Wall clock time and date at job start Tue Mar 31 2020 07:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35123 * 125.55272 * 2 1 4 4 C 1.40981 * 108.24055 * 180.02562 * 3 2 1 5 5 N 1.33314 * 126.35504 * 180.02562 * 4 3 2 6 6 C 1.32901 * 120.00237 * 0.02562 * 5 4 3 7 7 O 1.21602 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00391 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47294 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47293 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46967 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99814 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99925 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47050 * 59.99917 * 16 14 12 18 18 H 1.48501 * 109.47053 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47149 * 300.00120 * 16 14 12 20 20 N 1.37280 * 107.28703 * 0.25657 * 4 3 2 21 21 H 0.97005 * 126.35084 * 179.73482 * 20 4 3 22 22 N 1.36336 * 125.55188 * 180.02562 * 2 1 3 23 23 C 1.46506 * 125.86282 * 359.97004 * 22 2 1 24 24 C 1.53002 * 109.47079 * 119.99601 * 23 22 2 25 25 C 1.52994 * 109.47012 * 239.99491 * 23 22 2 26 26 H 1.09000 * 109.47146 * 89.98041 * 1 2 3 27 27 H 1.09002 * 109.47550 * 209.97712 * 1 2 3 28 28 H 1.09001 * 109.47106 * 329.97711 * 1 2 3 29 29 H 1.07998 * 125.88154 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47240 * 299.99846 * 8 6 5 31 31 H 1.09004 * 109.46949 * 59.99383 * 8 6 5 32 32 H 1.09002 * 109.47106 * 300.00083 * 9 8 6 33 33 H 1.09004 * 109.47171 * 60.00043 * 9 8 6 34 34 H 1.09003 * 109.46614 * 300.00613 * 10 9 8 35 35 H 1.09004 * 109.46888 * 59.99978 * 10 9 8 36 36 H 1.09002 * 109.46782 * 299.99992 * 11 10 9 37 37 H 1.08991 * 109.47213 * 59.99827 * 11 10 9 38 38 H 0.96998 * 119.99885 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.47145 * 359.97438 * 23 22 2 40 40 H 1.09001 * 109.47080 * 60.00023 * 24 23 22 41 41 H 1.08999 * 109.46615 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.46908 * 299.99829 * 24 23 22 43 43 H 1.08992 * 109.47454 * 299.99798 * 25 23 22 44 44 H 1.09007 * 109.47020 * 60.00232 * 25 23 22 45 45 H 1.09004 * 109.47105 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2926 1.0993 0.0000 4 6 3.6385 0.6798 -0.0006 5 7 4.7125 1.4697 -0.0003 6 6 4.5660 2.7906 0.0012 7 8 3.4522 3.2787 0.0017 8 6 5.7799 3.6834 0.0009 9 6 5.3362 5.1476 0.0021 10 6 6.5688 6.0542 0.0025 11 6 6.1250 7.5184 0.0044 12 6 7.3390 8.4112 0.0042 13 1 8.3282 7.9777 0.0032 14 6 7.1869 9.7816 0.0051 15 7 5.9825 10.3095 0.0058 16 14 8.6918 10.8883 0.0041 17 1 9.5040 10.6183 -1.2094 18 1 8.2611 12.3095 0.0048 19 1 9.5067 10.6169 1.2155 20 7 3.6379 -0.6930 -0.0068 21 1 4.4190 -1.2683 -0.0123 22 7 2.2996 -1.1092 -0.0005 23 6 1.8327 -2.4979 -0.0005 24 6 2.3532 -3.2109 -1.2501 25 6 2.3544 -3.2113 1.2483 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.9487 2.1231 0.0004 30 1 6.3779 3.4839 0.8901 31 1 6.3763 3.4856 -0.8898 32 1 4.7384 5.3469 -0.8873 33 1 4.7396 5.3458 0.8927 34 1 7.1661 5.8547 0.8922 35 1 7.1657 5.8562 -0.8878 36 1 5.5274 7.7180 -0.8851 37 1 5.5283 7.7161 0.8948 38 1 5.8755 11.2736 0.0061 39 1 0.7428 -2.5147 0.0004 40 1 3.4431 -3.1941 -1.2507 41 1 2.0054 -4.2439 -1.2503 42 1 1.9815 -2.7026 -2.1398 43 1 3.4442 -3.1945 1.2478 44 1 1.9836 -2.7033 2.1386 45 1 2.0066 -4.2444 1.2486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591526604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:24 Heat of formation + Delta-G solvation = 41.697379 kcal Electronic energy + Delta-G solvation = -22577.820616 eV Core-core repulsion = 19211.454062 eV Total energy + Delta-G solvation = -3366.366554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85961 -38.97467 -36.34110 -34.65125 -33.92821 -32.66701 -32.37938 -29.89701 -28.92324 -28.36506 -28.11938 -25.56414 -23.31524 -22.06589 -21.48514 -20.48576 -19.72480 -19.23533 -17.49343 -16.45955 -16.08777 -16.06191 -15.70355 -15.07161 -15.04475 -14.50540 -14.23263 -14.00981 -13.76691 -13.71537 -13.62583 -13.29157 -13.05383 -12.99101 -12.52079 -12.37801 -12.24885 -11.96962 -11.78386 -11.43537 -11.31698 -10.81636 -10.54823 -10.40677 -10.20765 -10.16303 -9.64691 -9.64112 -9.36911 -9.07559 -8.84875 -8.65193 -8.16838 -7.63258 -5.82158 -3.83723 0.86256 0.98437 2.36166 3.16649 3.44901 3.48095 3.51403 3.82470 3.99122 4.03231 4.05259 4.15865 4.52921 4.59421 4.67814 4.69358 4.82732 4.87191 4.88559 4.95480 5.20264 5.29084 5.33070 5.37047 5.41585 5.52586 5.81937 5.88905 5.91111 6.11071 6.35112 6.50005 6.60032 6.66846 6.84701 6.90917 7.13989 7.25525 7.32178 7.44302 7.86949 7.90185 8.09309 8.21670 8.63874 9.04781 9.24133 9.78812 11.29254 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.002099 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.184807 B =13336.253397 C =13747.168079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.168 3.832 3 C -0.298 4.298 4 C 0.482 3.518 5 N -0.681 5.681 6 C 0.498 3.502 7 O -0.564 6.564 8 C -0.113 4.113 9 C -0.104 4.104 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.053 3.947 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 N -0.479 5.479 21 H 0.445 0.555 22 N -0.384 5.384 23 C 0.154 3.846 24 C -0.171 4.171 25 C -0.172 4.172 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.192 0.808 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -35.493 -0.050 38.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 C -0.329 4.329 4 C 0.228 3.772 5 N -0.440 5.440 6 C 0.286 3.714 7 O -0.444 6.444 8 C -0.153 4.153 9 C -0.142 4.142 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.147 4.147 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.205 5.205 21 H 0.292 0.708 22 N -0.177 5.177 23 C 0.054 3.946 24 C -0.229 4.229 25 C -0.230 4.230 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.209 0.791 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.793 -35.551 -0.049 38.133 hybrid contribution 0.782 0.532 -0.003 0.946 sum -13.011 -35.019 -0.052 37.358 Atomic orbital electron populations 1.20691 0.85950 1.04726 1.04294 1.21323 0.94174 0.85304 0.94188 1.22653 0.91385 1.00818 1.18033 1.19395 0.91928 0.82034 0.83847 1.69012 1.27884 1.06581 1.40508 1.21358 0.90446 0.85670 0.73961 1.90526 1.27832 1.79194 1.46801 1.21363 0.95623 0.94764 1.03516 1.21454 0.98875 0.91474 1.02392 1.21643 0.95648 0.97525 0.99966 1.19096 0.96369 0.89049 0.97203 1.21294 0.93095 0.91177 1.49972 0.92815 1.25049 0.95678 0.98312 0.95656 1.69972 1.21149 1.11284 1.51237 0.86674 0.83337 0.79543 0.78510 1.20337 1.21408 1.20332 1.44161 0.97348 1.05231 1.73789 0.70756 1.46689 0.94262 1.05443 1.71324 1.21561 1.00272 0.75922 0.96875 1.22273 1.02379 1.01287 0.96978 1.22277 1.02401 1.01278 0.97000 0.89090 0.90701 0.88205 0.79140 0.89704 0.89707 0.92234 0.92240 0.93604 0.93601 0.96652 0.96650 0.93125 0.86428 0.91844 0.89981 0.91230 0.91836 0.91233 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.37 9.92 36.00 0.36 -0.01 16 2 C 0.17 1.34 6.93 -81.70 -0.57 0.77 16 3 C -0.30 -3.82 9.41 -39.65 -0.37 -4.20 16 4 C 0.48 6.68 8.07 -155.18 -1.25 5.43 16 5 N -0.68 -11.61 10.51 -11.59 -0.12 -11.73 16 6 C 0.50 9.63 7.71 -11.82 -0.09 9.54 16 7 O -0.56 -11.93 12.89 5.28 0.07 -11.86 16 8 C -0.11 -2.10 5.78 -27.89 -0.16 -2.26 16 9 C -0.10 -2.22 4.50 -26.73 -0.12 -2.34 16 10 C -0.11 -2.59 5.15 -26.73 -0.14 -2.73 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.81 9.11 -34.44 -0.31 -16.12 16 13 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -28.71 13.29 55.43 0.74 -27.98 16 16 Si 0.89 22.90 29.54 -169.99 -5.02 17.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 N -0.48 -4.26 7.22 31.32 0.23 -4.04 16 21 H 0.44 2.96 8.96 -182.55 -1.64 1.32 16 22 N -0.38 -2.47 3.32 -50.41 -0.17 -2.64 16 23 C 0.15 0.39 3.64 -67.93 -0.25 0.14 16 24 C -0.17 -0.35 9.45 37.16 0.35 0.00 16 25 C -0.17 -0.35 9.45 37.15 0.35 0.00 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.10 7.05 -51.93 -0.37 -0.26 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.19 2.95 5.77 -52.49 -0.30 2.65 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.12 0.06 6.63 -51.93 -0.34 -0.29 16 40 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 42 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -39.18 372.27 -10.06 -49.24 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -8.95 Total: -4.68 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.44 Total: -9.81 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.67 Total: -46.38 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.18 -10.06 -49.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591526604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.934 kcal (2) G-P(sol) polarization free energy of solvation -39.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds