Wall clock time and date at job start Tue Mar 31 2020 06:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00028 * 2 1 4 4 C 1.53001 * 109.47026 * 184.86309 * 3 2 1 5 5 N 1.46893 * 109.47256 * 67.76218 * 4 3 2 6 6 C 1.46903 * 111.00136 * 286.76562 * 5 4 3 7 7 C 1.50694 * 109.47323 * 172.00197 * 6 5 4 8 8 H 1.08008 * 119.99846 * 4.59859 * 7 6 5 9 9 C 1.37871 * 120.00312 * 184.60719 * 7 6 5 10 10 N 1.31517 * 119.99701 * 5.07648 * 9 7 6 11 11 Si 1.86795 * 120.00517 * 185.07365 * 9 7 6 12 12 H 1.48501 * 109.46942 * 64.99816 * 11 9 7 13 13 H 1.48499 * 109.47648 * 184.99912 * 11 9 7 14 14 H 1.48507 * 109.47159 * 305.00318 * 11 9 7 15 15 C 1.46907 * 110.99742 * 162.81959 * 5 4 3 16 16 C 1.53006 * 109.46860 * 284.24332 * 15 5 4 17 17 H 1.09000 * 109.47009 * 307.17696 * 16 15 5 18 18 O 1.42905 * 109.46955 * 67.17681 * 16 15 5 19 19 C 1.52996 * 109.47053 * 187.17896 * 16 15 5 20 20 C 1.50703 * 109.46957 * 175.00173 * 19 16 15 21 21 C 1.38239 * 120.00093 * 90.00191 * 20 19 16 22 22 C 1.38226 * 119.99952 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00121 * 359.97438 * 22 21 20 24 24 C 1.38232 * 119.99981 * 0.27684 * 23 22 21 25 25 C 1.38229 * 120.00097 * 269.97205 * 20 19 16 26 26 H 1.08996 * 109.47232 * 304.95834 * 1 2 3 27 27 H 1.08998 * 109.47014 * 64.96089 * 1 2 3 28 28 H 1.08995 * 109.47071 * 184.95589 * 1 2 3 29 29 H 1.08996 * 109.47397 * 64.85605 * 3 2 1 30 30 H 1.09000 * 109.46976 * 304.85852 * 3 2 1 31 31 H 1.09000 * 109.46646 * 307.75803 * 4 3 2 32 32 H 1.09001 * 109.46747 * 187.76537 * 4 3 2 33 33 H 1.08999 * 109.47395 * 292.00529 * 6 5 4 34 34 H 1.09007 * 109.46624 * 52.00120 * 6 5 4 35 35 H 0.96999 * 119.99932 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.46751 * 164.24905 * 15 5 4 37 37 H 1.08997 * 109.47571 * 44.24476 * 15 5 4 38 38 H 0.96702 * 113.99500 * 59.99968 * 18 16 15 39 39 H 1.08999 * 109.47489 * 55.00167 * 19 16 15 40 40 H 1.09003 * 109.47186 * 295.00131 * 19 16 15 41 41 H 1.08008 * 119.99892 * 359.97332 * 21 20 19 42 42 H 1.08008 * 119.99819 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.99896 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00231 * 179.72770 * 24 23 22 45 45 H 1.08003 * 120.00057 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1223 5 7 3.8761 0.6707 -1.4535 6 6 3.5570 -0.7591 -1.5631 7 6 3.7383 -1.2063 -2.9906 8 1 4.1294 -0.5190 -3.7263 9 6 3.4048 -2.4928 -3.3577 10 7 2.8360 -3.2983 -2.4875 11 14 3.7607 -3.0916 -5.0909 12 1 5.2289 -3.1254 -5.3111 13 1 3.2021 -4.4561 -5.2677 14 1 3.1342 -2.1693 -6.0717 15 6 5.2903 0.9196 -1.7640 16 6 5.4818 2.3948 -2.1221 17 1 4.7782 2.6724 -2.9069 18 8 5.2470 3.2002 -0.9652 19 6 6.9121 2.6178 -2.6172 20 6 7.0653 4.0422 -3.0852 21 6 7.4664 5.0223 -2.1967 22 6 7.6074 6.3286 -2.6261 23 6 7.3478 6.6548 -3.9440 24 6 6.9416 5.6757 -4.8313 25 6 6.8052 4.3685 -4.4030 26 1 -0.3633 0.5888 0.8422 27 1 -0.3633 0.4349 -0.9311 28 1 -0.3633 -1.0238 0.0888 29 1 1.7592 1.8150 0.9302 30 1 1.6214 1.8763 -0.8433 31 1 3.9043 0.5035 0.6405 32 1 3.9840 2.1683 0.0158 33 1 4.2224 -1.3305 -0.9160 34 1 2.5234 -0.9249 -1.2588 35 1 2.6011 -4.2033 -2.7458 36 1 5.5917 0.2988 -2.6077 37 1 5.9016 0.6742 -0.8956 38 1 5.8386 3.0070 -0.2250 39 1 7.1203 1.9393 -3.4444 40 1 7.6122 2.4252 -1.8043 41 1 7.6697 4.7673 -1.1670 42 1 7.9205 7.0944 -1.9318 43 1 7.4584 7.6754 -4.2796 44 1 6.7345 5.9313 -5.8600 45 1 6.4919 3.6027 -5.0972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591845188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:36 Heat of formation + Delta-G solvation = -89.271960 kcal Electronic energy + Delta-G solvation = -23929.934424 eV Core-core repulsion = 20525.595862 eV Total energy + Delta-G solvation = -3404.338562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43780 -39.50998 -38.41626 -36.70368 -34.54240 -33.79868 -31.68222 -31.38416 -30.24752 -28.41939 -27.01343 -26.17564 -23.92780 -23.37993 -22.99545 -21.88071 -21.50921 -18.56141 -17.75642 -17.36570 -17.22292 -16.99434 -16.64579 -16.57274 -15.98439 -15.85333 -15.69444 -15.54117 -14.89206 -14.64693 -14.31787 -14.17653 -13.78338 -13.57554 -13.44271 -13.08565 -12.99313 -12.78756 -12.63425 -12.57751 -12.49802 -12.21511 -12.05723 -11.95373 -11.87228 -11.74850 -11.65346 -11.12983 -10.61941 -10.56546 -10.18382 -9.72511 -9.46215 -8.87005 -8.11665 -6.19496 0.53790 0.59807 1.40416 1.43343 1.51091 2.43375 2.93236 3.07360 3.21221 3.33374 3.56812 3.87980 4.03658 4.20228 4.25272 4.27068 4.31194 4.36430 4.43612 4.49870 4.50414 4.56218 4.59057 4.69192 4.73101 4.83008 4.86700 4.93014 4.95168 5.04548 5.07449 5.19601 5.25706 5.28513 5.39742 5.65837 5.68260 5.70082 5.78192 5.83032 6.20572 6.22073 6.42196 6.57690 6.79912 6.91263 6.99120 7.47342 8.99126 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004378 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.080639 B = 6394.118431 C = 7970.839665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.409 6.409 3 C 0.069 3.931 4 C 0.040 3.960 5 N -0.534 5.534 6 C 0.194 3.806 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.030 3.970 16 C 0.141 3.859 17 H 0.082 0.918 18 O -0.556 6.556 19 C -0.106 4.106 20 C -0.081 4.081 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.131 4.131 25 C -0.139 4.139 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.011 0.989 32 H 0.132 0.868 33 H -0.062 1.062 34 H 0.054 0.946 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.381 0.619 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 18.293 2.125 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.329 6.329 3 C -0.008 4.008 4 C -0.087 4.087 5 N -0.258 5.258 6 C 0.069 3.931 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.098 4.098 16 C 0.081 3.919 17 H 0.100 0.900 18 O -0.363 6.363 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.150 0.850 33 H -0.045 1.045 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.230 0.770 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.830 18.447 1.426 19.722 hybrid contribution 0.566 -1.548 0.043 1.649 sum 7.395 16.898 1.469 18.504 Atomic orbital electron populations 1.22747 0.80937 1.02576 1.00242 1.88089 1.20594 1.29132 1.95090 1.22633 0.93929 0.84236 0.99979 1.22689 0.94703 1.01951 0.89397 1.62059 1.18724 1.18118 1.26935 1.19795 0.96685 0.82307 0.94359 1.21507 1.41971 0.96764 0.95749 0.92264 1.25844 0.95020 0.97167 1.01489 1.70133 1.42596 1.07521 1.36906 0.85571 0.78780 0.77235 0.79826 1.19302 1.21039 1.19420 1.22746 0.89251 0.97455 1.00366 1.21653 0.94887 0.87674 0.87683 0.90038 1.86537 1.61940 1.62809 1.25013 1.21252 0.97175 0.93410 1.02609 1.19841 0.98848 0.95561 0.93858 1.21227 0.99392 0.92955 0.99714 1.21446 0.99996 0.96696 0.96489 1.21435 0.99882 1.00105 0.93902 1.21377 0.99848 0.92949 1.00680 1.21289 1.01019 0.97386 0.96006 0.91998 0.94602 0.90550 0.91106 0.93639 0.97120 0.85035 1.04460 0.92838 0.93061 0.91293 0.95171 0.76992 0.90250 0.89075 0.84860 0.84169 0.84246 0.84812 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.41 -17.48 7.69 -148.98 -1.15 -18.62 16 3 C 0.07 2.46 6.22 71.98 0.45 2.90 16 4 C 0.04 1.49 5.33 86.30 0.46 1.95 16 5 N -0.53 -23.51 4.39 -900.78 -3.95 -27.46 16 6 C 0.19 10.82 4.48 85.55 0.38 11.20 16 7 C -0.52 -30.36 8.32 25.60 0.21 -30.14 16 8 H 0.06 3.34 7.00 -2.91 -0.02 3.32 16 9 C 0.00 0.15 5.45 84.65 0.46 0.61 16 10 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 11 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 15 C 0.03 1.12 4.61 86.30 0.40 1.52 16 16 C 0.14 4.07 3.16 30.59 0.10 4.16 16 17 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 18 O -0.56 -14.04 10.00 -148.98 -1.49 -15.53 16 19 C -0.11 -2.51 5.03 29.85 0.15 -2.36 16 20 C -0.08 -1.90 4.97 -19.87 -0.10 -2.00 16 21 C -0.11 -2.36 9.40 22.27 0.21 -2.15 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 23 C -0.14 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 25 C -0.14 -3.32 9.70 22.27 0.22 -3.10 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 32 H 0.13 3.99 4.80 -2.39 -0.01 3.98 16 33 H -0.06 -3.83 8.14 -2.39 -0.02 -3.85 16 34 H 0.05 3.26 5.02 -2.38 -0.01 3.25 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.07 2.88 6.32 -2.39 -0.02 2.87 16 37 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 38 H 0.38 6.75 8.89 -74.06 -0.66 6.09 16 39 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 40 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 41 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -72.45 363.86 0.88 -71.57 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.30 Total: 22.49 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.86 Total: -22.05 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.67 Total: -85.12 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.63 Total: -34.15 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.45 0.88 -71.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591845188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.703 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds