Wall clock time and date at job start Tue Mar 31 2020 07:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47269 * 90.92291 * 3 2 1 5 5 C 1.53004 * 109.47383 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47383 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46938 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99675 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00071 * 4.97931 * 8 7 6 10 10 N 1.34774 * 119.99915 * 184.98301 * 8 7 6 11 11 C 1.46926 * 120.63121 * 174.77166 * 10 8 7 12 12 C 1.53195 * 108.89465 * 126.33965 * 11 10 8 13 13 C 1.53354 * 109.14570 * 54.57617 * 12 11 10 14 14 C 1.53002 * 109.41659 * 178.67459 * 13 12 11 15 15 C 1.50705 * 109.47219 * 295.13248 * 14 13 12 16 16 H 1.08004 * 119.99805 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00149 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47058 * 89.99862 * 19 17 15 21 21 H 1.48501 * 109.47118 * 209.99865 * 19 17 15 22 22 H 1.48503 * 109.47450 * 329.99994 * 19 17 15 23 23 C 1.53040 * 109.60905 * 298.70899 * 13 12 11 24 24 C 1.46926 * 120.63157 * 354.78914 * 10 8 7 25 25 H 1.08999 * 109.47076 * 330.92083 * 3 2 1 26 26 H 1.09004 * 109.46818 * 210.92309 * 3 2 1 27 27 H 1.09007 * 109.46974 * 59.99949 * 4 3 2 28 28 H 1.08998 * 109.47220 * 300.00218 * 4 3 2 29 29 H 1.08999 * 109.46688 * 59.99960 * 5 4 3 30 30 H 1.09004 * 109.47092 * 300.00256 * 5 4 3 31 31 H 1.09007 * 109.46974 * 60.00355 * 6 5 4 32 32 H 1.08998 * 109.47220 * 300.00624 * 6 5 4 33 33 H 0.96993 * 120.00686 * 359.97438 * 7 6 5 34 34 H 1.08999 * 109.58363 * 246.19988 * 11 10 8 35 35 H 1.09002 * 109.58625 * 6.48116 * 11 10 8 36 36 H 1.08997 * 109.49623 * 174.65400 * 12 11 10 37 37 H 1.09002 * 109.49577 * 294.75334 * 12 11 10 38 38 H 1.08994 * 109.42367 * 58.75582 * 13 12 11 39 39 H 1.09008 * 109.47043 * 55.12644 * 14 13 12 40 40 H 1.08992 * 109.47289 * 175.12966 * 14 13 12 41 41 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.50186 * 301.42491 * 23 13 12 43 43 H 1.09004 * 109.52060 * 181.34332 * 23 13 12 44 44 H 1.09010 * 109.58451 * 353.37613 * 24 10 8 45 45 H 1.08999 * 109.58904 * 113.65827 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0241 -1.4423 5 6 4.6480 0.0254 -1.4423 6 6 5.1581 0.0483 -2.8846 7 7 6.6230 0.0489 -2.8845 8 6 7.2970 0.0680 -4.0516 9 8 6.6924 0.1761 -5.1009 10 7 8.6409 -0.0327 -4.0554 11 6 9.3809 -0.1284 -5.3211 12 6 10.4570 0.9615 -5.3503 13 6 11.3316 0.8384 -4.0966 14 6 12.4293 1.9035 -4.1356 15 6 13.3509 1.6329 -5.2969 16 1 13.1718 0.7856 -5.9423 17 6 14.4226 2.4668 -5.5354 18 7 14.6403 3.4988 -4.7497 19 14 15.5653 2.1309 -6.9744 20 1 15.0644 2.8389 -8.1799 21 1 16.9299 2.6162 -6.6466 22 1 15.6098 0.6706 -7.2408 23 6 10.4702 1.0396 -2.8477 24 6 9.3940 -0.0493 -2.7939 25 1 2.9717 -0.8973 0.4995 26 1 2.9709 0.8825 0.5281 27 1 2.7542 0.9222 -1.9417 28 1 2.7551 -0.8576 -1.9704 29 1 5.0121 -0.8723 -0.9427 30 1 5.0106 0.9074 -0.9143 31 1 4.7940 0.9459 -3.3845 32 1 4.7954 -0.8339 -3.4122 33 1 7.1081 0.0364 -2.0446 34 1 9.8514 -1.1087 -5.3960 35 1 8.6953 0.0126 -6.1567 36 1 11.0733 0.8405 -6.2411 37 1 9.9814 1.9421 -5.3667 38 1 11.7870 -0.1514 -4.0681 39 1 11.9763 2.8880 -4.2531 40 1 12.9977 1.8737 -3.2061 41 1 15.3945 4.0853 -4.9174 42 1 9.9947 2.0195 -2.8876 43 1 11.0974 0.9755 -1.9585 44 1 8.7174 0.1464 -1.9619 45 1 9.8636 -1.0240 -2.6614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591928910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:40 Heat of formation + Delta-G solvation = -30.919067 kcal Electronic energy + Delta-G solvation = -22742.739871 eV Core-core repulsion = 19373.224431 eV Total energy + Delta-G solvation = -3369.515439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27485 -37.86454 -37.38963 -36.05308 -34.20326 -33.78165 -32.08670 -30.82840 -29.72747 -27.89819 -25.03943 -24.27183 -22.70744 -21.90275 -21.86281 -20.03936 -19.18151 -18.14794 -17.63421 -16.55895 -16.37549 -16.16817 -15.52279 -14.87894 -14.56923 -14.51514 -14.16238 -14.03516 -13.71645 -13.45297 -13.35196 -13.17285 -12.87835 -12.72420 -12.46836 -12.17960 -12.04375 -11.88269 -11.80478 -11.58647 -11.21042 -11.17916 -11.02288 -10.76933 -10.67980 -10.42051 -10.20550 -9.94763 -9.63370 -9.28019 -9.16023 -8.97771 -8.35977 -8.24522 -6.00657 -4.02331 2.29270 2.35318 2.72696 3.29987 3.31441 3.38151 3.40686 3.48708 3.92000 4.26713 4.35374 4.45209 4.67065 4.80310 4.89463 4.96995 5.03471 5.22567 5.30896 5.31532 5.34797 5.36731 5.51998 5.59176 5.65517 5.72702 5.77159 5.81867 5.97755 6.09429 6.31664 6.38237 6.42421 6.49195 6.63818 6.96152 7.01298 7.08112 7.12277 7.13287 7.65213 7.79856 7.98927 8.00817 8.41763 8.67927 9.04072 9.61644 11.10601 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041555 B = 0.002194 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.648889 B =12758.082799 C =13110.893881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.205 3.795 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.137 3.863 7 N -0.752 5.752 8 C 0.706 3.294 9 O -0.596 6.596 10 N -0.622 5.622 11 C 0.126 3.874 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.130 4.130 24 C 0.114 3.886 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.449 -8.539 10.720 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.113 4.113 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.169 4.169 6 C 0.012 3.988 7 N -0.411 5.411 8 C 0.408 3.592 9 O -0.475 6.475 10 N -0.359 5.359 11 C 0.003 3.997 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.009 4.009 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.487 -8.336 9.969 23.422 hybrid contribution 1.487 -0.008 -0.263 1.510 sum -18.000 -8.344 9.706 22.087 Atomic orbital electron populations 1.81268 1.13229 1.08860 1.08307 1.29277 0.95408 0.93217 0.93369 1.19334 0.81435 1.05996 0.99831 1.21444 0.95224 1.04157 0.94494 1.21782 0.94878 1.03503 0.96746 1.21128 0.78921 1.02493 0.96218 1.45264 1.06894 1.81409 1.07544 1.15834 0.81686 0.77790 0.83932 1.90891 1.67713 1.58090 1.30807 1.47359 1.03752 1.76618 1.08211 1.21662 0.94052 0.99231 0.84738 1.21963 0.95838 0.97570 1.00280 1.21234 0.95723 1.01229 0.91694 1.19127 0.91830 0.93021 0.96980 1.21244 1.10388 1.11301 1.12485 0.92559 1.25018 0.97796 0.95232 0.96435 1.69961 1.29794 1.15666 1.38116 0.86641 0.80238 0.78491 0.82903 1.20716 1.21334 1.19904 1.22027 0.96733 0.97840 1.00225 1.21681 0.94282 1.00130 0.84832 0.87187 0.87138 0.90484 0.90545 0.90652 0.90550 0.91556 0.91752 0.76816 0.92114 0.89606 0.89781 0.92375 0.92349 0.96659 0.96651 0.93081 0.92015 0.91124 0.91569 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.47 18.54 42.16 0.78 -3.68 16 2 C 0.21 1.28 15.43 -20.76 -0.32 0.96 16 3 C -0.03 -0.04 5.70 -29.52 -0.17 -0.21 16 4 C -0.11 -0.31 5.17 -26.73 -0.14 -0.45 16 5 C -0.13 -0.43 5.33 -26.73 -0.14 -0.57 16 6 C 0.14 1.05 5.68 -4.04 -0.02 1.03 16 7 N -0.75 -7.41 5.47 -65.23 -0.36 -7.76 16 8 C 0.71 10.30 8.29 -86.91 -0.72 9.58 16 9 O -0.60 -11.01 15.77 5.29 0.08 -10.93 16 10 N -0.62 -8.80 2.97 -178.49 -0.53 -9.33 16 11 C 0.13 1.95 6.43 -3.71 -0.02 1.92 16 12 C -0.12 -2.12 5.21 -26.45 -0.14 -2.26 16 13 C -0.08 -1.49 2.10 -90.41 -0.19 -1.68 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 15 C -0.52 -13.88 8.39 -34.44 -0.29 -14.17 16 16 H 0.06 1.47 7.06 -52.48 -0.37 1.09 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.13 -1.92 5.36 -26.61 -0.14 -2.07 16 24 C 0.11 1.33 6.39 -3.71 -0.02 1.30 16 25 H 0.11 -0.01 8.14 -51.93 -0.42 -0.44 16 26 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 27 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 2.88 5.96 -40.82 -0.24 2.64 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 36 H 0.08 1.61 6.93 -51.93 -0.36 1.25 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.56 5.65 -51.92 -0.29 0.27 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -35.06 367.46 -8.84 -43.90 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.53 Total: -3.72 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.54 Total: -4.61 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.63 Total: -46.39 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.06 -8.84 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.983 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds