Wall clock time and date at job start Tue Mar 31 2020 07:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46864 * 299.99553 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99440 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 C 1.53004 * 109.47231 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47583 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47325 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.34953 * 126.03155 * 124.71699 * 19 18 17 21 21 C 1.35321 * 107.73854 * 179.83843 * 20 19 18 22 22 C 1.39865 * 107.92293 * 0.42706 * 21 20 19 23 23 N 1.30842 * 108.20252 * 359.73588 * 22 21 20 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 26 26 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 28 28 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 32 32 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 33 33 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 34 34 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 35 35 H 1.09001 * 109.46812 * 300.00718 * 16 15 14 36 36 H 1.09002 * 109.47047 * 59.99836 * 16 15 14 37 37 H 1.08997 * 109.47225 * 300.00479 * 17 16 15 38 38 H 1.09004 * 109.46572 * 59.99787 * 17 16 15 39 39 H 1.08997 * 109.47494 * 300.00479 * 18 17 16 40 40 H 1.08997 * 109.46704 * 60.00294 * 18 17 16 41 41 H 1.07991 * 126.12885 * 0.02562 * 20 19 18 42 42 H 1.07998 * 126.03257 * 180.15929 * 21 20 19 43 43 H 1.07998 * 125.90131 * 179.75812 * 22 21 20 44 44 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 45 45 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 6 3.5983 -7.0491 -3.4057 17 6 3.9044 -7.2732 -4.8879 18 6 4.4041 -8.7045 -5.0947 19 7 4.6966 -8.9193 -6.5141 20 6 5.8700 -9.3447 -7.0273 21 6 5.7305 -9.4163 -8.3714 22 6 4.4304 -9.0116 -8.6912 23 7 3.8098 -8.7134 -7.5787 24 6 2.2350 -3.6865 -0.0722 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2327 -1.9035 1.2436 27 1 -0.6629 -2.7545 -1.0032 28 1 0.5035 -1.7313 -1.8934 29 1 0.3255 -4.7428 -1.7457 30 1 0.9060 -3.7050 -3.0847 31 1 3.6996 -5.5501 -1.1310 32 1 2.0260 -6.0964 -1.3934 33 1 2.1933 -5.4609 -3.7843 34 1 3.8669 -4.9146 -3.5219 35 1 4.5041 -7.2062 -2.8201 36 1 2.8303 -7.7519 -3.0826 37 1 2.9989 -7.1159 -5.4738 38 1 4.6726 -6.5704 -5.2105 39 1 5.3097 -8.8614 -4.5089 40 1 3.6362 -9.4075 -4.7720 41 1 6.7598 -9.5878 -6.4656 42 1 6.4903 -9.7265 -9.0734 43 1 4.0111 -8.9553 -9.6849 44 1 3.2146 -3.3920 0.3043 45 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:30 Heat of formation + Delta-G solvation = -2.367231 kcal Electronic energy + Delta-G solvation = -22868.642101 eV Core-core repulsion = 19500.364762 eV Total energy + Delta-G solvation = -3368.277339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96067 -40.13765 -37.55986 -36.36274 -34.16960 -34.03640 -31.83624 -30.89182 -29.88115 -29.30301 -26.88540 -25.62500 -23.51103 -22.33496 -21.83906 -21.64030 -21.27225 -21.11227 -19.04095 -18.03316 -17.07169 -16.92179 -16.81740 -16.18918 -15.94426 -15.71191 -15.30414 -15.13473 -14.63952 -14.45476 -14.16447 -14.01847 -13.82454 -13.57410 -13.50951 -13.20206 -13.03573 -12.92133 -12.67606 -12.44647 -12.35776 -12.22314 -12.06985 -11.95671 -11.81179 -11.69938 -11.50386 -11.36490 -10.93551 -10.60514 -10.34335 -10.13018 -9.46938 -9.33732 -8.19449 -6.32037 1.04081 1.39159 1.42050 1.53255 1.70316 1.99014 2.40501 2.95407 3.14949 3.58827 3.87847 3.92751 3.99749 4.05053 4.12848 4.20867 4.26853 4.31486 4.37002 4.44949 4.52976 4.56302 4.58769 4.69795 4.78996 4.82047 4.84565 4.91591 4.96684 4.99580 5.05596 5.18048 5.19240 5.25553 5.34717 5.40292 5.46903 5.65151 5.77701 5.79494 5.98585 6.18338 6.21571 6.30481 6.73025 6.82137 7.35789 7.43659 8.86698 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.002319 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.185930 B =12071.000097 C =12435.997956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.229 3.771 10 O -0.602 6.602 11 C -0.114 4.114 12 C 0.043 3.957 13 N -0.513 5.513 14 C 0.044 3.956 15 C -0.104 4.104 16 C -0.103 4.103 17 C -0.120 4.120 18 C 0.130 3.870 19 N -0.381 5.381 20 C 0.052 3.948 21 C -0.291 4.291 22 C 0.029 3.971 23 N -0.344 5.344 24 C 0.061 3.939 25 H 0.267 0.733 26 H 0.376 0.624 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.208 0.792 42 H 0.166 0.834 43 H 0.199 0.801 44 H 0.070 0.930 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 -19.172 -12.102 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.189 3.811 10 O -0.411 6.411 11 C -0.153 4.153 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.158 4.158 18 C 0.009 3.991 19 N -0.163 5.163 20 C -0.095 4.095 21 C -0.320 4.320 22 C -0.156 4.156 23 N -0.166 5.166 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.226 0.774 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.224 0.776 42 H 0.184 0.816 43 H 0.216 0.784 44 H 0.089 0.911 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.229 -18.827 -11.594 24.362 hybrid contribution -0.180 0.966 -0.076 0.986 sum 10.050 -17.861 -11.670 23.584 Atomic orbital electron populations 1.69787 1.06763 1.27889 1.51256 1.25704 0.95865 1.02275 0.93844 0.85492 0.78939 0.79469 0.77585 1.19635 1.20583 1.20463 1.21876 0.93250 0.91847 1.50726 0.93034 1.19564 0.87124 0.92457 0.81921 1.86073 1.52119 1.55463 1.47408 1.22640 0.97611 0.96363 0.98651 1.23079 0.88822 0.96836 0.99743 1.65290 1.21047 1.24479 1.12931 1.22378 1.00092 0.87810 0.98086 1.21421 1.01087 0.97303 0.94431 1.21397 1.02387 0.95644 0.94756 1.21704 1.01375 0.95431 0.97288 1.21993 1.04287 0.97760 0.75019 1.49047 1.09220 1.50934 1.07132 1.23260 0.91565 0.98980 0.95668 1.21886 0.99032 1.15465 0.95657 1.24383 0.94586 0.98514 0.98139 1.77307 1.18556 1.25569 0.95185 1.22799 0.98951 0.96112 0.88784 0.92349 0.77410 0.94154 0.93555 0.93996 0.90324 0.90227 0.94534 0.93043 0.92114 0.89765 0.90884 0.92787 0.92244 0.85412 0.89385 0.77555 0.81636 0.78434 0.91145 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.42 10.81 21.45 0.23 -50.19 16 2 C 0.02 1.22 5.02 84.66 0.43 1.65 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -29.90 8.10 25.60 0.21 -29.70 16 8 H 0.05 2.89 7.53 -2.91 -0.02 2.87 16 9 C 0.23 11.74 1.05 -10.65 -0.01 11.73 16 10 O -0.60 -32.36 12.94 -148.98 -1.93 -34.29 16 11 C -0.11 -5.48 5.55 31.49 0.17 -5.30 16 12 C 0.04 1.68 5.93 86.42 0.51 2.19 16 13 N -0.51 -19.70 5.34 -881.04 -4.70 -24.40 16 14 C 0.04 1.26 4.83 86.30 0.42 1.68 16 15 C -0.10 -2.49 5.33 30.60 0.16 -2.33 16 16 C -0.10 -1.67 5.21 30.59 0.16 -1.51 16 17 C -0.12 -2.04 5.40 30.59 0.17 -1.87 16 18 C 0.13 1.71 6.51 86.38 0.56 2.27 16 19 N -0.38 -6.95 3.68 -348.06 -1.28 -8.23 16 20 C 0.05 0.71 11.45 83.54 0.96 1.66 16 21 C -0.29 -4.32 10.80 21.99 0.24 -4.08 16 22 C 0.03 0.54 12.03 85.23 1.02 1.56 16 23 N -0.34 -8.09 12.42 -57.03 -0.71 -8.80 16 24 C 0.06 2.70 5.74 86.45 0.50 3.20 16 25 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.38 20.62 7.32 -74.06 -0.54 20.08 16 27 H 0.04 1.96 7.98 -2.39 -0.02 1.94 16 28 H 0.05 2.45 7.23 -2.39 -0.02 2.43 16 29 H 0.04 1.52 7.75 -2.38 -0.02 1.50 16 30 H 0.08 2.85 7.86 -2.39 -0.02 2.83 16 31 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 32 H 0.04 1.00 7.77 -2.39 -0.02 0.98 16 33 H 0.05 1.33 7.47 -2.39 -0.02 1.31 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.13 0.84 8.07 -2.39 -0.02 0.82 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.21 1.10 8.06 -2.92 -0.02 1.08 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 44 H 0.07 3.12 7.67 -2.39 -0.02 3.10 16 45 H 0.03 1.45 7.94 -2.39 -0.02 1.43 16 Total: -1.00 -66.93 363.01 -0.46 -67.38 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.41 Total: 31.76 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.49 Total: -18.85 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -6.46 Total: -91.62 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.93 Total: -34.29 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.93 -0.46 -67.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.014 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds