Wall clock time and date at job start Tue Mar 31 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99791 * 2 1 4 4 C 1.52993 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47490 * 174.99734 * 4 3 2 6 6 C 1.53005 * 109.47398 * 54.99520 * 4 3 2 7 7 O 1.42897 * 109.47337 * 294.99448 * 4 3 2 8 8 C 1.35900 * 117.00603 * 204.84686 * 7 4 3 9 9 C 1.38731 * 120.06070 * 174.35145 * 8 7 4 10 10 C 1.38145 * 119.94323 * 179.70166 * 9 8 7 11 11 C 1.38266 * 120.05693 * 0.58681 * 10 9 8 12 12 C 1.50700 * 119.94237 * 179.70583 * 11 10 9 13 13 N 1.46906 * 109.46949 * 269.97938 * 12 11 10 14 14 C 1.46894 * 110.99635 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46842 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00407 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99951 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00044 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99840 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47255 * 90.00557 * 20 18 16 22 22 H 1.48507 * 109.46841 * 210.00524 * 20 18 16 23 23 H 1.48496 * 109.47111 * 329.99937 * 20 18 16 24 24 C 1.38266 * 120.10705 * 359.68616 * 11 10 9 25 25 C 1.38138 * 120.05938 * 0.02562 * 24 11 10 26 26 H 1.09000 * 109.47694 * 300.00157 * 1 2 3 27 27 H 1.08992 * 109.47008 * 60.01136 * 1 2 3 28 28 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47403 * 59.99086 * 3 2 1 30 30 H 1.09001 * 109.46559 * 299.99162 * 3 2 1 31 31 H 1.09003 * 109.47127 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46925 * 300.00055 * 6 4 3 33 33 H 1.08997 * 109.46895 * 59.99711 * 6 4 3 34 34 H 1.07996 * 120.02528 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.96660 * 180.27250 * 10 9 8 36 36 H 1.08995 * 109.47441 * 29.97790 * 12 11 10 37 37 H 1.08998 * 109.47089 * 149.98156 * 12 11 10 38 38 H 1.00901 * 110.99556 * 303.95621 * 13 12 11 39 39 H 1.09001 * 109.47300 * 299.99252 * 14 13 12 40 40 H 1.09001 * 109.47949 * 60.00265 * 14 13 12 41 41 H 1.09001 * 109.47362 * 299.99626 * 15 14 13 42 42 H 1.08999 * 109.47467 * 59.99557 * 15 14 13 43 43 H 0.97004 * 119.99721 * 179.97438 * 19 18 16 44 44 H 1.08006 * 119.96792 * 179.97438 * 24 11 10 45 45 H 1.08006 * 120.02783 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9790 0.3194 -1.1806 7 8 3.9648 0.5799 1.2220 8 6 5.2316 0.8509 1.6328 9 6 5.6752 0.3940 2.8653 10 6 6.9653 0.6656 3.2778 11 6 7.8104 1.4025 2.4687 12 6 9.2151 1.7029 2.9241 13 7 9.2277 2.9679 3.6710 14 6 10.5841 3.2939 4.1312 15 6 10.5571 4.6150 4.9025 16 6 11.9485 4.9492 5.3751 17 1 12.7700 4.2860 5.1478 18 6 12.1730 6.1024 6.0970 19 7 11.1728 6.9103 6.3734 20 14 13.8978 6.5170 6.6823 21 1 14.5906 7.3259 5.6475 22 1 13.8185 7.2928 7.9461 23 1 14.6554 5.2619 6.9187 24 6 7.3688 1.8638 1.2423 25 6 6.0815 1.5898 0.8227 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6884 1.8465 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 5.0656 0.2330 -1.1798 32 1 3.5360 -0.6725 -1.0909 33 1 3.6514 0.7807 -2.1122 34 1 5.0138 -0.1773 3.4998 35 1 7.3124 0.3063 4.2353 36 1 9.5685 0.8975 3.5678 37 1 9.8684 1.7872 2.0557 38 1 8.8439 3.7187 3.1169 39 1 10.9474 2.4996 4.7832 40 1 11.2467 3.3894 3.2709 41 1 10.1941 5.4093 4.2502 42 1 9.8945 4.5201 5.7627 43 1 11.3307 7.7214 6.8816 44 1 8.0307 2.4396 0.6123 45 1 5.7370 1.9508 -0.1352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594941966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:39 Heat of formation + Delta-G solvation = -89.911247 kcal Electronic energy + Delta-G solvation = -22346.292126 eV Core-core repulsion = 18941.925843 eV Total energy + Delta-G solvation = -3404.366283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31847 -39.43867 -38.38461 -37.10946 -35.04401 -33.58017 -32.31766 -31.80624 -30.12313 -28.32791 -26.90480 -26.54094 -24.91611 -24.16767 -22.54380 -22.43820 -21.44803 -19.31421 -18.50053 -17.57988 -17.32045 -16.82667 -16.67478 -16.39530 -16.29735 -15.98471 -15.65740 -15.47740 -15.32249 -14.66979 -14.49304 -14.20041 -14.11981 -13.77397 -13.65223 -13.37900 -13.14690 -12.98862 -12.88190 -12.80104 -12.49197 -12.34407 -12.25403 -12.06333 -11.91490 -11.67201 -11.57658 -11.39029 -11.23032 -10.64795 -10.55912 -9.91791 -9.32546 -8.99408 -8.19564 -6.31263 0.42677 0.44679 1.41050 1.42859 1.54072 2.20726 2.41220 2.75821 2.81650 3.13713 3.57298 3.70675 3.89648 3.91725 3.96017 3.98907 4.17998 4.30810 4.36220 4.44550 4.46623 4.53093 4.54678 4.56269 4.61966 4.66655 4.74867 4.79590 4.85651 4.86698 4.90939 5.07951 5.13001 5.26920 5.35107 5.39864 5.45427 5.68162 5.73793 5.78768 5.84753 6.14327 6.18476 6.28158 6.51951 6.53557 6.86268 7.38003 8.92551 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036089 B = 0.002061 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.677370 B =13584.850562 C =13817.168602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.063 3.937 4 C 0.075 3.925 5 H 0.101 0.899 6 C -0.170 4.170 7 O -0.319 6.319 8 C 0.119 3.881 9 C -0.166 4.166 10 C -0.066 4.066 11 C -0.126 4.126 12 C 0.104 3.896 13 N -0.694 5.694 14 C 0.083 3.917 15 C 0.031 3.969 16 C -0.544 4.544 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.078 4.078 25 C -0.209 4.209 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.338 0.662 39 H 0.060 0.940 40 H 0.022 0.978 41 H -0.009 1.009 42 H -0.007 1.007 43 H 0.264 0.736 44 H 0.136 0.864 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.275 -13.831 -17.505 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.013 4.013 4 C 0.019 3.981 5 H 0.118 0.882 6 C -0.227 4.227 7 O -0.234 6.234 8 C 0.074 3.926 9 C -0.184 4.184 10 C -0.084 4.084 11 C -0.126 4.126 12 C -0.024 4.024 13 N -0.325 5.325 14 C -0.045 4.045 15 C -0.007 4.007 16 C -0.583 4.583 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.096 4.096 25 C -0.228 4.228 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.155 0.845 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.154 0.846 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.537 -14.271 -16.741 29.422 hybrid contribution 0.949 1.089 -0.311 1.478 sum -18.588 -13.182 -17.052 28.461 Atomic orbital electron populations 1.22911 0.79588 1.03708 1.00884 1.87919 1.21257 1.27968 1.95596 1.22742 0.90657 0.85454 1.02453 1.22805 0.94220 0.97914 0.83164 0.88174 1.22224 1.01744 1.01157 0.97592 1.86182 1.26809 1.69031 1.41365 1.19155 0.84386 0.95316 0.93741 1.20577 0.96944 1.05424 0.95479 1.20987 0.92237 0.96152 0.99059 1.19777 0.96408 1.01006 0.95433 1.20818 0.92675 0.92620 0.96287 1.60565 1.22525 1.05258 1.44105 1.21802 0.87800 0.97743 0.97182 1.18931 0.95523 0.91941 0.94285 1.21627 0.95090 1.06972 1.34606 0.91997 1.26007 1.01599 0.96179 0.96127 1.70117 1.33266 1.13293 1.40544 0.85396 0.79066 0.78523 0.77728 1.19673 1.20778 1.18686 1.21057 0.95565 0.97568 0.95453 1.21396 0.94899 1.04518 1.01942 0.93685 0.92478 0.88935 0.92444 0.88559 0.92151 0.92118 0.89021 0.84774 0.84824 0.90362 0.93991 0.84498 0.92180 0.95999 0.99074 0.98859 0.92760 0.84643 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.12 9.79 -144.34 -1.41 -8.53 16 3 C 0.06 0.86 5.81 71.98 0.42 1.28 16 4 C 0.07 1.19 2.63 30.59 0.08 1.27 16 5 H 0.10 1.30 6.31 -2.39 -0.02 1.28 16 6 C -0.17 -2.41 8.97 71.98 0.65 -1.77 16 7 O -0.32 -7.44 9.77 -87.79 -0.86 -8.30 16 8 C 0.12 2.89 6.60 22.51 0.15 3.04 16 9 C -0.17 -4.18 9.99 22.37 0.22 -3.96 16 10 C -0.07 -1.72 9.69 22.25 0.22 -1.50 16 11 C -0.13 -3.34 5.39 -19.85 -0.11 -3.45 16 12 C 0.10 3.01 5.81 85.56 0.50 3.51 16 13 N -0.69 -25.25 6.49 -517.94 -3.36 -28.61 16 14 C 0.08 3.55 5.62 86.30 0.49 4.04 16 15 C 0.03 1.67 5.23 29.85 0.16 1.82 16 16 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 19 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 20 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 C -0.08 -1.82 9.69 22.25 0.22 -1.61 16 25 C -0.21 -4.50 8.24 22.36 0.18 -4.31 16 26 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.90 6.90 -2.39 -0.02 0.88 16 32 H 0.06 1.07 7.56 -2.39 -0.02 1.05 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.08 2.20 8.08 -2.39 -0.02 2.19 16 37 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.34 12.10 8.72 -89.69 -0.78 11.32 16 39 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.15 2.39 5.43 -2.91 -0.02 2.38 16 Total: -1.00 -69.73 372.20 1.96 -67.77 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.18 Total: 19.32 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 5.11 Total: -30.94 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.08 Total: -85.92 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -2.27 Total: -16.83 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -69.73 1.96 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594941966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.142 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds