Wall clock time and date at job start Tue Mar 31 2020 07:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47000 * 270.00127 * 3 2 1 5 5 H 1.48497 * 109.47481 * 30.00165 * 3 2 1 6 6 H 1.48503 * 109.47045 * 150.00041 * 3 2 1 7 7 C 1.38807 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00066 * 176.33680 * 7 2 1 9 9 N 1.36934 * 120.00284 * 356.34142 * 7 2 1 10 10 C 1.46932 * 120.63243 * 215.67519 * 9 7 2 11 11 C 1.53197 * 108.77456 * 233.58692 * 10 9 7 12 12 C 1.53036 * 109.30996 * 305.36066 * 11 10 9 13 13 N 1.46498 * 109.45992 * 181.38503 * 12 11 10 14 14 C 1.34776 * 120.00070 * 154.97539 * 13 12 11 15 15 O 1.21587 * 119.99948 * 5.54348 * 14 13 12 16 16 N 1.34776 * 119.99923 * 185.55402 * 14 13 12 17 17 C 1.45318 * 118.83298 * 175.67632 * 16 14 13 18 18 C 1.51700 * 112.00786 * 235.91378 * 17 16 14 19 19 C 1.51280 * 112.95246 * 318.23536 * 18 17 16 20 20 H 1.08996 * 114.33882 * 163.72676 * 19 18 17 21 21 C 1.52121 * 120.85021 * 308.62447 * 19 18 17 22 22 C 1.52219 * 120.66136 * 20.67236 * 19 18 17 23 23 H 1.09000 * 117.39542 * 142.28200 * 22 19 18 24 24 C 1.45542 * 118.83273 * 355.68941 * 16 14 13 25 25 C 1.53048 * 109.52686 * 61.37680 * 12 11 10 26 26 C 1.46926 * 120.62984 * 35.64956 * 9 7 2 27 27 H 0.97003 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58754 * 113.79682 * 10 9 7 29 29 H 1.09003 * 109.58436 * 353.37049 * 10 9 7 30 30 H 1.08998 * 109.49306 * 185.41071 * 11 10 9 31 31 H 1.09002 * 109.52265 * 65.32819 * 11 10 9 32 32 H 1.08998 * 109.46195 * 301.36040 * 12 11 10 33 33 H 0.97005 * 120.00295 * 334.97620 * 13 12 11 34 34 H 1.09004 * 108.97650 * 115.25660 * 17 16 14 35 35 H 1.09001 * 108.96951 * 356.56276 * 17 16 14 36 36 H 1.08994 * 108.78838 * 197.33957 * 18 17 16 37 37 H 1.08997 * 108.70056 * 79.06271 * 18 17 16 38 38 H 1.09005 * 117.54216 * 217.65063 * 21 19 18 39 39 H 1.08996 * 117.54044 * 2.84773 * 21 19 18 40 40 H 1.08998 * 109.21685 * 260.79768 * 24 16 14 41 41 H 1.09004 * 109.20674 * 20.12123 * 24 16 14 42 42 H 1.09002 * 109.49867 * 58.57523 * 25 12 11 43 43 H 1.09004 * 109.49594 * 178.67692 * 25 12 11 44 44 H 1.08997 * 109.58565 * 246.19904 * 26 9 7 45 45 H 1.08993 * 109.58764 * 6.62699 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0886 -1.2031 -0.0592 9 7 1.3277 -2.3868 0.0767 10 6 1.8838 -3.5246 0.8217 11 6 1.9152 -4.7487 -0.0990 12 6 0.5144 -4.9923 -0.6650 13 7 0.5335 -6.1818 -1.5199 14 6 -0.5979 -6.8864 -1.7197 15 8 -1.6537 -6.4801 -1.2741 16 7 -0.5590 -8.0414 -2.4132 17 6 -1.7747 -8.8285 -2.5325 18 6 -1.5842 -10.2480 -2.0324 19 6 -0.2643 -10.8516 -2.4589 20 1 0.0249 -11.7409 -1.8989 21 6 0.1684 -10.8302 -3.9172 22 6 0.8972 -9.9613 -2.8779 23 1 1.8991 -10.2713 -2.5812 24 6 0.6993 -8.4562 -3.0157 25 6 0.0776 -3.7790 -1.4894 26 6 0.0250 -2.5441 -0.5844 27 1 -0.4850 0.8401 0.0004 28 1 1.2573 -3.7353 1.6884 29 1 2.8961 -3.2875 1.1489 30 1 2.2354 -5.6225 0.4685 31 1 2.6126 -4.5709 -0.9177 32 1 -0.1870 -5.1457 0.1551 33 1 1.3605 -6.4624 -1.9422 34 1 -2.0758 -8.8590 -3.5797 35 1 -2.5642 -8.3512 -1.9521 36 1 -2.3942 -10.8675 -2.4174 37 1 -1.6329 -10.2444 -0.9436 38 1 0.6937 -11.7052 -4.3000 39 1 -0.4837 -10.3240 -4.6289 40 1 0.6952 -8.1916 -4.0730 41 1 1.5215 -7.9395 -2.5205 42 1 0.7924 -3.6100 -2.2948 43 1 -0.9104 -3.9627 -1.9116 44 1 -0.7530 -2.6748 0.1677 45 1 -0.1891 -1.6600 -1.1848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595498918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:51 Heat of formation + Delta-G solvation = 3.700504 kcal Electronic energy + Delta-G solvation = -24280.351907 eV Core-core repulsion = 20912.337684 eV Total energy + Delta-G solvation = -3368.014222 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82008 -39.88990 -38.79937 -36.09495 -35.50348 -34.00341 -32.66669 -31.63467 -30.95258 -27.72375 -26.93174 -25.40334 -23.86111 -23.55871 -22.43532 -21.62351 -21.14354 -19.72923 -18.85464 -18.52020 -17.57928 -16.92370 -16.61898 -16.57553 -15.95465 -15.56199 -15.29799 -15.18843 -15.06931 -14.85425 -14.73942 -14.13726 -14.05415 -13.72778 -13.34532 -13.18928 -12.86525 -12.77056 -12.69140 -12.55649 -12.31872 -12.07868 -12.00085 -11.91659 -11.85599 -11.56570 -11.44830 -11.19123 -10.86670 -10.71836 -10.54716 -10.11118 -9.48009 -8.57658 -7.84982 -5.43017 1.48131 1.49540 1.59128 1.62830 2.09988 2.51067 2.71562 3.02269 3.31357 3.69751 3.71490 3.74801 3.89241 3.89982 4.04628 4.12149 4.17633 4.25788 4.34582 4.46537 4.50317 4.68110 4.70437 4.78674 4.82158 4.84619 4.91630 4.98038 5.04820 5.09054 5.10338 5.13297 5.17521 5.20945 5.30837 5.34162 5.50928 5.59536 5.64996 5.66020 5.78916 5.92177 6.46493 6.96461 7.17679 7.55390 7.84534 8.40512 9.19482 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003104 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.316784 B = 9019.759251 C = 9283.183231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.049 4.049 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.143 3.857 11 C -0.121 4.121 12 C 0.180 3.820 13 N -0.726 5.726 14 C 0.695 3.305 15 O -0.635 6.635 16 N -0.618 5.618 17 C 0.123 3.877 18 C -0.098 4.098 19 C -0.138 4.138 20 H 0.111 0.889 21 C -0.164 4.164 22 C -0.173 4.173 23 H 0.129 0.871 24 C 0.135 3.865 25 C -0.131 4.131 26 C 0.181 3.819 27 H 0.250 0.750 28 H 0.012 0.988 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.039 0.961 44 H -0.015 1.015 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -24.350 -7.931 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.395 4.395 8 H 0.090 0.910 9 N -0.336 5.336 10 C 0.017 3.983 11 C -0.160 4.160 12 C 0.075 3.925 13 N -0.383 5.383 14 C 0.396 3.604 15 O -0.516 6.516 16 N -0.354 5.354 17 C -0.001 4.001 18 C -0.136 4.136 19 C -0.157 4.157 20 H 0.129 0.871 21 C -0.201 4.201 22 C -0.192 4.192 23 H 0.147 0.853 24 C 0.013 3.987 25 C -0.171 4.171 26 C 0.054 3.946 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.247 0.753 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.003 0.997 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.210 -23.956 -7.603 25.338 hybrid contribution 0.143 1.164 -0.023 1.173 sum 3.352 -22.792 -7.626 24.267 Atomic orbital electron populations 1.70126 1.06967 1.25761 1.55483 1.26162 0.96296 1.01862 1.00145 0.85205 0.78100 0.79130 0.77585 1.21040 1.22277 1.18923 1.19532 0.91207 0.84091 1.44651 0.90971 1.44283 1.20357 1.10674 1.58268 1.21048 0.97757 0.87000 0.92485 1.22147 0.94464 0.99046 1.00379 1.20530 0.98040 0.82653 0.91271 1.45354 1.10462 1.29107 1.53365 1.16217 0.84031 0.81109 0.79026 1.90885 1.30922 1.71859 1.57973 1.46510 1.12181 1.20979 1.55726 1.20809 0.86012 0.91525 1.01721 1.20711 0.97412 0.94373 1.01109 1.21552 0.94776 1.00611 0.98731 0.87134 1.23168 1.03031 1.02422 0.91435 1.22543 0.98687 0.91632 1.06317 0.85275 1.20934 0.84682 0.94445 0.98647 1.22349 0.99458 0.96354 0.98977 1.20589 0.86013 0.95090 0.92898 0.94107 0.96965 0.91179 0.89124 0.90733 0.92929 0.75314 0.91232 0.90940 0.88457 0.92248 0.87057 0.88908 0.90581 0.89222 0.92459 0.94175 0.99675 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 10.66 21.65 0.23 -56.80 16 2 C -0.05 -2.80 5.31 84.86 0.45 -2.35 16 3 Si 0.97 45.06 29.56 68.60 2.03 47.08 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.26 -14.59 9.55 84.03 0.80 -13.79 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.61 -31.44 3.00 -699.08 -2.10 -33.54 16 10 C 0.14 5.85 6.52 86.36 0.56 6.41 16 11 C -0.12 -3.83 5.55 30.67 0.17 -3.66 16 12 C 0.18 6.51 2.37 45.02 0.11 6.62 16 13 N -0.73 -20.99 4.93 -457.68 -2.26 -23.24 16 14 C 0.69 22.46 8.18 179.05 1.46 23.92 16 15 O -0.63 -26.93 15.18 -3.99 -0.06 -26.99 16 16 N -0.62 -14.52 3.01 -848.83 -2.56 -17.08 16 17 C 0.12 2.61 6.05 86.17 0.52 3.13 16 18 C -0.10 -1.51 6.09 29.61 0.18 -1.33 16 19 C -0.14 -1.74 5.92 -11.90 -0.07 -1.81 16 20 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 21 C -0.16 -1.66 9.77 30.58 0.30 -1.36 16 22 C -0.17 -2.10 6.35 -10.96 -0.07 -2.16 16 23 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 24 C 0.14 2.12 6.14 86.37 0.53 2.66 16 25 C -0.13 -5.60 5.65 30.68 0.17 -5.43 16 26 C 0.18 9.48 5.26 86.36 0.45 9.93 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 2.21 7.66 -2.39 -0.02 2.19 16 33 H 0.41 8.79 6.03 -92.70 -0.56 8.23 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.97 6.74 -2.39 -0.02 1.95 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.09 1.22 5.65 -2.38 -0.01 1.20 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.80 8.06 -2.38 -0.02 1.78 16 44 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.07 3.88 5.96 -2.39 -0.01 3.86 16 Total: -1.00 -72.70 346.33 1.28 -71.42 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.42 Total: 18.39 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.57 Total: 20.76 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -6.68 Total: -130.66 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -26.99 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.70 1.28 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.116 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds