Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00028 * 2 1 4 4 C 1.53001 * 109.47026 * 184.86309 * 3 2 1 5 5 N 1.46893 * 109.47256 * 67.76218 * 4 3 2 6 6 C 1.46903 * 111.00136 * 286.76562 * 5 4 3 7 7 C 1.50694 * 109.47323 * 172.00197 * 6 5 4 8 8 H 1.08008 * 119.99846 * 4.59859 * 7 6 5 9 9 C 1.37871 * 120.00312 * 184.60719 * 7 6 5 10 10 N 1.31517 * 119.99701 * 5.07648 * 9 7 6 11 11 Si 1.86795 * 120.00517 * 185.07365 * 9 7 6 12 12 H 1.48501 * 109.46942 * 64.99816 * 11 9 7 13 13 H 1.48499 * 109.47648 * 184.99912 * 11 9 7 14 14 H 1.48507 * 109.47159 * 305.00318 * 11 9 7 15 15 C 1.46907 * 110.99742 * 162.81959 * 5 4 3 16 16 C 1.53006 * 109.46860 * 284.24332 * 15 5 4 17 17 H 1.09000 * 109.47009 * 307.17696 * 16 15 5 18 18 O 1.42905 * 109.46955 * 67.17681 * 16 15 5 19 19 C 1.52996 * 109.47053 * 187.17896 * 16 15 5 20 20 C 1.50703 * 109.46957 * 175.00173 * 19 16 15 21 21 C 1.38239 * 120.00093 * 90.00191 * 20 19 16 22 22 C 1.38226 * 119.99952 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00121 * 359.97438 * 22 21 20 24 24 C 1.38232 * 119.99981 * 0.27684 * 23 22 21 25 25 C 1.38229 * 120.00097 * 269.97205 * 20 19 16 26 26 H 1.08996 * 109.47232 * 304.95834 * 1 2 3 27 27 H 1.08998 * 109.47014 * 64.96089 * 1 2 3 28 28 H 1.08995 * 109.47071 * 184.95589 * 1 2 3 29 29 H 1.08996 * 109.47397 * 64.85605 * 3 2 1 30 30 H 1.09000 * 109.46976 * 304.85852 * 3 2 1 31 31 H 1.09000 * 109.46646 * 307.75803 * 4 3 2 32 32 H 1.09001 * 109.46747 * 187.76537 * 4 3 2 33 33 H 1.08999 * 109.47395 * 292.00529 * 6 5 4 34 34 H 1.09007 * 109.46624 * 52.00120 * 6 5 4 35 35 H 0.96999 * 119.99932 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.46751 * 164.24905 * 15 5 4 37 37 H 1.08997 * 109.47571 * 44.24476 * 15 5 4 38 38 H 0.96702 * 113.99500 * 59.99968 * 18 16 15 39 39 H 1.08999 * 109.47489 * 55.00167 * 19 16 15 40 40 H 1.09003 * 109.47186 * 295.00131 * 19 16 15 41 41 H 1.08008 * 119.99892 * 359.97332 * 21 20 19 42 42 H 1.08008 * 119.99819 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.99896 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00231 * 179.72770 * 24 23 22 45 45 H 1.08003 * 120.00057 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1223 5 7 3.8761 0.6707 -1.4535 6 6 3.5570 -0.7591 -1.5631 7 6 3.7383 -1.2063 -2.9906 8 1 4.1294 -0.5190 -3.7263 9 6 3.4048 -2.4928 -3.3577 10 7 2.8360 -3.2983 -2.4875 11 14 3.7607 -3.0916 -5.0909 12 1 5.2289 -3.1254 -5.3111 13 1 3.2021 -4.4561 -5.2677 14 1 3.1342 -2.1693 -6.0717 15 6 5.2903 0.9196 -1.7640 16 6 5.4818 2.3948 -2.1221 17 1 4.7782 2.6724 -2.9069 18 8 5.2470 3.2002 -0.9652 19 6 6.9121 2.6178 -2.6172 20 6 7.0653 4.0422 -3.0852 21 6 7.4664 5.0223 -2.1967 22 6 7.6074 6.3286 -2.6261 23 6 7.3478 6.6548 -3.9440 24 6 6.9416 5.6757 -4.8313 25 6 6.8052 4.3685 -4.4030 26 1 -0.3633 0.5888 0.8422 27 1 -0.3633 0.4349 -0.9311 28 1 -0.3633 -1.0238 0.0888 29 1 1.7592 1.8150 0.9302 30 1 1.6214 1.8763 -0.8433 31 1 3.9043 0.5035 0.6405 32 1 3.9840 2.1683 0.0158 33 1 4.2224 -1.3305 -0.9160 34 1 2.5234 -0.9249 -1.2588 35 1 2.6011 -4.2033 -2.7458 36 1 5.5917 0.2988 -2.6077 37 1 5.9016 0.6742 -0.8956 38 1 5.8386 3.0070 -0.2250 39 1 7.1203 1.9393 -3.4444 40 1 7.6122 2.4252 -1.8043 41 1 7.6697 4.7673 -1.1670 42 1 7.9205 7.0944 -1.9318 43 1 7.4584 7.6754 -4.2796 44 1 6.7345 5.9313 -5.8600 45 1 6.4919 3.6027 -5.0972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591845188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = -67.048345 kcal Electronic energy + Delta-G solvation = -23928.970735 eV Core-core repulsion = 20525.595862 eV Total energy + Delta-G solvation = -3403.374874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45943 -38.15472 -37.07879 -35.13265 -32.82967 -32.41101 -30.86020 -30.04119 -28.68380 -26.76658 -25.67612 -24.58468 -22.54667 -22.15099 -21.74682 -20.86248 -19.87836 -16.90154 -16.47542 -16.10716 -15.77109 -15.56414 -15.34585 -14.99960 -14.86857 -14.60414 -14.30209 -14.15561 -13.53129 -13.37408 -13.15154 -12.73865 -12.58376 -12.33032 -11.87583 -11.74051 -11.53451 -11.35031 -11.11675 -11.04408 -10.92372 -10.78455 -10.71268 -10.64968 -10.45091 -10.31315 -9.92992 -9.35015 -9.07145 -8.88701 -8.79079 -8.54403 -8.20221 -7.10390 -5.90747 -3.90358 1.39239 1.43422 3.36421 3.41254 3.43364 3.80589 4.47283 4.48882 4.59064 4.79502 4.90358 4.94552 5.02411 5.13857 5.33422 5.43337 5.46702 5.53170 5.60408 5.65139 5.71470 5.81052 5.86488 5.92791 5.94720 5.97352 6.06680 6.11225 6.16493 6.20528 6.41197 6.48452 6.51656 6.53991 6.58730 6.59177 6.72983 7.03845 7.51492 7.66396 7.84989 7.88715 7.90569 8.34297 8.47029 8.71384 9.18115 9.70920 11.19694 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004378 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.080639 B = 6394.118431 C = 7970.839665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.039 3.961 5 N -0.526 5.526 6 C 0.179 3.821 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.030 3.970 16 C 0.118 3.882 17 H 0.105 0.895 18 O -0.553 6.553 19 C -0.117 4.117 20 C -0.065 4.065 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.118 4.118 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.102 0.898 33 H -0.024 1.024 34 H 0.078 0.922 35 H 0.259 0.741 36 H 0.094 0.906 37 H 0.020 0.980 38 H 0.363 0.637 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 16.123 2.295 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C -0.006 4.006 4 C -0.089 4.089 5 N -0.251 5.251 6 C 0.054 3.946 7 C -0.546 4.546 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.718 3.282 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.099 4.099 16 C 0.059 3.941 17 H 0.123 0.877 18 O -0.358 6.358 19 C -0.155 4.155 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.120 0.880 33 H -0.006 1.006 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.209 0.791 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.918 16.248 1.585 17.365 hybrid contribution 0.849 -0.959 -0.082 1.284 sum 6.767 15.288 1.502 16.787 Atomic orbital electron populations 1.22617 0.82756 1.02027 0.98851 1.88156 1.18361 1.27359 1.94802 1.22503 0.94599 0.85014 0.98493 1.22522 0.93776 1.01121 0.91462 1.62114 1.16490 1.21579 1.24877 1.20171 0.98935 0.79612 0.95874 1.21179 1.42201 0.96321 0.94939 0.92421 1.24941 0.95419 0.97039 0.97008 1.69985 1.41535 1.07168 1.34581 0.86697 0.78424 0.77819 0.85238 1.20547 1.21437 1.20250 1.22700 0.91013 0.95213 1.01011 1.22102 0.93723 0.90418 0.87823 0.87671 1.86592 1.61042 1.63483 1.24666 1.21394 0.98816 0.93015 1.02235 1.19810 0.97645 0.95594 0.93475 1.20977 0.99671 0.92749 0.99090 1.21093 1.00646 0.96401 0.95915 1.21077 1.00863 0.99087 0.93929 1.21107 0.99972 0.93227 0.99552 1.21118 1.00191 0.96630 0.95694 0.95402 0.94489 0.90188 0.94630 0.93028 0.95872 0.88046 1.00609 0.90461 0.93135 0.88782 0.96180 0.79086 0.89695 0.90918 0.86399 0.86494 0.86583 0.86365 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.37 -7.74 7.69 -35.23 -0.27 -8.01 16 3 C 0.07 1.29 6.22 37.16 0.23 1.52 16 4 C 0.04 0.74 5.33 -3.83 -0.02 0.72 16 5 N -0.53 -11.35 4.39 -236.07 -1.04 -12.39 16 6 C 0.18 4.76 4.48 -4.98 -0.02 4.74 16 7 C -0.51 -14.36 8.32 -34.45 -0.29 -14.65 16 8 H 0.06 1.59 7.00 -52.48 -0.37 1.22 16 9 C 0.06 1.64 5.45 -17.82 -0.10 1.54 16 10 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.03 0.54 4.61 -3.82 -0.02 0.52 16 16 C 0.12 1.76 3.16 -26.73 -0.08 1.67 16 17 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 18 O -0.55 -7.58 10.00 -35.23 -0.35 -7.94 16 19 C -0.12 -1.44 5.03 -27.88 -0.14 -1.58 16 20 C -0.07 -0.81 4.97 -104.62 -0.52 -1.33 16 21 C -0.11 -1.22 9.40 -39.59 -0.37 -1.59 16 22 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 23 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 16 24 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 25 C -0.12 -1.45 9.70 -39.59 -0.38 -1.84 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 32 H 0.10 1.63 4.80 -51.93 -0.25 1.38 16 33 H -0.02 -0.69 8.14 -51.93 -0.42 -1.12 16 34 H 0.08 2.24 5.02 -51.92 -0.26 1.98 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.91 6.32 -51.93 -0.33 1.58 16 37 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 38 H 0.36 3.76 8.89 45.56 0.41 4.17 16 39 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -32.63 363.86 -8.94 -41.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.68 Total: 4.62 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.79 Total: -13.80 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.30 Total: -38.69 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.62 Total: -15.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.63 -8.94 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591845188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.486 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds