 6.16528 6.31509 6.42608 6.47823 6.62068 6.68334 6.71219 6.88986 7.04657 7.13029 7.30972 7.33076 7.50703 7.53903 7.84131 8.34689 8.55703 8.84293 9.16172 9.49957 10.99841 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.004215 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.045652 B = 6642.119105 C = 7250.651903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.180 3.820 11 N -0.726 5.726 12 C 0.701 3.299 13 O -0.596 6.596 14 N -0.634 5.634 15 C 0.112 3.888 16 C -0.120 4.120 17 C -0.130 4.130 18 H 0.075 0.925 19 C -0.144 4.144 20 C 0.041 3.959 21 N -0.658 5.658 22 C 0.055 3.945 23 H 0.094 0.906 24 C 0.143 3.857 25 C -0.164 4.164 26 C -0.209 4.209 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.393 0.607 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.335 0.665 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -8.887 13.337 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.057 3.943 11 N -0.380 5.380 12 C 0.402 3.598 13 O -0.475 6.475 14 N -0.373 5.373 15 C -0.012 4.012 16 C -0.159 4.159 17 C -0.151 4.151 18 H 0.094 0.906 19 C -0.183 4.183 20 C -0.088 4.088 21 N -0.284 5.284 22 C -0.056 4.056 23 H 0.112 0.888 24 C 0.019 3.981 25 C -0.202 4.202 26 C -0.246 4.246 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.229 0.771 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.814 -8.092 13.760 18.235 hybrid contribution 1.686 0.179 -0.554 1.784 sum 10.501 -7.913 13.206 18.635 Atomic orbital electron populations 1.69950 1.05895 1.27155 1.47884 1.24976 0.94791 0.98942 0.94361 0.86688 0.79685 0.83210 0.78588 1.20280 1.21207 1.20205 1.20374 0.93116 0.88787 1.51610 0.92226 1.19070 0.97679 0.91358 0.88427 1.20906 0.88423 0.97676 0.87327 1.45522 1.13317 1.67844 1.11366 1.15983 0.84663 0.78079 0.81099 1.90872 1.15578 1.61425 1.79645 1.47302 1.07050 1.73568 1.09419 1.21399 0.81039 1.00196 0.98517 1.21573 0.99285 1.01371 0.93641 1.22534 0.97282 1.00311 0.94945 0.90648 1.22586 0.98443 1.01590 0.95663 1.23143 0.87311 1.01700 0.96692 1.62873 1.32517 1.24082 1.08974 1.22854 0.93741 1.01405 0.87641 0.88815 1.21145 1.00033 0.97802 0.79125 1.22706 0.93328 1.03586 1.00611 1.22879 0.97832 0.96970 1.06927 0.92667 0.94256 0.90459 0.77117 0.92152 0.89714 0.90855 0.90551 0.91397 0.90937 0.90406 0.91512 0.84977 0.92115 0.88096 0.91610 0.89981 0.90445 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 12.61 55.43 0.70 -23.70 16 2 C 0.07 1.96 5.22 -17.82 -0.09 1.87 16 3 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.98 8.82 -34.44 -0.30 -13.28 16 8 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 9 C 0.04 0.84 1.32 -155.66 -0.20 0.63 16 10 C 0.18 4.24 5.53 -4.04 -0.02 4.22 16 11 N -0.73 -14.45 5.36 -65.22 -0.35 -14.79 16 12 C 0.70 13.85 8.26 -86.92 -0.72 13.14 16 13 O -0.60 -14.12 15.71 5.29 0.08 -14.04 16 14 N -0.63 -9.48 3.01 -179.02 -0.54 -10.02 16 15 C 0.11 1.31 6.30 -4.06 -0.03 1.28 16 16 C -0.12 -1.18 5.64 -27.40 -0.15 -1.34 16 17 C -0.13 -1.20 2.55 -89.93 -0.23 -1.43 16 18 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 19 C -0.14 -1.15 6.61 -25.69 -0.17 -1.32 16 20 C 0.04 0.34 7.56 -1.60 -0.01 0.33 16 21 N -0.66 -6.59 7.46 -103.28 -0.77 -7.36 16 22 C 0.05 0.62 2.88 -67.03 -0.19 0.43 16 23 H 0.09 1.30 8.01 -51.93 -0.42 0.88 16 24 C 0.14 1.88 6.22 -3.88 -0.02 1.86 16 25 C -0.16 -3.71 9.88 -26.73 -0.26 -3.98 16 26 C -0.21 -4.26 9.78 -26.73 -0.26 -4.52 16 27 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 28 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 29 H 0.08 2.10 7.27 -51.92 -0.38 1.73 16 30 H 0.39 6.96 5.81 -40.82 -0.24 6.72 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.03 5.51 -51.93 -0.29 0.74 16 33 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.33 2.83 8.83 -39.29 -0.35 2.48 16 40 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 41 H 0.10 1.59 7.04 -51.93 -0.37 1.22 16 42 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 43 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -30.08 353.54 -10.71 -40.79 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.46 Total: 10.29 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.68 Total: -2.12 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.96 Total: -55.87 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.08 -10.71 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.947 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds