Wall clock time and date at job start Tue Mar 31 2020 07:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35123 * 125.55272 * 2 1 4 4 C 1.40981 * 108.24055 * 180.02562 * 3 2 1 5 5 N 1.33314 * 126.35504 * 180.02562 * 4 3 2 6 6 C 1.32901 * 120.00237 * 0.02562 * 5 4 3 7 7 O 1.21602 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00391 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47294 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47293 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46967 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99814 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99925 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47050 * 59.99917 * 16 14 12 18 18 H 1.48501 * 109.47053 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47149 * 300.00120 * 16 14 12 20 20 N 1.37280 * 107.28703 * 0.25657 * 4 3 2 21 21 H 0.97005 * 126.35084 * 179.73482 * 20 4 3 22 22 N 1.36336 * 125.55188 * 180.02562 * 2 1 3 23 23 C 1.46506 * 125.86282 * 359.97004 * 22 2 1 24 24 C 1.53002 * 109.47079 * 119.99601 * 23 22 2 25 25 C 1.52994 * 109.47012 * 239.99491 * 23 22 2 26 26 H 1.09000 * 109.47146 * 89.98041 * 1 2 3 27 27 H 1.09002 * 109.47550 * 209.97712 * 1 2 3 28 28 H 1.09001 * 109.47106 * 329.97711 * 1 2 3 29 29 H 1.07998 * 125.88154 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47240 * 299.99846 * 8 6 5 31 31 H 1.09004 * 109.46949 * 59.99383 * 8 6 5 32 32 H 1.09002 * 109.47106 * 300.00083 * 9 8 6 33 33 H 1.09004 * 109.47171 * 60.00043 * 9 8 6 34 34 H 1.09003 * 109.46614 * 300.00613 * 10 9 8 35 35 H 1.09004 * 109.46888 * 59.99978 * 10 9 8 36 36 H 1.09002 * 109.46782 * 299.99992 * 11 10 9 37 37 H 1.08991 * 109.47213 * 59.99827 * 11 10 9 38 38 H 0.96998 * 119.99885 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.47145 * 359.97438 * 23 22 2 40 40 H 1.09001 * 109.47080 * 60.00023 * 24 23 22 41 41 H 1.08999 * 109.46615 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.46908 * 299.99829 * 24 23 22 43 43 H 1.08992 * 109.47454 * 299.99798 * 25 23 22 44 44 H 1.09007 * 109.47020 * 60.00232 * 25 23 22 45 45 H 1.09004 * 109.47105 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2926 1.0993 0.0000 4 6 3.6385 0.6798 -0.0006 5 7 4.7125 1.4697 -0.0003 6 6 4.5660 2.7906 0.0012 7 8 3.4522 3.2787 0.0017 8 6 5.7799 3.6834 0.0009 9 6 5.3362 5.1476 0.0021 10 6 6.5688 6.0542 0.0025 11 6 6.1250 7.5184 0.0044 12 6 7.3390 8.4112 0.0042 13 1 8.3282 7.9777 0.0032 14 6 7.1869 9.7816 0.0051 15 7 5.9825 10.3095 0.0058 16 14 8.6918 10.8883 0.0041 17 1 9.5040 10.6183 -1.2094 18 1 8.2611 12.3095 0.0048 19 1 9.5067 10.6169 1.2155 20 7 3.6379 -0.6930 -0.0068 21 1 4.4190 -1.2683 -0.0123 22 7 2.2996 -1.1092 -0.0005 23 6 1.8327 -2.4979 -0.0005 24 6 2.3532 -3.2109 -1.2501 25 6 2.3544 -3.2113 1.2483 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.9487 2.1231 0.0004 30 1 6.3779 3.4839 0.8901 31 1 6.3763 3.4856 -0.8898 32 1 4.7384 5.3469 -0.8873 33 1 4.7396 5.3458 0.8927 34 1 7.1661 5.8547 0.8922 35 1 7.1657 5.8562 -0.8878 36 1 5.5274 7.7180 -0.8851 37 1 5.5283 7.7161 0.8948 38 1 5.8755 11.2736 0.0061 39 1 0.7428 -2.5147 0.0004 40 1 3.4431 -3.1941 -1.2507 41 1 2.0054 -4.2439 -1.2503 42 1 1.9815 -2.7026 -2.1398 43 1 3.4442 -3.1945 1.2478 44 1 1.9836 -2.7033 2.1386 45 1 2.0066 -4.2444 1.2486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591526604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:23 Heat of formation + Delta-G solvation = 14.652144 kcal Electronic energy + Delta-G solvation = -22578.993385 eV Core-core repulsion = 19211.454062 eV Total energy + Delta-G solvation = -3367.539323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.68643 -40.24796 -37.01059 -36.47205 -34.72836 -34.54382 -33.58521 -31.59537 -29.99868 -28.96244 -28.28338 -27.48229 -24.80392 -23.09164 -22.59569 -21.65548 -21.16637 -20.36395 -18.43649 -18.31642 -17.28733 -16.94650 -16.70391 -16.50698 -16.48115 -15.71615 -15.29969 -15.28955 -14.50419 -14.49187 -14.32258 -14.21729 -13.95429 -13.60282 -13.56636 -13.49285 -13.20017 -13.17257 -12.92233 -12.76826 -12.48618 -12.33595 -12.15634 -12.12554 -12.06602 -11.39352 -11.34021 -11.32277 -11.12416 -10.77198 -10.53266 -10.46865 -9.99700 -8.64211 -8.16872 -6.29419 -0.03724 0.29057 1.33335 1.40146 1.45614 1.53345 2.40811 2.43744 2.78384 3.14683 3.39624 3.49928 3.57359 3.81003 3.96197 4.07381 4.20389 4.20567 4.32274 4.52950 4.56142 4.63332 4.68877 4.74678 4.75701 4.76230 4.81466 4.88107 4.90899 5.01822 5.11142 5.15363 5.18202 5.22248 5.24475 5.34660 5.38897 5.57131 5.78675 5.78867 5.88189 6.00382 6.27246 6.38142 6.69640 6.87475 7.39293 7.78563 8.95428 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.002099 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.184807 B =13336.253397 C =13747.168079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.208 3.792 3 C -0.353 4.353 4 C 0.457 3.543 5 N -0.707 5.707 6 C 0.484 3.516 7 O -0.606 6.606 8 C -0.104 4.104 9 C -0.090 4.090 10 C -0.095 4.095 11 C 0.022 3.978 12 C -0.544 4.544 13 H 0.064 0.936 14 C -0.008 4.008 15 N -0.937 5.937 16 Si 0.974 3.026 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.265 1.265 20 N -0.462 5.462 21 H 0.456 0.544 22 N -0.357 5.357 23 C 0.144 3.856 24 C -0.170 4.170 25 C -0.171 4.171 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.057 0.943 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.264 0.736 39 H 0.154 0.846 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 -39.023 -0.068 41.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 C -0.384 4.384 4 C 0.206 3.794 5 N -0.470 5.470 6 C 0.272 3.728 7 O -0.490 6.490 8 C -0.143 4.143 9 C -0.128 4.128 10 C -0.133 4.133 11 C -0.016 4.016 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.205 4.205 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.189 1.189 20 N -0.186 5.186 21 H 0.306 0.694 22 N -0.147 5.147 23 C 0.046 3.954 24 C -0.228 4.228 25 C -0.229 4.229 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.175 0.825 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.038 -39.241 -0.068 41.676 hybrid contribution 0.600 1.295 0.001 1.427 sum -13.438 -37.946 -0.066 40.255 Atomic orbital electron populations 1.20968 0.82138 1.06570 1.06103 1.21870 0.96023 0.84106 0.89565 1.22266 0.92048 1.01075 1.23017 1.19476 0.91977 0.83465 0.84434 1.68853 1.29108 1.05570 1.43437 1.21430 0.89927 0.86915 0.74545 1.90519 1.28757 1.79821 1.49866 1.21214 0.95975 0.92439 1.04690 1.21229 0.97447 0.93503 1.00670 1.21457 0.96506 0.94384 1.00958 1.19030 0.95547 0.92610 0.94367 1.21709 0.93780 0.92137 1.50582 0.91768 1.26138 0.99524 1.00178 0.94678 1.70133 1.23952 1.11946 1.51686 0.85376 0.78640 0.76932 0.79312 1.18954 1.20708 1.18939 1.44186 0.99187 1.03943 1.71313 0.69360 1.47491 0.92882 1.07012 1.67359 1.22204 1.02263 0.73177 0.97718 1.22290 1.01901 1.02636 0.95987 1.22297 1.01917 1.02637 0.96012 0.86980 0.86827 0.88428 0.82506 0.88449 0.88449 0.93999 0.94009 0.92459 0.92453 0.99594 0.99588 0.92775 0.82837 0.92692 0.87307 0.91961 0.92703 0.91965 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 9.92 71.23 0.71 0.30 16 2 C 0.21 2.96 6.93 41.14 0.28 3.25 16 3 C -0.35 -9.56 9.41 22.22 0.21 -9.35 16 4 C 0.46 13.23 8.07 133.82 1.08 14.31 16 5 N -0.71 -25.53 10.51 -309.88 -3.26 -28.79 16 6 C 0.48 20.15 7.71 87.95 0.68 20.82 16 7 O -0.61 -28.19 12.89 -4.04 -0.05 -28.25 16 8 C -0.10 -4.04 5.78 29.85 0.17 -3.86 16 9 C -0.09 -4.12 4.50 30.60 0.14 -3.98 16 10 C -0.10 -4.64 5.15 30.60 0.16 -4.49 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -33.95 9.11 25.60 0.23 -33.71 16 13 H 0.06 3.78 7.74 -2.91 -0.02 3.76 16 14 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 15 N -0.94 -61.60 13.29 21.45 0.28 -61.32 16 16 Si 0.97 47.23 29.54 68.60 2.03 49.26 16 17 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 20 N -0.46 -7.82 7.22 -54.81 -0.40 -8.21 16 21 H 0.46 5.55 8.96 -213.28 -1.91 3.64 16 22 N -0.36 -3.67 3.32 -313.41 -1.04 -4.71 16 23 C 0.14 0.09 3.64 44.99 0.16 0.26 16 24 C -0.17 -0.02 9.45 71.98 0.68 0.66 16 25 C -0.17 -0.02 9.45 71.98 0.68 0.66 16 26 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.11 -0.35 7.05 -2.39 -0.02 -0.36 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.16 5.45 5.77 -2.91 -0.02 5.44 16 30 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 33 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 34 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 39 H 0.15 -0.83 6.63 -2.39 -0.02 -0.84 16 40 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 43 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 45 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 Total: -1.00 -92.29 372.27 2.42 -89.88 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -0.94 Total: 5.88 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.79 Total: -13.74 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.41 Total: -103.03 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -92.29 2.42 -89.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591526604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.527 kcal (2) G-P(sol) polarization free energy of solvation -92.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds