Wall clock time and date at job start Tue Mar 31 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47269 * 90.92291 * 3 2 1 5 5 C 1.53004 * 109.47383 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47383 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46938 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99675 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00071 * 4.97931 * 8 7 6 10 10 N 1.34774 * 119.99915 * 184.98301 * 8 7 6 11 11 C 1.46926 * 120.63121 * 174.77166 * 10 8 7 12 12 C 1.53195 * 108.89465 * 126.33965 * 11 10 8 13 13 C 1.53354 * 109.14570 * 54.57617 * 12 11 10 14 14 C 1.53002 * 109.41659 * 178.67459 * 13 12 11 15 15 C 1.50705 * 109.47219 * 295.13248 * 14 13 12 16 16 H 1.08004 * 119.99805 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00149 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47058 * 89.99862 * 19 17 15 21 21 H 1.48501 * 109.47118 * 209.99865 * 19 17 15 22 22 H 1.48503 * 109.47450 * 329.99994 * 19 17 15 23 23 C 1.53040 * 109.60905 * 298.70899 * 13 12 11 24 24 C 1.46926 * 120.63157 * 354.78914 * 10 8 7 25 25 H 1.08999 * 109.47076 * 330.92083 * 3 2 1 26 26 H 1.09004 * 109.46818 * 210.92309 * 3 2 1 27 27 H 1.09007 * 109.46974 * 59.99949 * 4 3 2 28 28 H 1.08998 * 109.47220 * 300.00218 * 4 3 2 29 29 H 1.08999 * 109.46688 * 59.99960 * 5 4 3 30 30 H 1.09004 * 109.47092 * 300.00256 * 5 4 3 31 31 H 1.09007 * 109.46974 * 60.00355 * 6 5 4 32 32 H 1.08998 * 109.47220 * 300.00624 * 6 5 4 33 33 H 0.96993 * 120.00686 * 359.97438 * 7 6 5 34 34 H 1.08999 * 109.58363 * 246.19988 * 11 10 8 35 35 H 1.09002 * 109.58625 * 6.48116 * 11 10 8 36 36 H 1.08997 * 109.49623 * 174.65400 * 12 11 10 37 37 H 1.09002 * 109.49577 * 294.75334 * 12 11 10 38 38 H 1.08994 * 109.42367 * 58.75582 * 13 12 11 39 39 H 1.09008 * 109.47043 * 55.12644 * 14 13 12 40 40 H 1.08992 * 109.47289 * 175.12966 * 14 13 12 41 41 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.50186 * 301.42491 * 23 13 12 43 43 H 1.09004 * 109.52060 * 181.34332 * 23 13 12 44 44 H 1.09010 * 109.58451 * 353.37613 * 24 10 8 45 45 H 1.08999 * 109.58904 * 113.65827 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0241 -1.4423 5 6 4.6480 0.0254 -1.4423 6 6 5.1581 0.0483 -2.8846 7 7 6.6230 0.0489 -2.8845 8 6 7.2970 0.0680 -4.0516 9 8 6.6924 0.1761 -5.1009 10 7 8.6409 -0.0327 -4.0554 11 6 9.3809 -0.1284 -5.3211 12 6 10.4570 0.9615 -5.3503 13 6 11.3316 0.8384 -4.0966 14 6 12.4293 1.9035 -4.1356 15 6 13.3509 1.6329 -5.2969 16 1 13.1718 0.7856 -5.9423 17 6 14.4226 2.4668 -5.5354 18 7 14.6403 3.4988 -4.7497 19 14 15.5653 2.1309 -6.9744 20 1 15.0644 2.8389 -8.1799 21 1 16.9299 2.6162 -6.6466 22 1 15.6098 0.6706 -7.2408 23 6 10.4702 1.0396 -2.8477 24 6 9.3940 -0.0493 -2.7939 25 1 2.9717 -0.8973 0.4995 26 1 2.9709 0.8825 0.5281 27 1 2.7542 0.9222 -1.9417 28 1 2.7551 -0.8576 -1.9704 29 1 5.0121 -0.8723 -0.9427 30 1 5.0106 0.9074 -0.9143 31 1 4.7940 0.9459 -3.3845 32 1 4.7954 -0.8339 -3.4122 33 1 7.1081 0.0364 -2.0446 34 1 9.8514 -1.1087 -5.3960 35 1 8.6953 0.0126 -6.1567 36 1 11.0733 0.8405 -6.2411 37 1 9.9814 1.9421 -5.3667 38 1 11.7870 -0.1514 -4.0681 39 1 11.9763 2.8880 -4.2531 40 1 12.9977 1.8737 -3.2061 41 1 15.3945 4.0853 -4.9174 42 1 9.9947 2.0195 -2.8876 43 1 11.0974 0.9755 -1.9585 44 1 8.7174 0.1464 -1.9619 45 1 9.8636 -1.0240 -2.6614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591928910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:39 Heat of formation + Delta-G solvation = -53.237665 kcal Electronic energy + Delta-G solvation = -22743.707678 eV Core-core repulsion = 19373.224431 eV Total energy + Delta-G solvation = -3370.483246 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37488 -38.90185 -38.06607 -36.75297 -35.68278 -34.69737 -33.80861 -31.96495 -30.50776 -29.41547 -26.39858 -25.21062 -23.91997 -23.36744 -22.27882 -21.36449 -20.33446 -19.06248 -18.39459 -18.18235 -17.25464 -16.98664 -16.53254 -16.31795 -15.68745 -15.31796 -15.19100 -15.03052 -14.69844 -14.64629 -14.44790 -14.24253 -13.98512 -13.81921 -13.51929 -13.33512 -13.00932 -12.86179 -12.69429 -12.48702 -12.42759 -12.30508 -12.16182 -12.05502 -11.93136 -11.75152 -11.38916 -11.29811 -11.22956 -10.98411 -10.76190 -10.49666 -10.13300 -9.36573 -8.14909 -6.23422 1.42075 1.42687 1.53099 1.70593 1.89094 1.90899 2.18992 2.44004 2.98412 3.18919 3.22887 3.92565 3.99736 4.06058 4.13444 4.16198 4.27254 4.42248 4.48102 4.53191 4.59111 4.60371 4.73532 4.85016 4.87284 4.88945 4.94416 5.01717 5.04196 5.12301 5.19407 5.35633 5.37952 5.42477 5.43273 5.47741 5.58678 5.63253 5.67164 5.85181 5.93705 6.08471 6.33004 6.70432 6.93486 7.05625 7.44981 7.62523 8.96677 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041555 B = 0.002194 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.648889 B =12758.082799 C =13110.893881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.234 3.766 3 C -0.020 4.020 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.131 3.869 7 N -0.733 5.733 8 C 0.699 3.301 9 O -0.642 6.642 10 N -0.626 5.626 11 C 0.136 3.864 12 C -0.110 4.110 13 C -0.073 4.073 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.063 0.937 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.957 3.043 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.125 4.125 24 C 0.119 3.881 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.064 0.936 39 H -0.018 1.018 40 H -0.006 1.006 41 H 0.260 0.740 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 -10.320 12.303 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.082 4.082 3 C -0.059 4.059 4 C -0.151 4.151 5 C -0.154 4.154 6 C 0.007 3.993 7 N -0.392 5.392 8 C 0.400 3.600 9 O -0.525 6.525 10 N -0.362 5.362 11 C 0.012 3.988 12 C -0.149 4.149 13 C -0.092 4.092 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.782 3.218 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.163 4.163 24 C -0.003 4.003 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.001 0.999 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.350 -10.135 11.606 24.735 hybrid contribution 1.477 0.592 -0.758 1.762 sum -17.872 -9.543 10.848 22.982 Atomic orbital electron populations 1.81294 1.15828 1.11728 1.10902 1.30144 0.96190 0.90806 0.91036 1.19633 0.78139 1.08701 0.99447 1.21382 0.95029 1.03540 0.95158 1.21696 0.94653 1.05420 0.93626 1.21312 0.77549 1.01162 0.99264 1.45162 1.07696 1.79677 1.06659 1.16101 0.81714 0.77620 0.84569 1.90861 1.68618 1.60097 1.32877 1.47379 1.03911 1.76500 1.08457 1.21421 0.93000 0.98807 0.85554 1.21816 0.96203 0.97583 0.99286 1.21090 0.94785 0.99188 0.94119 1.19033 0.92969 0.93369 0.95152 1.21700 1.10627 1.11207 1.13076 0.91924 1.25915 0.99706 0.95099 0.99221 1.70095 1.30600 1.16801 1.40083 0.85568 0.77929 0.78916 0.79366 1.20378 1.21086 1.18561 1.21940 0.97259 0.98645 0.98462 1.21816 0.93905 0.99737 0.84814 0.84158 0.84454 0.91509 0.91112 0.88368 0.88925 0.93454 0.92756 0.74945 0.90288 0.90889 0.91580 0.94521 0.91730 0.99924 0.98803 0.93084 0.93322 0.89864 0.87524 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -10.56 18.54 20.00 0.37 -10.19 16 2 C 0.23 2.57 15.43 89.44 1.38 3.95 16 3 C -0.02 0.01 5.70 28.79 0.16 0.17 16 4 C -0.11 -0.29 5.17 30.59 0.16 -0.13 16 5 C -0.12 -0.29 5.33 30.59 0.16 -0.13 16 6 C 0.13 1.73 5.68 86.38 0.49 2.22 16 7 N -0.73 -12.28 5.47 -478.54 -2.62 -14.89 16 8 C 0.70 19.23 8.29 179.05 1.49 20.72 16 9 O -0.64 -23.67 15.77 -3.97 -0.06 -23.73 16 10 N -0.63 -16.40 2.97 -836.89 -2.49 -18.89 16 11 C 0.14 4.09 6.43 86.36 0.56 4.64 16 12 C -0.11 -4.01 5.21 30.78 0.16 -3.85 16 13 C -0.07 -2.70 2.10 -10.66 -0.02 -2.73 16 14 C 0.03 1.59 4.45 29.85 0.13 1.72 16 15 C -0.53 -28.83 8.39 25.60 0.21 -28.62 16 16 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 17 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 18 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 19 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 C -0.12 -3.47 5.36 30.67 0.16 -3.31 16 24 C 0.12 2.34 6.39 86.36 0.55 2.89 16 25 H 0.14 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.14 -0.65 8.14 -2.38 -0.02 -0.67 16 27 H 0.07 0.33 8.14 -2.38 -0.02 0.32 16 28 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.41 4.09 5.96 -92.71 -0.55 3.53 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.41 6.99 -2.39 -0.02 2.39 16 36 H 0.07 2.59 6.93 -2.39 -0.02 2.58 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 40 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.11 1.25 5.65 -2.38 -0.01 1.24 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -81.39 367.46 4.00 -77.40 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 0.42 Total: 2.53 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.06 Total: -2.11 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -4.45 Total: -99.92 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -81.39 4.00 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.161 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds