Wall clock time and date at job start Tue Mar 31 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46864 * 299.99553 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99440 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 C 1.53004 * 109.47231 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47583 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47325 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.34953 * 126.03155 * 124.71699 * 19 18 17 21 21 C 1.35321 * 107.73854 * 179.83843 * 20 19 18 22 22 C 1.39865 * 107.92293 * 0.42706 * 21 20 19 23 23 N 1.30842 * 108.20252 * 359.73588 * 22 21 20 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 26 26 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 28 28 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 32 32 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 33 33 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 34 34 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 35 35 H 1.09001 * 109.46812 * 300.00718 * 16 15 14 36 36 H 1.09002 * 109.47047 * 59.99836 * 16 15 14 37 37 H 1.08997 * 109.47225 * 300.00479 * 17 16 15 38 38 H 1.09004 * 109.46572 * 59.99787 * 17 16 15 39 39 H 1.08997 * 109.47494 * 300.00479 * 18 17 16 40 40 H 1.08997 * 109.46704 * 60.00294 * 18 17 16 41 41 H 1.07991 * 126.12885 * 0.02562 * 20 19 18 42 42 H 1.07998 * 126.03257 * 180.15929 * 21 20 19 43 43 H 1.07998 * 125.90131 * 179.75812 * 22 21 20 44 44 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 45 45 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 6 3.5983 -7.0491 -3.4057 17 6 3.9044 -7.2732 -4.8879 18 6 4.4041 -8.7045 -5.0947 19 7 4.6966 -8.9193 -6.5141 20 6 5.8700 -9.3447 -7.0273 21 6 5.7305 -9.4163 -8.3714 22 6 4.4304 -9.0116 -8.6912 23 7 3.8098 -8.7134 -7.5787 24 6 2.2350 -3.6865 -0.0722 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2327 -1.9035 1.2436 27 1 -0.6629 -2.7545 -1.0032 28 1 0.5035 -1.7313 -1.8934 29 1 0.3255 -4.7428 -1.7457 30 1 0.9060 -3.7050 -3.0847 31 1 3.6996 -5.5501 -1.1310 32 1 2.0260 -6.0964 -1.3934 33 1 2.1933 -5.4609 -3.7843 34 1 3.8669 -4.9146 -3.5219 35 1 4.5041 -7.2062 -2.8201 36 1 2.8303 -7.7519 -3.0826 37 1 2.9989 -7.1159 -5.4738 38 1 4.6726 -6.5704 -5.2105 39 1 5.3097 -8.8614 -4.5089 40 1 3.6362 -9.4075 -4.7720 41 1 6.7598 -9.5878 -6.4656 42 1 6.4903 -9.7265 -9.0734 43 1 4.0111 -8.9553 -9.6849 44 1 3.2146 -3.3920 0.3043 45 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:31 Heat of formation + Delta-G solvation = 18.549368 kcal Electronic energy + Delta-G solvation = -22867.735089 eV Core-core repulsion = 19500.364762 eV Total energy + Delta-G solvation = -3367.370327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33012 -38.45472 -36.44905 -34.89847 -33.02763 -32.06482 -30.71912 -30.06019 -28.38593 -27.75750 -25.48727 -24.13450 -22.38187 -21.46550 -21.05849 -20.69793 -20.01318 -19.30985 -17.42201 -16.98788 -16.14272 -15.44911 -15.08506 -14.89240 -14.72852 -14.43305 -14.14447 -13.77275 -13.71755 -13.32526 -12.99528 -12.90763 -12.48330 -12.31664 -12.23665 -11.88247 -11.55485 -11.33003 -11.22100 -11.10211 -10.90496 -10.81169 -10.72963 -10.54556 -10.42268 -10.29322 -10.21696 -9.87821 -9.65351 -8.99922 -8.83696 -8.53898 -8.08939 -7.78947 -6.13370 -4.18577 1.66864 2.27724 2.62015 3.26761 3.35031 3.40367 4.14280 4.37859 4.42907 4.56363 4.69362 4.78214 4.88590 4.95830 5.11119 5.15649 5.28237 5.37039 5.47105 5.53621 5.62124 5.69646 5.74877 5.79327 5.85266 5.90116 5.98769 6.04030 6.14702 6.22850 6.35476 6.35836 6.41441 6.50594 6.55494 6.76792 6.90433 7.10084 7.26132 7.47555 7.60029 7.70501 7.76500 7.89806 8.25760 8.84167 9.45837 9.54677 10.94228 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.002319 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.185930 B =12071.000097 C =12435.997956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.033 3.967 13 N -0.502 5.502 14 C 0.045 3.955 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.132 3.868 19 N -0.370 5.370 20 C 0.051 3.949 21 C -0.279 4.279 22 C 0.040 3.960 23 N -0.293 5.293 24 C 0.053 3.947 25 H 0.264 0.736 26 H 0.382 0.618 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.172 0.828 42 H 0.145 0.855 43 H 0.181 0.819 44 H 0.075 0.925 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -17.809 -11.732 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.208 3.792 10 O -0.404 6.404 11 C -0.160 4.160 12 C -0.095 4.095 13 N -0.226 5.226 14 C -0.084 4.084 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.167 4.167 18 C 0.011 3.989 19 N -0.152 5.152 20 C -0.096 4.096 21 C -0.309 4.309 22 C -0.146 4.146 23 N -0.115 5.115 24 C -0.074 4.074 25 H 0.074 0.926 26 H 0.232 0.768 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.189 0.811 42 H 0.163 0.837 43 H 0.198 0.802 44 H 0.094 0.906 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.508 -17.446 -11.217 22.418 hybrid contribution 0.349 0.549 -0.177 0.674 sum 8.857 -16.897 -11.395 22.222 Atomic orbital electron populations 1.69709 1.05895 1.27125 1.51427 1.25020 0.94998 0.99427 0.94259 0.86419 0.80202 0.83163 0.77483 1.19696 1.21004 1.21034 1.21679 0.93559 0.90363 1.49814 0.91966 1.19274 0.86470 0.91612 0.81868 1.86081 1.52112 1.55751 1.46487 1.22848 0.98209 0.95620 0.99280 1.23189 0.88513 0.98291 0.99504 1.65308 1.21366 1.21144 1.14819 1.22245 0.99590 0.90320 0.96242 1.21482 1.01744 0.95141 0.96481 1.21502 1.01366 0.98002 0.94488 1.21864 1.02760 0.94281 0.97844 1.21858 1.02599 0.99100 0.75376 1.48857 1.08871 1.50610 1.06860 1.22604 0.91212 1.00431 0.95310 1.21516 0.99067 1.15434 0.94843 1.23907 0.93811 0.99171 0.97728 1.77376 1.16688 1.23490 0.93928 1.22971 1.00255 0.97244 0.86969 0.92566 0.76764 0.93181 0.90672 0.95465 0.91665 0.91462 0.95363 0.91967 0.91104 0.91731 0.91813 0.90353 0.91298 0.88625 0.89737 0.81072 0.83689 0.80163 0.90621 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 10.81 55.43 0.60 -23.90 16 2 C 0.06 1.73 5.02 -17.82 -0.09 1.64 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.13 8.10 -34.44 -0.28 -14.41 16 8 H 0.06 1.72 7.53 -52.49 -0.40 1.33 16 9 C 0.25 6.29 1.05 -90.39 -0.10 6.19 16 10 O -0.60 -15.77 12.94 -35.23 -0.46 -16.23 16 11 C -0.12 -2.87 5.55 -25.35 -0.14 -3.01 16 12 C 0.03 0.65 5.93 -2.09 -0.01 0.64 16 13 N -0.50 -9.91 5.34 -229.83 -1.23 -11.13 16 14 C 0.04 0.69 4.83 -3.82 -0.02 0.67 16 15 C -0.11 -1.41 5.33 -26.73 -0.14 -1.55 16 16 C -0.11 -1.08 5.21 -26.73 -0.14 -1.22 16 17 C -0.13 -1.19 5.40 -26.73 -0.14 -1.34 16 18 C 0.13 1.02 6.51 -4.04 -0.03 0.99 16 19 N -0.37 -3.66 3.68 -61.37 -0.23 -3.89 16 20 C 0.05 0.41 11.45 -17.22 -0.20 0.21 16 21 C -0.28 -2.32 10.80 -40.01 -0.43 -2.75 16 22 C 0.04 0.38 12.03 -17.37 -0.21 0.17 16 23 N -0.29 -3.49 12.42 30.62 0.38 -3.11 16 24 C 0.05 1.18 5.74 -2.18 -0.01 1.17 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.38 10.21 7.32 45.56 0.33 10.55 16 27 H 0.05 1.19 7.98 -51.93 -0.41 0.78 16 28 H 0.07 1.95 7.23 -51.93 -0.38 1.57 16 29 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 30 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.03 0.43 7.77 -51.93 -0.40 0.02 16 33 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.50 8.07 -51.93 -0.42 0.08 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.08 1.68 7.67 -51.93 -0.40 1.29 16 45 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.71 363.01 -9.46 -40.18 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.04 Total: 9.06 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.94 Total: -12.59 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.47 Total: -42.04 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.46 Total: -16.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.71 -9.46 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.725 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds