Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00367 * 2 1 4 4 C 1.53005 * 109.46905 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47284 * 63.09600 * 4 3 2 6 6 C 1.46507 * 119.99551 * 264.90513 * 5 4 3 7 7 C 1.50696 * 109.47152 * 270.00285 * 6 5 4 8 8 H 1.07997 * 120.00112 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99628 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99861 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00245 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47200 * 90.00330 * 11 9 7 13 13 H 1.48504 * 109.47073 * 210.00137 * 11 9 7 14 14 H 1.48494 * 109.47333 * 330.00176 * 11 9 7 15 15 C 1.34776 * 120.00713 * 84.90825 * 5 4 3 16 16 O 1.21287 * 119.99402 * 5.15479 * 15 5 4 17 17 C 1.50693 * 120.00420 * 185.15606 * 15 5 4 18 18 H 1.08998 * 109.44832 * 35.78627 * 17 15 5 19 19 C 1.53036 * 109.45812 * 275.82662 * 17 15 5 20 20 C 1.53401 * 109.54964 * 239.97474 * 19 17 15 21 21 H 1.08994 * 110.76340 * 177.07333 * 20 19 17 22 22 C 1.52151 * 107.84352 * 55.70380 * 20 19 17 23 23 C 1.33092 * 113.76211 * 301.72007 * 22 20 19 24 24 C 1.52145 * 113.75765 * 0.02562 * 23 22 20 25 25 H 1.08998 * 110.77533 * 179.63880 * 24 23 22 26 26 C 1.53491 * 107.68141 * 301.58850 * 24 23 22 27 27 C 1.53494 * 108.31672 * 298.73418 * 20 19 17 28 28 H 1.08996 * 109.47742 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46838 * 300.00611 * 1 2 3 30 30 H 1.08996 * 109.46896 * 59.99725 * 1 2 3 31 31 H 1.08992 * 109.47016 * 60.00331 * 3 2 1 32 32 H 1.09000 * 109.46609 * 299.99791 * 3 2 1 33 33 H 1.09001 * 109.47045 * 303.09026 * 4 3 2 34 34 H 1.09005 * 109.46923 * 183.09385 * 4 3 2 35 35 H 1.09000 * 109.46798 * 30.00420 * 6 5 4 36 36 H 1.09007 * 109.46734 * 150.00154 * 6 5 4 37 37 H 0.97004 * 119.99917 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.45790 * 119.95170 * 19 17 15 39 39 H 1.09003 * 109.44544 * 359.97438 * 19 17 15 40 40 H 1.08006 * 123.12043 * 121.03026 * 22 20 19 41 41 H 1.07999 * 123.12180 * 179.97438 * 23 22 20 42 42 H 1.09003 * 109.46492 * 175.83546 * 26 24 23 43 43 H 1.08998 * 109.46265 * 295.81222 * 26 24 23 44 44 H 1.08997 * 109.46312 * 181.28176 * 27 20 19 45 45 H 1.09002 * 109.45693 * 301.24236 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9725 0.5230 -1.2326 6 6 4.2093 -0.9227 -1.2434 7 6 5.6464 -1.1990 -0.8839 8 1 6.3165 -0.3797 -0.6694 9 6 6.1061 -2.4978 -0.8301 10 7 7.3604 -2.7390 -0.5168 11 14 4.9472 -3.9149 -1.2019 12 1 4.9913 -4.2224 -2.6541 13 1 5.3657 -5.1123 -0.4295 14 1 3.5636 -3.5367 -0.8178 15 6 4.1566 1.2444 -2.3561 16 8 4.0518 2.4524 -2.3250 17 6 4.4927 0.5503 -3.6507 18 1 3.9639 -0.4015 -3.7001 19 6 6.0009 0.2995 -3.7181 20 6 6.5860 1.0147 -4.9426 21 1 7.6683 0.8919 -4.9813 22 6 6.2130 2.4866 -4.8452 23 6 4.9013 2.7047 -4.7866 24 6 4.0661 1.4337 -4.8294 25 1 3.0031 1.6676 -4.7723 26 6 4.4061 0.6961 -6.1318 27 6 5.9270 0.4336 -6.2012 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8537 0.5963 0.8601 34 1 3.9789 2.1787 0.0548 35 1 3.5541 -1.4036 -0.5170 36 1 4.0011 -1.3175 -2.2379 37 1 7.6837 -3.6528 -0.4786 38 1 6.1877 -0.7713 -3.7994 39 1 6.4733 0.6831 -2.8138 40 1 6.9450 3.2801 -4.8145 41 1 4.4700 3.6922 -4.7145 42 1 3.8781 -0.2571 -6.1579 43 1 4.1009 1.3037 -6.9837 44 1 6.3465 0.9136 -7.0854 45 1 6.1149 -0.6392 -6.2470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593450958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -66.319816 kcal Electronic energy + Delta-G solvation = -25488.876081 eV Core-core repulsion = 22085.532798 eV Total energy + Delta-G solvation = -3403.343282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59104 -38.46062 -37.29206 -34.94303 -32.53627 -31.25853 -30.59276 -30.35368 -29.42388 -27.50053 -26.05202 -23.58281 -22.43355 -22.05339 -21.57221 -20.90463 -18.31546 -17.03165 -16.73516 -16.46524 -16.06054 -15.79695 -15.62930 -15.23200 -14.87466 -14.29073 -14.20679 -13.67954 -13.50716 -12.64122 -12.56139 -12.51738 -12.14548 -12.00983 -11.88055 -11.77128 -11.72500 -11.63290 -11.53946 -11.30272 -11.05489 -10.96855 -10.78137 -10.48701 -10.21094 -10.14991 -9.73863 -9.53569 -9.48166 -9.42469 -8.89066 -8.62105 -8.32712 -7.65519 -6.14006 -4.13377 2.75206 3.22598 3.31719 3.35586 3.43226 3.86138 4.07832 4.34391 4.92031 5.02077 5.02510 5.17780 5.30099 5.35288 5.43114 5.47652 5.54578 5.57453 5.62553 5.66200 5.68344 5.73218 5.76390 5.81277 5.87290 5.94949 6.03086 6.16820 6.19581 6.33560 6.34598 6.44841 6.49048 6.54923 6.63203 6.72260 6.89316 6.98433 7.10400 7.36066 7.42012 7.45392 7.55746 8.23459 8.50511 8.90204 9.02989 9.46578 10.98567 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.007913 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.283252 B = 3537.476718 C = 5107.117050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.211 3.789 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.893 5.893 11 Si 0.865 3.135 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.524 3.476 16 O -0.566 6.566 17 C -0.093 4.093 18 H 0.090 0.910 19 C -0.086 4.086 20 C -0.061 4.061 21 H 0.076 0.924 22 C -0.182 4.182 23 C -0.117 4.117 24 C -0.045 4.045 25 H 0.075 0.925 26 C -0.110 4.110 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 5.829 -6.693 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.090 3.910 7 C -0.570 4.570 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.692 3.308 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.313 3.687 16 O -0.446 6.446 17 C -0.114 4.114 18 H 0.108 0.892 19 C -0.124 4.124 20 C -0.080 4.080 21 H 0.094 0.906 22 C -0.200 4.200 23 C -0.135 4.135 24 C -0.064 4.064 25 H 0.093 0.907 26 C -0.147 4.147 27 C -0.148 4.148 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.845 6.090 -6.618 12.614 hybrid contribution -0.692 -0.707 0.099 0.995 sum -9.537 5.383 -6.519 12.745 Atomic orbital electron populations 1.22681 0.82132 1.02292 0.99346 1.88009 1.18705 1.27854 1.95253 1.23057 0.95421 0.84670 0.99854 1.21315 0.90706 0.99322 0.88763 1.47813 1.64771 1.10208 1.08555 1.19843 0.97589 0.76011 0.97542 1.21375 0.93916 0.93858 1.47841 0.90505 1.24818 0.94812 0.98413 0.94560 1.69898 1.14555 1.20531 1.48131 0.87009 0.82280 0.82648 0.78912 1.19980 1.21094 1.18563 1.20454 0.75695 0.87048 0.85546 1.90564 1.53609 1.14256 1.86215 1.21383 0.99149 0.99025 0.91876 0.89223 1.21486 0.92000 1.01145 0.97763 1.20689 0.99441 0.92840 0.95027 0.90553 1.23600 0.96189 0.96312 1.03895 1.23465 0.94710 0.97239 0.98049 1.20499 0.98840 0.93501 0.93541 0.90703 1.21871 0.96428 0.99793 0.96618 1.21915 0.95005 1.00538 0.97349 0.89997 0.94565 0.94601 0.93118 0.93321 0.89382 0.89461 0.94080 0.95552 0.92557 0.90321 0.90659 0.87124 0.86972 0.91892 0.92024 0.92275 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.43 9.99 -35.23 -0.35 -6.79 16 3 C 0.05 0.76 6.26 37.16 0.23 0.99 16 4 C 0.12 2.26 5.80 -4.04 -0.02 2.24 16 5 N -0.58 -12.16 2.39 -175.05 -0.42 -12.58 16 6 C 0.21 4.79 3.83 -5.19 -0.02 4.77 16 7 C -0.53 -13.90 8.83 -34.44 -0.30 -14.20 16 8 H 0.08 2.25 8.05 -52.49 -0.42 1.83 16 9 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 10 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 11 Si 0.86 20.12 27.47 -169.99 -4.67 15.45 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 15 C 0.52 10.75 6.37 -10.99 -0.07 10.68 16 16 O -0.57 -12.28 14.24 5.55 0.08 -12.20 16 17 C -0.09 -1.71 1.77 -91.57 -0.16 -1.87 16 18 H 0.09 1.64 6.25 -51.93 -0.32 1.31 16 19 C -0.09 -1.63 4.32 -26.50 -0.11 -1.74 16 20 C -0.06 -0.98 3.54 -90.59 -0.32 -1.30 16 21 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 22 C -0.18 -2.91 9.83 -35.38 -0.35 -3.25 16 23 C -0.12 -1.90 7.74 -35.38 -0.27 -2.17 16 24 C -0.04 -0.71 2.90 -90.61 -0.26 -0.98 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 C -0.11 -1.47 5.70 -25.69 -0.15 -1.62 16 27 C -0.11 -1.51 5.80 -25.69 -0.15 -1.66 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.64 8.03 -51.93 -0.42 1.23 16 34 H 0.09 1.58 7.51 -51.93 -0.39 1.19 16 35 H 0.04 0.97 6.63 -51.93 -0.34 0.62 16 36 H 0.03 0.59 5.26 -51.93 -0.27 0.32 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.66 7.32 -51.93 -0.38 1.28 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -29.93 349.13 -7.91 -37.84 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.64 Total: 4.73 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.95 Total: -6.62 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.36 Total: -37.68 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.27 Total: -18.98 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.93 -7.91 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593450958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.482 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds