Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99791 * 2 1 4 4 C 1.52993 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47490 * 174.99734 * 4 3 2 6 6 C 1.53005 * 109.47398 * 54.99520 * 4 3 2 7 7 O 1.42897 * 109.47337 * 294.99448 * 4 3 2 8 8 C 1.35900 * 117.00603 * 204.84686 * 7 4 3 9 9 C 1.38731 * 120.06070 * 174.35145 * 8 7 4 10 10 C 1.38145 * 119.94323 * 179.70166 * 9 8 7 11 11 C 1.38266 * 120.05693 * 0.58681 * 10 9 8 12 12 C 1.50700 * 119.94237 * 179.70583 * 11 10 9 13 13 N 1.46906 * 109.46949 * 269.97938 * 12 11 10 14 14 C 1.46894 * 110.99635 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46842 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00407 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99951 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00044 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99840 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47255 * 90.00557 * 20 18 16 22 22 H 1.48507 * 109.46841 * 210.00524 * 20 18 16 23 23 H 1.48496 * 109.47111 * 329.99937 * 20 18 16 24 24 C 1.38266 * 120.10705 * 359.68616 * 11 10 9 25 25 C 1.38138 * 120.05938 * 0.02562 * 24 11 10 26 26 H 1.09000 * 109.47694 * 300.00157 * 1 2 3 27 27 H 1.08992 * 109.47008 * 60.01136 * 1 2 3 28 28 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47403 * 59.99086 * 3 2 1 30 30 H 1.09001 * 109.46559 * 299.99162 * 3 2 1 31 31 H 1.09003 * 109.47127 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46925 * 300.00055 * 6 4 3 33 33 H 1.08997 * 109.46895 * 59.99711 * 6 4 3 34 34 H 1.07996 * 120.02528 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.96660 * 180.27250 * 10 9 8 36 36 H 1.08995 * 109.47441 * 29.97790 * 12 11 10 37 37 H 1.08998 * 109.47089 * 149.98156 * 12 11 10 38 38 H 1.00901 * 110.99556 * 303.95621 * 13 12 11 39 39 H 1.09001 * 109.47300 * 299.99252 * 14 13 12 40 40 H 1.09001 * 109.47949 * 60.00265 * 14 13 12 41 41 H 1.09001 * 109.47362 * 299.99626 * 15 14 13 42 42 H 1.08999 * 109.47467 * 59.99557 * 15 14 13 43 43 H 0.97004 * 119.99721 * 179.97438 * 19 18 16 44 44 H 1.08006 * 119.96792 * 179.97438 * 24 11 10 45 45 H 1.08006 * 120.02783 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9790 0.3194 -1.1806 7 8 3.9648 0.5799 1.2220 8 6 5.2316 0.8509 1.6328 9 6 5.6752 0.3940 2.8653 10 6 6.9653 0.6656 3.2778 11 6 7.8104 1.4025 2.4687 12 6 9.2151 1.7029 2.9241 13 7 9.2277 2.9679 3.6710 14 6 10.5841 3.2939 4.1312 15 6 10.5571 4.6150 4.9025 16 6 11.9485 4.9492 5.3751 17 1 12.7700 4.2860 5.1478 18 6 12.1730 6.1024 6.0970 19 7 11.1728 6.9103 6.3734 20 14 13.8978 6.5170 6.6823 21 1 14.5906 7.3259 5.6475 22 1 13.8185 7.2928 7.9461 23 1 14.6554 5.2619 6.9187 24 6 7.3688 1.8638 1.2423 25 6 6.0815 1.5898 0.8227 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6884 1.8465 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 5.0656 0.2330 -1.1798 32 1 3.5360 -0.6725 -1.0909 33 1 3.6514 0.7807 -2.1122 34 1 5.0138 -0.1773 3.4998 35 1 7.3124 0.3063 4.2353 36 1 9.5685 0.8975 3.5678 37 1 9.8684 1.7872 2.0557 38 1 8.8439 3.7187 3.1169 39 1 10.9474 2.4996 4.7832 40 1 11.2467 3.3894 3.2709 41 1 10.1941 5.4093 4.2502 42 1 9.8945 4.5201 5.7627 43 1 11.3307 7.7214 6.8816 44 1 8.0307 2.4396 0.6123 45 1 5.7370 1.9508 -0.1352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594941966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = -69.466780 kcal Electronic energy + Delta-G solvation = -22345.405588 eV Core-core repulsion = 18941.925843 eV Total energy + Delta-G solvation = -3403.479745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44747 -38.62696 -37.57558 -35.63360 -33.15675 -32.67848 -30.94773 -30.77203 -28.55235 -27.77879 -26.14676 -25.14998 -23.42485 -23.17792 -21.60444 -20.73360 -20.38120 -18.49532 -16.75319 -16.68188 -16.29734 -16.05444 -15.55244 -15.35731 -15.17404 -14.64718 -14.50264 -14.32073 -14.01385 -13.71207 -13.42410 -13.03935 -12.86842 -12.67566 -12.50815 -12.33195 -12.16660 -11.97833 -11.72110 -11.42686 -11.18371 -11.00350 -10.90955 -10.89436 -10.72111 -10.50858 -10.10282 -9.97518 -9.38391 -9.14304 -8.95773 -8.33951 -8.11104 -7.74982 -5.98175 -4.00787 1.38404 1.44419 2.98497 3.32428 3.33005 3.39140 3.42659 3.77306 4.33364 4.46026 4.55056 4.69917 4.79547 4.83593 4.90320 4.93303 4.94954 4.97572 5.14731 5.15733 5.24677 5.28508 5.37662 5.39330 5.43709 5.49705 5.68425 5.77131 5.90831 5.92594 6.08899 6.29063 6.32670 6.39573 6.41493 6.68575 6.75631 6.81122 6.99713 7.37789 7.49882 7.74876 7.84476 7.97800 8.10697 8.45198 9.06593 9.62831 11.13217 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036089 B = 0.002061 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.677370 B =13584.850562 C =13817.168602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.085 3.915 5 H 0.087 0.913 6 C -0.176 4.176 7 O -0.303 6.303 8 C 0.123 3.877 9 C -0.153 4.153 10 C -0.058 4.058 11 C -0.109 4.109 12 C 0.099 3.901 13 N -0.686 5.686 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.075 4.075 25 C -0.212 4.212 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.336 0.664 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.549 -13.649 -16.137 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.011 4.011 4 C 0.028 3.972 5 H 0.104 0.896 6 C -0.233 4.233 7 O -0.217 6.217 8 C 0.078 3.922 9 C -0.171 4.171 10 C -0.077 4.077 11 C -0.110 4.110 12 C -0.030 4.030 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.094 4.094 25 C -0.231 4.231 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.796 -14.068 -15.356 28.733 hybrid contribution 1.181 1.060 -0.683 1.727 sum -18.616 -13.009 -16.039 27.803 Atomic orbital electron populations 1.22759 0.81002 1.02932 0.99953 1.87960 1.19572 1.26955 1.95375 1.22625 0.91523 0.85725 1.01254 1.22475 0.93224 0.97324 0.84136 0.89560 1.22271 1.02186 1.01945 0.96893 1.86187 1.27167 1.68539 1.39818 1.18997 0.83890 0.95588 0.93731 1.20421 0.96889 1.04974 0.94840 1.20887 0.91974 0.95977 0.98820 1.19832 0.96944 0.99729 0.94507 1.20832 0.91376 0.94549 0.96248 1.60659 1.24512 1.03820 1.42730 1.22185 0.85891 1.00655 0.97563 1.19072 0.97028 0.89794 0.95368 1.21183 0.94032 1.06505 1.34319 0.92740 1.25013 0.96921 0.96368 0.96123 1.69977 1.30694 1.12738 1.39825 0.86580 0.84727 0.78410 0.78184 1.20732 1.21195 1.19879 1.20850 0.94958 0.97852 0.95757 1.21170 0.95458 1.05227 1.01201 0.93933 0.94143 0.89509 0.92148 0.91343 0.91743 0.90506 0.91315 0.85419 0.85146 0.90620 0.95141 0.84630 0.92267 0.96666 0.96838 0.95602 0.93003 0.86087 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.51 9.79 -40.08 -0.39 -3.91 16 3 C 0.07 0.50 5.81 37.15 0.22 0.72 16 4 C 0.08 0.75 2.63 -26.73 -0.07 0.68 16 5 H 0.09 0.66 6.31 -51.93 -0.33 0.33 16 6 C -0.18 -1.40 8.97 37.16 0.33 -1.06 16 7 O -0.30 -3.65 9.77 -24.27 -0.24 -3.89 16 8 C 0.12 1.54 6.60 -39.22 -0.26 1.28 16 9 C -0.15 -1.94 9.99 -39.43 -0.39 -2.34 16 10 C -0.06 -0.77 9.69 -39.61 -0.38 -1.15 16 11 C -0.11 -1.50 5.39 -104.60 -0.56 -2.07 16 12 C 0.10 1.48 5.81 -4.97 -0.03 1.45 16 13 N -0.69 -12.57 6.49 -115.06 -0.75 -13.32 16 14 C 0.07 1.39 5.62 -3.83 -0.02 1.37 16 15 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 16 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.08 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.21 -2.45 8.24 -39.44 -0.32 -2.78 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 6.90 -51.93 -0.36 0.17 16 32 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.34 6.04 8.72 -39.29 -0.34 5.70 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.13 1.17 5.43 -52.48 -0.28 0.88 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -32.39 372.20 -8.96 -41.35 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.58 Total: 0.95 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.33 Total: -17.15 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.01 Total: -39.78 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.63 Total: -7.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.39 -8.96 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594941966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.116 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds