Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00367 * 2 1 4 4 C 1.53005 * 109.46905 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47284 * 63.09600 * 4 3 2 6 6 C 1.46507 * 119.99551 * 264.90513 * 5 4 3 7 7 C 1.50696 * 109.47152 * 270.00285 * 6 5 4 8 8 H 1.07997 * 120.00112 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99628 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99861 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00245 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47200 * 90.00330 * 11 9 7 13 13 H 1.48504 * 109.47073 * 210.00137 * 11 9 7 14 14 H 1.48494 * 109.47333 * 330.00176 * 11 9 7 15 15 C 1.34776 * 120.00713 * 84.90825 * 5 4 3 16 16 O 1.21287 * 119.99402 * 5.15479 * 15 5 4 17 17 C 1.50693 * 120.00420 * 185.15606 * 15 5 4 18 18 H 1.08998 * 109.44832 * 35.78627 * 17 15 5 19 19 C 1.53036 * 109.45812 * 275.82662 * 17 15 5 20 20 C 1.53401 * 109.54964 * 239.97474 * 19 17 15 21 21 H 1.08994 * 110.76340 * 177.07333 * 20 19 17 22 22 C 1.52151 * 107.84352 * 55.70380 * 20 19 17 23 23 C 1.33092 * 113.76211 * 301.72007 * 22 20 19 24 24 C 1.52145 * 113.75765 * 0.02562 * 23 22 20 25 25 H 1.08998 * 110.77533 * 179.63880 * 24 23 22 26 26 C 1.53491 * 107.68141 * 301.58850 * 24 23 22 27 27 C 1.53494 * 108.31672 * 298.73418 * 20 19 17 28 28 H 1.08996 * 109.47742 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46838 * 300.00611 * 1 2 3 30 30 H 1.08996 * 109.46896 * 59.99725 * 1 2 3 31 31 H 1.08992 * 109.47016 * 60.00331 * 3 2 1 32 32 H 1.09000 * 109.46609 * 299.99791 * 3 2 1 33 33 H 1.09001 * 109.47045 * 303.09026 * 4 3 2 34 34 H 1.09005 * 109.46923 * 183.09385 * 4 3 2 35 35 H 1.09000 * 109.46798 * 30.00420 * 6 5 4 36 36 H 1.09007 * 109.46734 * 150.00154 * 6 5 4 37 37 H 0.97004 * 119.99917 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.45790 * 119.95170 * 19 17 15 39 39 H 1.09003 * 109.44544 * 359.97438 * 19 17 15 40 40 H 1.08006 * 123.12043 * 121.03026 * 22 20 19 41 41 H 1.07999 * 123.12180 * 179.97438 * 23 22 20 42 42 H 1.09003 * 109.46492 * 175.83546 * 26 24 23 43 43 H 1.08998 * 109.46265 * 295.81222 * 26 24 23 44 44 H 1.08997 * 109.46312 * 181.28176 * 27 20 19 45 45 H 1.09002 * 109.45693 * 301.24236 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9725 0.5230 -1.2326 6 6 4.2093 -0.9227 -1.2434 7 6 5.6464 -1.1990 -0.8839 8 1 6.3165 -0.3797 -0.6694 9 6 6.1061 -2.4978 -0.8301 10 7 7.3604 -2.7390 -0.5168 11 14 4.9472 -3.9149 -1.2019 12 1 4.9913 -4.2224 -2.6541 13 1 5.3657 -5.1123 -0.4295 14 1 3.5636 -3.5367 -0.8178 15 6 4.1566 1.2444 -2.3561 16 8 4.0518 2.4524 -2.3250 17 6 4.4927 0.5503 -3.6507 18 1 3.9639 -0.4015 -3.7001 19 6 6.0009 0.2995 -3.7181 20 6 6.5860 1.0147 -4.9426 21 1 7.6683 0.8919 -4.9813 22 6 6.2130 2.4866 -4.8452 23 6 4.9013 2.7047 -4.7866 24 6 4.0661 1.4337 -4.8294 25 1 3.0031 1.6676 -4.7723 26 6 4.4061 0.6961 -6.1318 27 6 5.9270 0.4336 -6.2012 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8537 0.5963 0.8601 34 1 3.9789 2.1787 0.0548 35 1 3.5541 -1.4036 -0.5170 36 1 4.0011 -1.3175 -2.2379 37 1 7.6837 -3.6528 -0.4786 38 1 6.1877 -0.7713 -3.7994 39 1 6.4733 0.6831 -2.8138 40 1 6.9450 3.2801 -4.8145 41 1 4.4700 3.6922 -4.7145 42 1 3.8781 -0.2571 -6.1579 43 1 4.1009 1.3037 -6.9837 44 1 6.3465 0.9136 -7.0854 45 1 6.1149 -0.6392 -6.2470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593450958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -83.498739 kcal Electronic energy + Delta-G solvation = -25489.621015 eV Core-core repulsion = 22085.532798 eV Total energy + Delta-G solvation = -3404.088216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01645 -39.89702 -38.58513 -36.65925 -34.53751 -32.72126 -31.89058 -31.52211 -30.94870 -29.26891 -27.16940 -24.99743 -24.34779 -23.35122 -22.89014 -22.17503 -19.91684 -19.02908 -18.24925 -17.82963 -17.52340 -17.08908 -16.94207 -16.50838 -16.37720 -15.86327 -15.59244 -15.12226 -15.06797 -14.51653 -13.92338 -13.85092 -13.70497 -13.53415 -13.21497 -13.08336 -13.05405 -13.00344 -12.77895 -12.74725 -12.69176 -12.46492 -12.28220 -12.04025 -11.92569 -11.65187 -11.48793 -10.98738 -10.78396 -10.70293 -10.64041 -10.38730 -9.66132 -9.37193 -8.25160 -6.29626 1.39088 1.42274 1.47157 1.52510 1.79459 2.30732 2.37370 2.89719 3.09034 3.60399 3.66899 3.77822 4.03920 4.12189 4.19027 4.24387 4.31360 4.37440 4.40214 4.41912 4.52781 4.54250 4.56159 4.58297 4.63331 4.65847 4.78276 4.83235 4.86726 4.90432 5.03702 5.12295 5.18849 5.19334 5.21930 5.31659 5.40499 5.43350 5.50422 5.72815 5.82355 6.15133 6.21962 6.27893 6.67116 6.75397 7.29935 7.40927 8.90944 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.007913 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.283252 B = 3537.476718 C = 5107.117050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.227 3.773 7 C -0.524 4.524 8 H 0.029 0.971 9 C 0.024 3.976 10 N -0.941 5.941 11 Si 0.930 3.070 12 H -0.259 1.259 13 H -0.286 1.286 14 H -0.245 1.245 15 C 0.518 3.482 16 O -0.580 6.580 17 C -0.093 4.093 18 H 0.092 0.908 19 C -0.078 4.078 20 C -0.062 4.062 21 H 0.078 0.922 22 C -0.188 4.188 23 C -0.124 4.124 24 C -0.043 4.043 25 H 0.081 0.919 26 C -0.105 4.105 27 C -0.107 4.107 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 5.403 -8.328 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.104 3.896 7 C -0.563 4.563 8 H 0.047 0.953 9 C -0.175 4.175 10 N -0.581 5.581 11 Si 0.754 3.246 12 H -0.183 1.183 13 H -0.212 1.212 14 H -0.169 1.169 15 C 0.307 3.693 16 O -0.461 6.461 17 C -0.114 4.114 18 H 0.110 0.890 19 C -0.116 4.116 20 C -0.080 4.080 21 H 0.096 0.904 22 C -0.206 4.206 23 C -0.142 4.142 24 C -0.062 4.062 25 H 0.099 0.901 26 C -0.143 4.143 27 C -0.144 4.144 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.225 5.688 -8.253 15.049 hybrid contribution 0.106 -0.479 0.716 0.868 sum -11.120 5.209 -7.538 14.408 Atomic orbital electron populations 1.22896 0.79790 1.03550 1.00685 1.87946 1.21298 1.28189 1.95516 1.22872 0.93089 0.84805 1.00974 1.21459 0.93107 0.98682 0.87550 1.47882 1.64964 1.09633 1.09602 1.19548 0.94879 0.77331 0.97794 1.21415 0.95072 0.92606 1.47208 0.95265 1.25640 0.96288 1.01265 0.94318 1.70050 1.16835 1.21260 1.49963 0.85961 0.80539 0.78683 0.79465 1.18321 1.21227 1.16886 1.20882 0.75164 0.87037 0.86171 1.90543 1.54237 1.14786 1.86576 1.21428 0.98402 0.99581 0.91943 0.88951 1.21333 0.92611 1.00242 0.97445 1.20704 0.99698 0.92762 0.94864 0.90383 1.23755 0.96528 0.96514 1.03833 1.23594 0.94911 0.97642 0.98049 1.20551 0.99022 0.93019 0.93607 0.90110 1.21888 0.96177 1.00454 0.95763 1.21921 0.95172 1.00840 0.96497 0.88866 0.92624 0.93813 0.90157 0.93838 0.90318 0.89749 0.94166 0.94359 0.92469 0.91827 0.95020 0.86221 0.86752 0.90726 0.89788 0.90184 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.16 9.99 -148.98 -1.49 -14.65 16 3 C 0.06 1.83 6.26 71.98 0.45 2.28 16 4 C 0.12 4.28 5.80 86.38 0.50 4.78 16 5 N -0.59 -24.93 2.39 -826.13 -1.97 -26.91 16 6 C 0.23 10.27 3.83 85.63 0.33 10.60 16 7 C -0.52 -28.37 8.83 25.60 0.23 -28.14 16 8 H 0.03 1.82 8.05 -2.91 -0.02 1.80 16 9 C 0.02 1.29 5.47 84.65 0.46 1.75 16 10 N -0.94 -56.24 13.96 21.45 0.30 -55.94 16 11 Si 0.93 41.09 27.47 68.60 1.88 42.97 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.25 -10.16 6.54 99.48 0.65 -9.51 16 15 C 0.52 21.41 6.37 87.65 0.56 21.97 16 16 O -0.58 -25.26 14.24 -3.05 -0.04 -25.30 16 17 C -0.09 -3.35 1.77 -11.41 -0.02 -3.37 16 18 H 0.09 3.27 6.25 -2.39 -0.01 3.25 16 19 C -0.08 -3.03 4.32 30.74 0.13 -2.89 16 20 C -0.06 -1.93 3.54 -10.77 -0.04 -1.97 16 21 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 22 C -0.19 -5.87 9.83 25.00 0.25 -5.62 16 23 C -0.12 -3.88 7.74 25.00 0.19 -3.69 16 24 C -0.04 -1.29 2.90 -10.79 -0.03 -1.32 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 C -0.11 -2.50 5.70 31.27 0.18 -2.32 16 27 C -0.11 -2.65 5.80 31.27 0.18 -2.47 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 3.01 8.03 -2.39 -0.02 3.00 16 34 H 0.08 3.12 7.51 -2.38 -0.02 3.11 16 35 H 0.04 1.85 6.63 -2.39 -0.02 1.84 16 36 H 0.04 1.66 5.26 -2.38 -0.01 1.65 16 37 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.03 1.47 7.32 -2.39 -0.02 1.45 16 40 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.17 349.13 4.19 -61.98 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.89 Total: 26.40 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.62 Total: -8.56 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.67 Total: -82.85 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.53 Total: -39.95 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Total: -66.17 4.19 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593450958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.517 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds