Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00025 * 2 1 4 4 C 1.53004 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47311 * 184.99904 * 4 3 2 6 6 C 1.53007 * 109.46698 * 304.99513 * 4 3 2 7 7 O 1.42902 * 109.47305 * 64.99367 * 4 3 2 8 8 C 1.35895 * 116.99577 * 155.06087 * 7 4 3 9 9 C 1.38732 * 120.06131 * 5.47009 * 8 7 4 10 10 C 1.38139 * 119.94709 * 179.97438 * 9 8 7 11 11 C 1.38268 * 120.05728 * 0.27460 * 10 9 8 12 12 C 1.50695 * 119.94776 * 179.72028 * 11 10 9 13 13 N 1.46898 * 109.46780 * 90.00183 * 12 11 10 14 14 C 1.46910 * 111.00005 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47164 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46916 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00337 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86811 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46683 * 59.99956 * 20 18 16 22 22 H 1.48489 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46697 * 300.00346 * 20 18 16 24 24 C 1.38268 * 120.10856 * 359.45167 * 11 10 9 25 25 C 1.38152 * 120.05413 * 0.54701 * 24 11 10 26 26 H 1.09000 * 109.47137 * 60.00615 * 1 2 3 27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.00281 * 1 2 3 29 29 H 1.08993 * 109.47560 * 59.99645 * 3 2 1 30 30 H 1.09004 * 109.46589 * 299.99900 * 3 2 1 31 31 H 1.09004 * 109.47105 * 60.00273 * 6 4 3 32 32 H 1.09001 * 109.46907 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47266 * 300.00006 * 6 4 3 34 34 H 1.08003 * 120.02002 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.97479 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47350 * 210.00232 * 12 11 10 37 37 H 1.09002 * 109.47101 * 330.00374 * 12 11 10 38 38 H 1.00904 * 111.00100 * 303.95278 * 13 12 11 39 39 H 1.09003 * 109.46544 * 300.00051 * 14 13 12 40 40 H 1.08994 * 109.46974 * 60.00094 * 14 13 12 41 41 H 1.08999 * 109.46779 * 300.00146 * 15 14 13 42 42 H 1.09003 * 109.46913 * 60.00149 * 15 14 13 43 43 H 0.97002 * 120.00580 * 179.97438 * 19 18 16 44 44 H 1.07995 * 119.97666 * 180.25518 * 24 11 10 45 45 H 1.08002 * 120.02517 * 179.70736 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9790 0.3195 1.1808 7 8 3.9649 0.5796 -1.2219 8 6 5.2310 0.8521 -1.6336 9 6 6.0811 1.5911 -0.8237 10 6 7.3678 1.8663 -1.2442 11 6 7.8069 1.4108 -2.4737 12 6 9.2090 1.7179 -2.9327 13 7 10.1145 0.6498 -2.4886 14 6 11.4938 0.9163 -2.9186 15 6 12.4053 -0.2148 -2.4381 16 6 13.8200 0.0583 -2.8798 17 1 14.0464 0.9495 -3.4461 18 6 14.8254 -0.8293 -2.5599 19 7 14.5499 -1.9143 -1.8698 20 14 16.5793 -0.4905 -3.1067 21 1 17.0388 0.7967 -2.5262 22 1 17.4639 -1.5882 -2.6405 23 1 16.6289 -0.4109 -4.5888 24 6 6.9635 0.6694 -3.2803 25 6 5.6757 0.3914 -2.8642 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.5359 -0.6724 1.0913 32 1 5.0655 0.2330 1.1801 33 1 3.6514 0.7810 2.1123 34 1 5.7374 1.9501 0.1352 35 1 8.0299 2.4419 -0.6143 36 1 9.2293 1.7824 -4.0206 37 1 9.5311 2.6680 -2.5064 38 1 10.0654 0.5268 -1.4883 39 1 11.5301 0.9755 -4.0064 40 1 11.8314 1.8606 -2.4918 41 1 12.3687 -0.2735 -1.3503 42 1 12.0678 -1.1594 -2.8646 43 1 15.2572 -2.5389 -1.6450 44 1 7.3100 0.3112 -4.2384 45 1 5.0158 -0.1838 -3.4967 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594941965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = -69.200449 kcal Electronic energy + Delta-G solvation = -22356.171779 eV Core-core repulsion = 18952.703584 eV Total energy + Delta-G solvation = -3403.468196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44759 -38.62985 -37.57857 -35.62782 -33.14993 -32.67063 -30.94622 -30.76801 -28.54553 -27.77197 -26.14805 -25.14715 -23.42067 -23.17491 -21.60603 -20.72649 -20.37724 -18.49695 -16.75795 -16.68228 -16.28908 -16.05760 -15.54895 -15.37421 -15.15205 -14.64733 -14.50929 -14.32787 -13.95908 -13.74039 -13.41450 -13.01905 -12.88473 -12.66757 -12.49472 -12.30029 -12.12313 -12.03467 -11.69590 -11.41596 -11.21444 -10.99831 -10.89630 -10.84884 -10.72186 -10.52755 -10.11180 -9.96363 -9.37558 -9.14807 -8.95704 -8.32818 -8.10840 -7.74440 -5.97021 -3.99869 1.38411 1.44443 2.98417 3.31760 3.35119 3.39425 3.41737 3.76971 4.33182 4.46748 4.55362 4.68581 4.79089 4.82954 4.90173 4.93161 4.94319 4.96225 5.13453 5.16054 5.26273 5.28622 5.38579 5.40456 5.43803 5.53696 5.68875 5.77397 5.90753 5.97936 6.09030 6.29165 6.32930 6.39828 6.41969 6.68308 6.75697 6.81213 7.00382 7.37799 7.50583 7.75632 7.85227 7.98552 8.11670 8.46000 9.07300 9.63666 11.14302 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.002066 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.044661 B =13550.916633 C =13804.316147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.066 3.934 4 C 0.085 3.915 5 H 0.086 0.914 6 C -0.177 4.177 7 O -0.303 6.303 8 C 0.123 3.877 9 C -0.212 4.212 10 C -0.075 4.075 11 C -0.110 4.110 12 C 0.099 3.901 13 N -0.686 5.686 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.058 4.058 25 C -0.153 4.153 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.337 0.663 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.261 0.739 44 H 0.131 0.869 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.192 8.945 4.608 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.011 4.011 4 C 0.029 3.971 5 H 0.103 0.897 6 C -0.234 4.234 7 O -0.217 6.217 8 C 0.078 3.922 9 C -0.231 4.231 10 C -0.094 4.094 11 C -0.110 4.110 12 C -0.030 4.030 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.076 4.076 25 C -0.172 4.172 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.149 0.851 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.274 8.092 4.053 29.687 hybrid contribution 1.128 1.195 0.602 1.750 sum -27.146 9.287 4.655 29.066 Atomic orbital electron populations 1.22762 0.81020 1.02992 0.99865 1.87979 1.19546 1.26868 1.95348 1.22621 0.91576 0.85777 1.01101 1.22473 0.93148 0.97248 0.84249 0.89680 1.22280 1.02407 1.01980 0.96755 1.86190 1.27219 1.68516 1.39777 1.18997 0.83969 0.95512 0.93709 1.21168 0.95514 1.05344 1.01047 1.20850 0.94812 0.98375 0.95360 1.19838 0.96220 1.00003 0.94982 1.20830 0.88646 0.93002 1.00513 1.60660 1.08357 1.43614 1.19103 1.22187 0.85732 0.98802 0.99561 1.19067 0.92502 0.93330 0.96338 1.21142 0.92893 1.07105 1.34991 0.92802 1.25008 0.99049 0.95111 0.95212 1.69963 1.32967 1.11425 1.38862 0.86642 0.84466 0.77726 0.79052 1.20316 1.21279 1.20220 1.20887 0.91790 0.95255 0.99695 1.20424 0.96990 1.04723 0.95021 0.94007 0.89455 0.94155 0.91378 0.92307 0.90415 0.91577 0.91325 0.85677 0.86087 0.90632 0.95161 0.84599 0.92282 0.96676 0.96827 0.95602 0.92934 0.85143 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.53 9.79 -40.08 -0.39 -3.92 16 3 C 0.07 0.49 5.81 37.16 0.22 0.70 16 4 C 0.09 0.75 2.63 -26.73 -0.07 0.68 16 5 H 0.09 0.61 6.31 -51.93 -0.33 0.29 16 6 C -0.18 -1.51 8.97 37.16 0.33 -1.18 16 7 O -0.30 -3.65 9.77 -24.26 -0.24 -3.89 16 8 C 0.12 1.54 6.60 -39.22 -0.26 1.29 16 9 C -0.21 -2.46 8.24 -39.44 -0.33 -2.78 16 10 C -0.08 -0.94 9.69 -39.61 -0.38 -1.32 16 11 C -0.11 -1.51 5.39 -104.60 -0.56 -2.07 16 12 C 0.10 1.48 5.81 -4.98 -0.03 1.45 16 13 N -0.69 -12.64 6.49 -115.05 -0.75 -13.39 16 14 C 0.07 1.40 5.62 -3.82 -0.02 1.37 16 15 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.06 -0.76 9.70 -39.60 -0.38 -1.15 16 25 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.78 7.56 -51.93 -0.39 0.38 16 32 H 0.07 0.61 6.91 -51.93 -0.36 0.25 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.13 1.17 5.43 -52.48 -0.28 0.88 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.34 6.10 8.72 -39.29 -0.34 5.76 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -32.54 372.21 -8.96 -41.50 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.58 Total: 1.08 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -1.33 Total: -17.31 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.01 Total: -39.94 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.63 Total: -7.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.54 -8.96 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594941965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.702 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds