Wall clock time and date at job start Tue Mar 31 2020 07:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47000 * 270.00127 * 3 2 1 5 5 H 1.48497 * 109.47481 * 30.00165 * 3 2 1 6 6 H 1.48503 * 109.47045 * 150.00041 * 3 2 1 7 7 C 1.38807 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00066 * 176.33680 * 7 2 1 9 9 N 1.36934 * 120.00284 * 356.34142 * 7 2 1 10 10 C 1.46932 * 120.63243 * 215.67519 * 9 7 2 11 11 C 1.53197 * 108.77456 * 233.58692 * 10 9 7 12 12 C 1.53036 * 109.30996 * 305.36066 * 11 10 9 13 13 N 1.46498 * 109.45992 * 181.38503 * 12 11 10 14 14 C 1.34776 * 120.00070 * 154.97539 * 13 12 11 15 15 O 1.21587 * 119.99948 * 5.54348 * 14 13 12 16 16 N 1.34776 * 119.99923 * 185.55402 * 14 13 12 17 17 C 1.45318 * 118.83298 * 175.67632 * 16 14 13 18 18 C 1.51700 * 112.00786 * 235.91378 * 17 16 14 19 19 C 1.51280 * 112.95246 * 318.23536 * 18 17 16 20 20 H 1.08996 * 114.33882 * 163.72676 * 19 18 17 21 21 C 1.52121 * 120.85021 * 308.62447 * 19 18 17 22 22 C 1.52219 * 120.66136 * 20.67236 * 19 18 17 23 23 H 1.09000 * 117.39542 * 142.28200 * 22 19 18 24 24 C 1.45542 * 118.83273 * 355.68941 * 16 14 13 25 25 C 1.53048 * 109.52686 * 61.37680 * 12 11 10 26 26 C 1.46926 * 120.62984 * 35.64956 * 9 7 2 27 27 H 0.97003 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58754 * 113.79682 * 10 9 7 29 29 H 1.09003 * 109.58436 * 353.37049 * 10 9 7 30 30 H 1.08998 * 109.49306 * 185.41071 * 11 10 9 31 31 H 1.09002 * 109.52265 * 65.32819 * 11 10 9 32 32 H 1.08998 * 109.46195 * 301.36040 * 12 11 10 33 33 H 0.97005 * 120.00295 * 334.97620 * 13 12 11 34 34 H 1.09004 * 108.97650 * 115.25660 * 17 16 14 35 35 H 1.09001 * 108.96951 * 356.56276 * 17 16 14 36 36 H 1.08994 * 108.78838 * 197.33957 * 18 17 16 37 37 H 1.08997 * 108.70056 * 79.06271 * 18 17 16 38 38 H 1.09005 * 117.54216 * 217.65063 * 21 19 18 39 39 H 1.08996 * 117.54044 * 2.84773 * 21 19 18 40 40 H 1.08998 * 109.21685 * 260.79768 * 24 16 14 41 41 H 1.09004 * 109.20674 * 20.12123 * 24 16 14 42 42 H 1.09002 * 109.49867 * 58.57523 * 25 12 11 43 43 H 1.09004 * 109.49594 * 178.67692 * 25 12 11 44 44 H 1.08997 * 109.58565 * 246.19904 * 26 9 7 45 45 H 1.08993 * 109.58764 * 6.62699 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0886 -1.2031 -0.0592 9 7 1.3277 -2.3868 0.0767 10 6 1.8838 -3.5246 0.8217 11 6 1.9152 -4.7487 -0.0990 12 6 0.5144 -4.9923 -0.6650 13 7 0.5335 -6.1818 -1.5199 14 6 -0.5979 -6.8864 -1.7197 15 8 -1.6537 -6.4801 -1.2741 16 7 -0.5590 -8.0414 -2.4132 17 6 -1.7747 -8.8285 -2.5325 18 6 -1.5842 -10.2480 -2.0324 19 6 -0.2643 -10.8516 -2.4589 20 1 0.0249 -11.7409 -1.8989 21 6 0.1684 -10.8302 -3.9172 22 6 0.8972 -9.9613 -2.8779 23 1 1.8991 -10.2713 -2.5812 24 6 0.6993 -8.4562 -3.0157 25 6 0.0776 -3.7790 -1.4894 26 6 0.0250 -2.5441 -0.5844 27 1 -0.4850 0.8401 0.0004 28 1 1.2573 -3.7353 1.6884 29 1 2.8961 -3.2875 1.1489 30 1 2.2354 -5.6225 0.4685 31 1 2.6126 -4.5709 -0.9177 32 1 -0.1870 -5.1457 0.1551 33 1 1.3605 -6.4624 -1.9422 34 1 -2.0758 -8.8590 -3.5797 35 1 -2.5642 -8.3512 -1.9521 36 1 -2.3942 -10.8675 -2.4174 37 1 -1.6329 -10.2444 -0.9436 38 1 0.6937 -11.7052 -4.3000 39 1 -0.4837 -10.3240 -4.6289 40 1 0.6952 -8.1916 -4.0730 41 1 1.5215 -7.9395 -2.5205 42 1 0.7924 -3.6100 -2.2948 43 1 -0.9104 -3.9627 -1.9116 44 1 -0.7530 -2.6748 0.1677 45 1 -0.1891 -1.6600 -1.1848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595498918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:52 Heat of formation + Delta-G solvation = 23.194851 kcal Electronic energy + Delta-G solvation = -24279.506568 eV Core-core repulsion = 20912.337684 eV Total energy + Delta-G solvation = -3367.168884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75521 -38.80714 -37.26390 -34.48687 -34.45949 -32.46238 -31.48534 -29.88506 -29.27096 -26.84748 -25.29112 -24.26562 -22.13960 -21.97186 -21.78639 -20.46507 -19.51823 -18.48918 -17.86596 -16.73744 -16.40738 -15.90461 -15.58313 -14.92511 -14.60100 -14.36707 -14.15090 -13.78232 -13.68698 -13.41393 -13.05320 -12.90009 -12.67368 -12.44365 -12.22353 -12.03344 -11.69348 -11.44787 -11.16366 -10.90692 -10.86423 -10.76693 -10.38142 -10.27760 -10.17628 -10.11945 -10.03422 -9.86028 -9.75184 -9.53291 -8.78228 -8.47351 -8.31029 -6.52120 -5.74512 -3.28621 2.73077 3.33965 3.38893 3.40276 3.45459 3.47096 4.02011 4.32651 4.38412 4.50359 4.53118 4.71143 4.83577 5.02451 5.15857 5.35904 5.38205 5.39367 5.44540 5.50758 5.53957 5.63333 5.71822 5.74187 5.80132 5.84637 5.90473 5.91707 6.17087 6.29936 6.43527 6.53518 6.56806 6.70262 6.72495 6.86457 6.97643 7.01999 7.14302 7.52598 7.81021 7.88893 8.11892 8.56904 8.79584 9.28217 9.86916 10.47165 11.31393 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003104 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.316784 B = 9019.759251 C = 9283.183231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.595 5.595 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.585 6.585 16 N -0.626 5.626 17 C 0.128 3.872 18 C -0.104 4.104 19 C -0.129 4.129 20 H 0.099 0.901 21 C -0.176 4.176 22 C -0.168 4.168 23 H 0.113 0.887 24 C 0.143 3.857 25 C -0.148 4.148 26 C 0.170 3.830 27 H 0.255 0.745 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.389 0.611 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -22.060 -6.940 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.395 5.395 14 C 0.403 3.597 15 O -0.463 6.463 16 N -0.363 5.363 17 C 0.004 3.996 18 C -0.142 4.142 19 C -0.148 4.148 20 H 0.117 0.883 21 C -0.214 4.214 22 C -0.187 4.187 23 H 0.131 0.869 24 C 0.019 3.981 25 C -0.188 4.188 26 C 0.044 3.956 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.225 0.775 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.570 -21.588 -6.580 22.576 hybrid contribution 0.984 0.516 -0.312 1.154 sum 1.554 -21.072 -6.892 22.225 Atomic orbital electron populations 1.69909 1.05350 1.25461 1.53901 1.25347 0.95536 0.98304 0.99799 0.86289 0.79133 0.83672 0.77631 1.21451 1.21554 1.20417 1.19131 0.90621 0.83172 1.45630 0.91913 1.44051 1.20664 1.09730 1.57312 1.20856 0.97723 0.87007 0.92199 1.22351 0.95408 0.99633 1.00486 1.20924 0.97745 0.82766 0.92154 1.45752 1.09769 1.30286 1.53718 1.15997 0.84678 0.80155 0.78896 1.90910 1.29088 1.70399 1.55889 1.46439 1.10526 1.22351 1.57018 1.20697 0.87126 0.90512 1.01286 1.20776 0.95774 0.95874 1.01823 1.21502 0.95468 1.00219 0.97592 0.88307 1.23126 1.03725 1.02337 0.92164 1.22496 0.97849 0.92891 1.05446 0.86940 1.20656 0.86212 0.92927 0.98255 1.22615 0.99903 0.96762 0.99530 1.20941 0.86366 0.94645 0.93620 0.93478 0.96196 0.92399 0.92819 0.92042 0.90315 0.77514 0.92589 0.88169 0.90315 0.91116 0.88687 0.88590 0.91619 0.90188 0.93047 0.92807 0.96445 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 10.66 55.49 0.59 -25.86 16 2 C 0.01 0.25 5.31 -17.43 -0.09 0.16 16 3 Si 0.90 21.72 29.56 -169.99 -5.02 16.70 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -7.04 9.55 -15.06 -0.14 -7.19 16 8 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 9 N -0.59 -15.11 3.00 -172.32 -0.52 -15.63 16 10 C 0.15 3.13 6.52 -3.70 -0.02 3.11 16 11 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 12 C 0.17 3.07 2.37 -67.89 -0.16 2.91 16 13 N -0.74 -11.26 4.93 -58.63 -0.29 -11.54 16 14 C 0.70 11.46 8.18 -86.92 -0.71 10.75 16 15 O -0.59 -12.01 15.18 5.29 0.08 -11.93 16 16 N -0.63 -7.75 3.01 -182.27 -0.55 -8.30 16 17 C 0.13 1.40 6.05 -5.34 -0.03 1.37 16 18 C -0.10 -0.89 6.09 -28.26 -0.17 -1.06 16 19 C -0.13 -1.00 5.92 -92.33 -0.55 -1.55 16 20 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.18 -1.21 9.77 -26.75 -0.26 -1.47 16 22 C -0.17 -1.30 6.35 -90.88 -0.58 -1.88 16 23 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 24 C 0.14 1.33 6.14 -4.85 -0.03 1.30 16 25 C -0.15 -3.10 5.65 -26.60 -0.15 -3.25 16 26 C 0.17 4.28 5.26 -3.71 -0.02 4.26 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.62 7.66 -51.93 -0.40 1.23 16 33 H 0.39 4.79 6.03 -40.82 -0.25 4.54 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.31 6.74 -51.93 -0.35 0.96 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.08 0.68 5.65 -51.93 -0.29 0.39 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.16 8.06 -51.93 -0.42 0.75 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 2.80 5.96 -51.93 -0.31 2.49 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -32.12 346.33 -11.02 -43.15 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.47 Total: 3.27 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -3.07 Total: 4.94 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.76 Total: -61.34 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.12 -11.02 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.340 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds