Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00025 * 2 1 4 4 C 1.53004 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47311 * 184.99904 * 4 3 2 6 6 C 1.53007 * 109.46698 * 304.99513 * 4 3 2 7 7 O 1.42902 * 109.47305 * 64.99367 * 4 3 2 8 8 C 1.35895 * 116.99577 * 155.06087 * 7 4 3 9 9 C 1.38732 * 120.06131 * 5.47009 * 8 7 4 10 10 C 1.38139 * 119.94709 * 179.97438 * 9 8 7 11 11 C 1.38268 * 120.05728 * 0.27460 * 10 9 8 12 12 C 1.50695 * 119.94776 * 179.72028 * 11 10 9 13 13 N 1.46898 * 109.46780 * 90.00183 * 12 11 10 14 14 C 1.46910 * 111.00005 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47164 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46916 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00337 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86811 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46683 * 59.99956 * 20 18 16 22 22 H 1.48489 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46697 * 300.00346 * 20 18 16 24 24 C 1.38268 * 120.10856 * 359.45167 * 11 10 9 25 25 C 1.38152 * 120.05413 * 0.54701 * 24 11 10 26 26 H 1.09000 * 109.47137 * 60.00615 * 1 2 3 27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.00281 * 1 2 3 29 29 H 1.08993 * 109.47560 * 59.99645 * 3 2 1 30 30 H 1.09004 * 109.46589 * 299.99900 * 3 2 1 31 31 H 1.09004 * 109.47105 * 60.00273 * 6 4 3 32 32 H 1.09001 * 109.46907 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47266 * 300.00006 * 6 4 3 34 34 H 1.08003 * 120.02002 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.97479 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47350 * 210.00232 * 12 11 10 37 37 H 1.09002 * 109.47101 * 330.00374 * 12 11 10 38 38 H 1.00904 * 111.00100 * 303.95278 * 13 12 11 39 39 H 1.09003 * 109.46544 * 300.00051 * 14 13 12 40 40 H 1.08994 * 109.46974 * 60.00094 * 14 13 12 41 41 H 1.08999 * 109.46779 * 300.00146 * 15 14 13 42 42 H 1.09003 * 109.46913 * 60.00149 * 15 14 13 43 43 H 0.97002 * 120.00580 * 179.97438 * 19 18 16 44 44 H 1.07995 * 119.97666 * 180.25518 * 24 11 10 45 45 H 1.08002 * 120.02517 * 179.70736 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9790 0.3195 1.1808 7 8 3.9649 0.5796 -1.2219 8 6 5.2310 0.8521 -1.6336 9 6 6.0811 1.5911 -0.8237 10 6 7.3678 1.8663 -1.2442 11 6 7.8069 1.4108 -2.4737 12 6 9.2090 1.7179 -2.9327 13 7 10.1145 0.6498 -2.4886 14 6 11.4938 0.9163 -2.9186 15 6 12.4053 -0.2148 -2.4381 16 6 13.8200 0.0583 -2.8798 17 1 14.0464 0.9495 -3.4461 18 6 14.8254 -0.8293 -2.5599 19 7 14.5499 -1.9143 -1.8698 20 14 16.5793 -0.4905 -3.1067 21 1 17.0388 0.7967 -2.5262 22 1 17.4639 -1.5882 -2.6405 23 1 16.6289 -0.4109 -4.5888 24 6 6.9635 0.6694 -3.2803 25 6 5.6757 0.3914 -2.8642 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.5359 -0.6724 1.0913 32 1 5.0655 0.2330 1.1801 33 1 3.6514 0.7810 2.1123 34 1 5.7374 1.9501 0.1352 35 1 8.0299 2.4419 -0.6143 36 1 9.2293 1.7824 -4.0206 37 1 9.5311 2.6680 -2.5064 38 1 10.0654 0.5268 -1.4883 39 1 11.5301 0.9755 -4.0064 40 1 11.8314 1.8606 -2.4918 41 1 12.3687 -0.2735 -1.3503 42 1 12.0678 -1.1594 -2.8646 43 1 15.2572 -2.5389 -1.6450 44 1 7.3100 0.3112 -4.2384 45 1 5.0158 -0.1838 -3.4967 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594941965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = -89.851156 kcal Electronic energy + Delta-G solvation = -22357.067261 eV Core-core repulsion = 18952.703584 eV Total energy + Delta-G solvation = -3404.363678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31803 -39.43674 -38.38319 -37.10836 -35.04312 -33.58064 -32.31766 -31.80577 -30.12298 -28.32494 -26.90393 -26.54029 -24.91509 -24.16842 -22.54487 -22.43569 -21.44582 -19.31321 -18.49618 -17.57834 -17.31553 -16.82674 -16.66131 -16.40163 -16.31948 -15.94627 -15.67529 -15.49142 -15.30146 -14.67350 -14.48963 -14.19835 -14.11805 -13.78156 -13.65784 -13.33891 -13.19213 -12.95684 -12.88717 -12.78583 -12.51545 -12.32941 -12.26264 -12.07995 -11.91392 -11.63929 -11.57573 -11.39608 -11.24959 -10.64001 -10.55307 -9.91740 -9.32359 -8.99451 -8.19128 -6.31159 0.42668 0.44695 1.41063 1.44708 1.52635 2.21187 2.41410 2.75265 2.82705 3.13955 3.57371 3.71082 3.89633 3.91487 3.96641 3.98780 4.17434 4.30956 4.36849 4.44431 4.46645 4.53160 4.54827 4.56066 4.61971 4.66643 4.74818 4.79370 4.84986 4.87085 4.90734 5.07908 5.13032 5.27002 5.35158 5.39852 5.45254 5.68073 5.73848 5.78779 5.84888 6.14384 6.19963 6.28317 6.52154 6.53145 6.86232 7.38121 8.92772 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.002066 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.044661 B =13550.916633 C =13804.316147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.064 3.936 4 C 0.076 3.924 5 H 0.105 0.895 6 C -0.173 4.173 7 O -0.319 6.319 8 C 0.120 3.880 9 C -0.209 4.209 10 C -0.078 4.078 11 C -0.126 4.126 12 C 0.104 3.896 13 N -0.694 5.694 14 C 0.084 3.916 15 C 0.031 3.969 16 C -0.545 4.545 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.266 1.266 24 C -0.066 4.066 25 C -0.166 4.166 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.337 0.663 39 H 0.060 0.940 40 H 0.022 0.978 41 H -0.010 1.010 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.647 10.691 4.976 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.012 4.012 4 C 0.020 3.980 5 H 0.122 0.878 6 C -0.230 4.230 7 O -0.234 6.234 8 C 0.074 3.926 9 C -0.228 4.228 10 C -0.096 4.096 11 C -0.127 4.127 12 C -0.024 4.024 13 N -0.325 5.325 14 C -0.045 4.045 15 C -0.007 4.007 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.084 4.084 25 C -0.184 4.184 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.758 9.857 4.418 30.719 hybrid contribution 1.123 0.625 0.543 1.395 sum -27.634 10.482 4.961 29.969 Atomic orbital electron populations 1.22908 0.79565 1.03644 1.00946 1.87935 1.21298 1.28125 1.95604 1.22753 0.90474 0.85412 1.02582 1.22809 0.94347 0.97876 0.82957 0.87785 1.22244 1.01601 1.01238 0.97921 1.86187 1.26839 1.69057 1.41306 1.19156 0.84486 0.95226 0.93712 1.21393 0.94968 1.04644 1.01766 1.21058 0.95418 0.98171 0.94986 1.19782 0.95598 1.01327 0.95944 1.20821 0.88562 0.92266 1.00740 1.60569 1.07137 1.45597 1.19240 1.21802 0.86581 0.96723 0.99388 1.18930 0.93316 0.93820 0.94627 1.21597 0.94084 1.07542 1.35169 0.91947 1.26013 1.04109 0.94719 0.95069 1.70109 1.34604 1.12504 1.40021 0.85448 0.78306 0.77969 0.78984 1.19024 1.20875 1.19133 1.20987 0.92083 0.95356 0.99994 1.20580 0.97053 1.05147 0.95670 0.93462 0.89154 0.92475 0.88534 0.92067 0.92350 0.92497 0.88930 0.83315 0.84648 0.90314 0.93949 0.84534 0.92137 0.95979 0.99124 0.98910 0.92756 0.84832 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.20 9.79 -144.35 -1.41 -8.62 16 3 C 0.06 0.83 5.81 71.98 0.42 1.24 16 4 C 0.08 1.20 2.63 30.60 0.08 1.28 16 5 H 0.10 1.22 6.31 -2.39 -0.02 1.21 16 6 C -0.17 -2.71 8.97 71.98 0.65 -2.07 16 7 O -0.32 -7.43 9.77 -87.73 -0.86 -8.28 16 8 C 0.12 2.89 6.60 22.51 0.15 3.04 16 9 C -0.21 -4.50 8.24 22.36 0.18 -4.32 16 10 C -0.08 -1.82 9.69 22.25 0.22 -1.61 16 11 C -0.13 -3.35 5.39 -19.85 -0.11 -3.46 16 12 C 0.10 3.02 5.81 85.56 0.50 3.51 16 13 N -0.69 -25.47 6.49 -517.92 -3.36 -28.83 16 14 C 0.08 3.58 5.62 86.30 0.49 4.07 16 15 C 0.03 1.67 5.23 29.85 0.16 1.83 16 16 C -0.55 -31.61 9.11 25.60 0.23 -31.37 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 20 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C -0.07 -1.72 9.70 22.26 0.22 -1.50 16 25 C -0.17 -4.18 9.99 22.37 0.22 -3.96 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 1.15 7.56 -2.38 -0.02 1.13 16 32 H 0.06 0.98 6.91 -2.39 -0.02 0.97 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.15 2.39 5.43 -2.91 -0.02 2.38 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 37 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.34 12.24 8.72 -89.69 -0.78 11.46 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 44 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 45 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -70.38 372.21 1.96 -68.41 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.18 Total: 19.64 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 5.11 Total: -31.41 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.08 Total: -86.46 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -2.27 Total: -16.90 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.38 1.96 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594941965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.438 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds