Wall clock time and date at job start Tue Mar 31 2020 07:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48504 * 109.46946 * 269.90668 * 3 2 1 5 5 H 1.48498 * 109.47514 * 29.90186 * 3 2 1 6 6 H 1.48500 * 109.47254 * 149.90624 * 3 2 1 7 7 C 1.38813 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 341.52533 * 7 2 1 9 9 N 1.36937 * 119.99792 * 161.51467 * 7 2 1 10 10 C 1.46919 * 120.63395 * 330.01391 * 9 7 2 11 11 C 1.53193 * 108.77738 * 233.58381 * 10 9 7 12 12 C 1.53039 * 109.31408 * 305.36787 * 11 10 9 13 13 N 1.46496 * 109.46231 * 181.38753 * 12 11 10 14 14 C 1.34770 * 120.00513 * 154.97405 * 13 12 11 15 15 O 1.21588 * 119.99617 * 355.13724 * 14 13 12 16 16 N 1.34771 * 120.00542 * 175.14126 * 14 13 12 17 17 C 1.45310 * 118.82203 * 185.64258 * 16 14 13 18 18 C 1.51710 * 111.99931 * 235.92432 * 17 16 14 19 19 C 1.52094 * 112.46582 * 318.66375 * 18 17 16 20 20 H 1.09001 * 115.19993 * 229.70769 * 19 18 17 21 21 C 1.53814 * 115.98275 * 89.30132 * 19 18 17 22 22 C 1.51969 * 121.29656 * 20.48173 * 19 18 17 23 23 H 1.09002 * 115.77388 * 210.31647 * 22 19 18 24 24 C 1.45523 * 118.81686 * 5.37553 * 16 14 13 25 25 C 1.53040 * 109.52728 * 61.36538 * 12 11 10 26 26 C 1.46932 * 120.62621 * 149.99097 * 9 7 2 27 27 H 0.97005 * 119.99568 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58863 * 113.79439 * 10 9 7 29 29 H 1.09005 * 109.70458 * 353.44330 * 10 9 7 30 30 H 1.09000 * 109.49678 * 185.40873 * 11 10 9 31 31 H 1.09000 * 109.49519 * 65.31455 * 11 10 9 32 32 H 1.09003 * 109.45295 * 301.35772 * 12 11 10 33 33 H 0.97000 * 119.99439 * 334.68973 * 13 12 11 34 34 H 1.08995 * 108.97726 * 356.57826 * 17 16 14 35 35 H 1.09007 * 108.97754 * 115.36230 * 17 16 14 36 36 H 1.09001 * 108.88223 * 79.43267 * 18 17 16 37 37 H 1.09002 * 108.88575 * 197.89168 * 18 17 16 38 38 H 1.08998 * 117.54052 * 354.76246 * 21 19 18 39 39 H 1.09001 * 117.54605 * 140.02860 * 21 19 18 40 40 H 1.08993 * 109.12048 * 260.54686 * 24 16 14 41 41 H 1.08997 * 109.11856 * 19.62820 * 24 16 14 42 42 H 1.09003 * 109.49499 * 58.58628 * 25 12 11 43 43 H 1.08996 * 109.49618 * 178.67960 * 25 12 11 44 44 H 1.09004 * 109.58220 * 246.20218 * 26 9 7 45 45 H 1.08998 * 109.58625 * 6.62427 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4997 2.0452 -1.4001 5 1 1.4468 2.6533 0.6979 6 1 3.5468 1.4407 0.7020 7 6 2.0103 -1.2022 0.0005 8 1 1.5120 -2.1133 0.2973 9 7 3.3266 -1.2329 -0.3755 10 6 3.8483 -0.2694 -1.3542 11 6 4.5398 -1.0394 -2.4838 12 6 5.6010 -1.9673 -1.8882 13 7 6.2871 -2.6809 -2.9681 14 6 7.5388 -3.1441 -2.7811 15 8 8.1317 -2.8938 -1.7495 16 7 8.1333 -3.8846 -3.7374 17 6 9.4321 -4.4745 -3.4604 18 6 10.4715 -4.0681 -4.4880 19 6 9.9204 -4.0731 -5.9056 20 1 10.5257 -4.6086 -6.6370 21 6 9.2844 -2.7576 -6.3859 22 6 8.4262 -3.9953 -6.1719 23 1 8.0793 -4.4952 -7.0763 24 6 7.4488 -4.0696 -5.0082 25 6 4.9309 -2.9778 -0.9543 26 6 4.2443 -2.2299 0.1927 27 1 -0.4850 0.8401 0.0004 28 1 4.5668 0.3914 -0.8693 29 1 3.0276 0.3202 -1.7629 30 1 5.0144 -0.3349 -3.1669 31 1 3.8019 -1.6311 -3.0255 32 1 6.3246 -1.3773 -1.3256 33 1 5.8388 -2.8235 -3.8164 34 1 9.7644 -4.1525 -2.4736 35 1 9.3365 -5.5603 -3.4650 36 1 10.8281 -3.0656 -4.2517 37 1 11.3112 -4.7611 -4.4335 38 1 9.1917 -1.9486 -5.6614 39 1 9.4779 -2.4499 -7.4135 40 1 6.9581 -5.0428 -5.0110 41 1 6.6953 -3.2906 -5.1245 42 1 4.1893 -3.5511 -1.5107 43 1 5.6841 -3.6532 -0.5486 44 1 4.9951 -1.7289 0.8039 45 1 3.6833 -2.9357 0.8052 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595498919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:54 Heat of formation + Delta-G solvation = 27.625318 kcal Electronic energy + Delta-G solvation = -24433.541825 eV Core-core repulsion = 21066.565060 eV Total energy + Delta-G solvation = -3366.976764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86390 -38.89745 -37.57555 -34.67589 -34.59359 -32.51274 -31.62702 -30.39421 -29.82337 -27.07866 -25.22647 -24.08058 -22.86145 -21.96127 -21.81026 -20.68888 -19.73666 -18.71727 -18.07498 -16.80396 -16.53606 -16.27209 -15.36695 -15.16896 -14.68336 -14.57262 -14.13286 -14.11172 -13.78107 -13.60762 -13.24771 -13.05150 -12.79192 -12.73225 -12.36235 -12.19502 -11.92907 -11.84697 -11.74712 -11.01863 -10.95063 -10.79092 -10.52690 -10.36390 -10.27548 -10.22174 -10.14385 -9.97224 -9.73197 -9.47855 -8.93709 -8.61614 -8.54711 -6.94073 -5.94237 -3.32941 2.61301 3.21626 3.31882 3.33292 3.49566 3.53682 3.86975 4.20138 4.41291 4.50339 4.53726 4.74142 4.87011 4.97052 4.98384 5.10336 5.17822 5.23568 5.35974 5.40669 5.44157 5.46630 5.53556 5.64825 5.71350 5.74721 5.78211 5.85466 5.94882 6.06824 6.15064 6.18997 6.32544 6.43283 6.50088 6.61503 6.67560 6.67863 6.78862 6.87880 7.01958 7.97068 7.99769 8.34950 8.64422 8.95368 9.72576 10.11555 11.21929 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.003447 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.900738 B = 8120.067040 C = 8353.227489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.166 3.834 13 N -0.739 5.739 14 C 0.703 3.297 15 O -0.589 6.589 16 N -0.625 5.625 17 C 0.129 3.871 18 C -0.105 4.105 19 C -0.142 4.142 20 H 0.103 0.897 21 C -0.176 4.176 22 C -0.155 4.155 23 H 0.111 0.889 24 C 0.143 3.857 25 C -0.141 4.141 26 C 0.151 3.849 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.392 0.608 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.964 -8.979 -14.252 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.715 3.285 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.062 3.938 13 N -0.394 5.394 14 C 0.404 3.596 15 O -0.466 6.466 16 N -0.363 5.363 17 C 0.005 3.995 18 C -0.143 4.143 19 C -0.161 4.161 20 H 0.121 0.879 21 C -0.213 4.213 22 C -0.174 4.174 23 H 0.129 0.871 24 C 0.019 3.981 25 C -0.181 4.181 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.224 -8.715 -13.448 25.028 hybrid contribution 0.181 0.875 -0.731 1.154 sum 19.405 -7.840 -14.179 25.280 Atomic orbital electron populations 1.69820 1.05742 1.26563 1.53231 1.25349 0.95255 0.97641 0.99276 0.86936 0.79930 0.84452 0.77191 1.21510 1.23124 1.19513 1.18926 0.83887 0.94506 1.41448 0.89741 1.44395 1.07384 1.35878 1.45396 1.21319 0.96985 0.92114 0.89281 1.22343 0.97391 0.98607 0.99614 1.20874 0.93222 0.92635 0.87063 1.45674 1.14445 1.61153 1.18164 1.15977 0.81693 0.78498 0.83432 1.90897 1.64744 1.62959 1.28044 1.46460 1.20807 1.54845 1.14183 1.20693 0.81810 0.97011 0.99987 1.21012 0.98179 1.02759 0.92374 1.21978 0.94757 1.01371 0.97992 0.87854 1.23118 1.04333 0.91565 1.02329 1.22036 0.92515 1.03001 0.99866 0.87127 1.20534 0.93697 1.01932 0.81910 1.22397 0.99179 0.98149 0.98398 1.20912 0.92215 0.91557 0.92898 0.92759 0.95532 0.90479 0.92339 0.91247 0.89861 0.77214 0.88314 0.92258 0.91315 0.90340 0.88732 0.88697 0.91210 0.90145 0.91969 0.92358 0.95662 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.97 55.49 0.78 -27.12 16 2 C 0.02 0.68 5.25 -17.43 -0.09 0.59 16 3 Si 0.88 22.45 24.34 -169.99 -4.14 18.31 16 4 H -0.29 -6.95 6.54 56.52 0.37 -6.58 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.81 6.75 56.52 0.38 -6.43 16 7 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.47 2.74 -172.32 -0.47 -14.95 16 10 C 0.13 2.80 4.19 -3.71 -0.02 2.78 16 11 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 12 C 0.17 2.77 2.46 -67.89 -0.17 2.60 16 13 N -0.74 -10.23 4.92 -58.64 -0.29 -10.52 16 14 C 0.70 10.45 8.17 -86.93 -0.71 9.74 16 15 O -0.59 -11.03 15.17 5.29 0.08 -10.95 16 16 N -0.63 -7.06 2.97 -182.46 -0.54 -7.61 16 17 C 0.13 1.30 6.30 -5.34 -0.03 1.26 16 18 C -0.10 -0.84 5.97 -27.85 -0.17 -1.00 16 19 C -0.14 -1.04 6.17 -91.18 -0.56 -1.60 16 20 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 21 C -0.18 -1.37 9.95 -26.76 -0.27 -1.63 16 22 C -0.16 -1.13 5.99 -92.02 -0.55 -1.68 16 23 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 24 C 0.14 1.21 6.19 -5.00 -0.03 1.18 16 25 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 26 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 29 H 0.08 1.80 4.63 -51.93 -0.24 1.56 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.56 7.51 -51.93 -0.39 1.17 16 33 H 0.39 4.42 6.10 -40.82 -0.25 4.17 16 34 H 0.10 1.19 6.73 -51.93 -0.35 0.84 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.64 5.83 -51.93 -0.30 0.34 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -32.74 340.81 -9.93 -42.67 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.41 Total: 2.31 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.07 Total: 2.72 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.53 Total: -60.20 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.74 -9.93 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.296 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds