Wall clock time and date at job start Tue Mar 31 2020 07:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48504 * 109.46946 * 269.90668 * 3 2 1 5 5 H 1.48498 * 109.47514 * 29.90186 * 3 2 1 6 6 H 1.48500 * 109.47254 * 149.90624 * 3 2 1 7 7 C 1.38813 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 341.52533 * 7 2 1 9 9 N 1.36937 * 119.99792 * 161.51467 * 7 2 1 10 10 C 1.46919 * 120.63395 * 330.01391 * 9 7 2 11 11 C 1.53193 * 108.77738 * 233.58381 * 10 9 7 12 12 C 1.53039 * 109.31408 * 305.36787 * 11 10 9 13 13 N 1.46496 * 109.46231 * 181.38753 * 12 11 10 14 14 C 1.34770 * 120.00513 * 154.97405 * 13 12 11 15 15 O 1.21588 * 119.99617 * 355.13724 * 14 13 12 16 16 N 1.34771 * 120.00542 * 175.14126 * 14 13 12 17 17 C 1.45310 * 118.82203 * 185.64258 * 16 14 13 18 18 C 1.51710 * 111.99931 * 235.92432 * 17 16 14 19 19 C 1.52094 * 112.46582 * 318.66375 * 18 17 16 20 20 H 1.09001 * 115.19993 * 229.70769 * 19 18 17 21 21 C 1.53814 * 115.98275 * 89.30132 * 19 18 17 22 22 C 1.51969 * 121.29656 * 20.48173 * 19 18 17 23 23 H 1.09002 * 115.77388 * 210.31647 * 22 19 18 24 24 C 1.45523 * 118.81686 * 5.37553 * 16 14 13 25 25 C 1.53040 * 109.52728 * 61.36538 * 12 11 10 26 26 C 1.46932 * 120.62621 * 149.99097 * 9 7 2 27 27 H 0.97005 * 119.99568 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58863 * 113.79439 * 10 9 7 29 29 H 1.09005 * 109.70458 * 353.44330 * 10 9 7 30 30 H 1.09000 * 109.49678 * 185.40873 * 11 10 9 31 31 H 1.09000 * 109.49519 * 65.31455 * 11 10 9 32 32 H 1.09003 * 109.45295 * 301.35772 * 12 11 10 33 33 H 0.97000 * 119.99439 * 334.68973 * 13 12 11 34 34 H 1.08995 * 108.97726 * 356.57826 * 17 16 14 35 35 H 1.09007 * 108.97754 * 115.36230 * 17 16 14 36 36 H 1.09001 * 108.88223 * 79.43267 * 18 17 16 37 37 H 1.09002 * 108.88575 * 197.89168 * 18 17 16 38 38 H 1.08998 * 117.54052 * 354.76246 * 21 19 18 39 39 H 1.09001 * 117.54605 * 140.02860 * 21 19 18 40 40 H 1.08993 * 109.12048 * 260.54686 * 24 16 14 41 41 H 1.08997 * 109.11856 * 19.62820 * 24 16 14 42 42 H 1.09003 * 109.49499 * 58.58628 * 25 12 11 43 43 H 1.08996 * 109.49618 * 178.67960 * 25 12 11 44 44 H 1.09004 * 109.58220 * 246.20218 * 26 9 7 45 45 H 1.08998 * 109.58625 * 6.62427 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4997 2.0452 -1.4001 5 1 1.4468 2.6533 0.6979 6 1 3.5468 1.4407 0.7020 7 6 2.0103 -1.2022 0.0005 8 1 1.5120 -2.1133 0.2973 9 7 3.3266 -1.2329 -0.3755 10 6 3.8483 -0.2694 -1.3542 11 6 4.5398 -1.0394 -2.4838 12 6 5.6010 -1.9673 -1.8882 13 7 6.2871 -2.6809 -2.9681 14 6 7.5388 -3.1441 -2.7811 15 8 8.1317 -2.8938 -1.7495 16 7 8.1333 -3.8846 -3.7374 17 6 9.4321 -4.4745 -3.4604 18 6 10.4715 -4.0681 -4.4880 19 6 9.9204 -4.0731 -5.9056 20 1 10.5257 -4.6086 -6.6370 21 6 9.2844 -2.7576 -6.3859 22 6 8.4262 -3.9953 -6.1719 23 1 8.0793 -4.4952 -7.0763 24 6 7.4488 -4.0696 -5.0082 25 6 4.9309 -2.9778 -0.9543 26 6 4.2443 -2.2299 0.1927 27 1 -0.4850 0.8401 0.0004 28 1 4.5668 0.3914 -0.8693 29 1 3.0276 0.3202 -1.7629 30 1 5.0144 -0.3349 -3.1669 31 1 3.8019 -1.6311 -3.0255 32 1 6.3246 -1.3773 -1.3256 33 1 5.8388 -2.8235 -3.8164 34 1 9.7644 -4.1525 -2.4736 35 1 9.3365 -5.5603 -3.4650 36 1 10.8281 -3.0656 -4.2517 37 1 11.3112 -4.7611 -4.4335 38 1 9.1917 -1.9486 -5.6614 39 1 9.4779 -2.4499 -7.4135 40 1 6.9581 -5.0428 -5.0110 41 1 6.6953 -3.2906 -5.1245 42 1 4.1893 -3.5511 -1.5107 43 1 5.6841 -3.6532 -0.5486 44 1 4.9951 -1.7289 0.8039 45 1 3.6833 -2.9357 0.8052 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595498919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:53 Heat of formation + Delta-G solvation = 6.554413 kcal Electronic energy + Delta-G solvation = -24434.455528 eV Core-core repulsion = 21066.565060 eV Total energy + Delta-G solvation = -3367.890467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84078 -39.96324 -38.94214 -36.16624 -35.52481 -34.13527 -32.82744 -31.98117 -31.33797 -27.89782 -26.81521 -25.16483 -24.43022 -23.46691 -22.49548 -21.73723 -21.25518 -19.83169 -18.97364 -18.57555 -17.70307 -17.17517 -16.98323 -16.12408 -15.94817 -15.87565 -15.53958 -15.34868 -15.07858 -14.81502 -14.62670 -14.33827 -14.13282 -13.84435 -13.71948 -13.56944 -13.44418 -12.78057 -12.60623 -12.53647 -12.43444 -12.27537 -12.02767 -11.80574 -11.72100 -11.57725 -11.37850 -11.28134 -10.87016 -10.80698 -10.70812 -10.14955 -9.49312 -8.93405 -8.16520 -5.52097 1.29708 1.42919 1.51844 1.61388 2.08233 2.41630 2.74798 2.88884 3.07215 3.31833 3.59170 3.75880 3.86481 3.91812 3.98171 4.12909 4.21991 4.24114 4.29744 4.31673 4.40349 4.47852 4.58839 4.63524 4.68820 4.80832 4.84116 4.87845 4.90298 4.92056 5.02366 5.04654 5.06885 5.10133 5.15197 5.19898 5.34512 5.39458 5.53219 5.66371 5.88514 5.91046 6.13671 6.91010 6.93663 7.52978 7.60433 8.02362 9.03464 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.003447 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.900738 B = 8120.067040 C = 8353.227489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.031 4.031 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.122 3.878 11 C -0.126 4.126 12 C 0.177 3.823 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.633 6.633 16 N -0.619 5.619 17 C 0.124 3.876 18 C -0.101 4.101 19 C -0.142 4.142 20 H 0.123 0.877 21 C -0.184 4.184 22 C -0.150 4.150 23 H 0.134 0.866 24 C 0.134 3.866 25 C -0.126 4.126 26 C 0.147 3.853 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.934 -9.553 -16.844 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.226 4.226 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.070 0.930 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.165 4.165 12 C 0.071 3.929 13 N -0.384 5.384 14 C 0.399 3.601 15 O -0.514 6.514 16 N -0.355 5.355 17 C 0.001 3.999 18 C -0.139 4.139 19 C -0.161 4.161 20 H 0.141 0.859 21 C -0.221 4.221 22 C -0.169 4.169 23 H 0.152 0.848 24 C 0.012 3.988 25 C -0.167 4.167 26 C 0.022 3.978 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.240 -9.323 -16.114 28.244 hybrid contribution -0.388 0.939 0.092 1.021 sum 20.852 -8.384 -16.022 27.600 Atomic orbital electron populations 1.69943 1.07361 1.27288 1.55687 1.25943 0.95831 1.00879 0.99917 0.85941 0.78300 0.80149 0.78179 1.19162 1.23932 1.19271 1.18852 0.85566 0.93358 1.40154 0.93000 1.44497 1.06416 1.36944 1.46518 1.21378 0.96681 0.92189 0.90115 1.22148 0.97327 0.98828 0.98233 1.20536 0.92644 0.92220 0.87474 1.45329 1.14203 1.60766 1.18102 1.16145 0.81717 0.78699 0.83533 1.90871 1.65775 1.64628 1.30117 1.46538 1.21032 1.53479 1.14445 1.20803 0.81804 0.97773 0.99542 1.20975 0.98151 1.02380 0.92398 1.22075 0.95163 1.01186 0.97639 0.85908 1.23096 1.05236 0.91232 1.02498 1.22102 0.92117 1.02607 1.00032 0.84791 1.20813 0.94118 1.03038 0.80862 1.22205 0.98947 0.97991 0.97526 1.21011 0.91728 0.91020 0.94061 0.92852 0.95232 0.92144 0.89463 0.90722 0.91648 0.75395 0.90826 0.90608 0.92909 0.88187 0.91023 0.87334 0.89553 0.89580 0.91793 0.91995 0.95433 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.99 13.97 21.65 0.30 -59.68 16 2 C -0.03 -1.80 5.25 84.86 0.45 -1.35 16 3 Si 0.95 46.56 24.34 68.60 1.67 48.23 16 4 H -0.27 -12.03 6.54 99.48 0.65 -11.38 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.94 6.75 99.48 0.67 -12.27 16 7 C -0.25 -14.21 10.03 84.03 0.84 -13.37 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 9 N -0.62 -29.35 2.74 -699.09 -1.91 -31.26 16 10 C 0.12 5.07 4.19 86.36 0.36 5.44 16 11 C -0.13 -3.99 5.55 30.67 0.17 -3.82 16 12 C 0.18 5.58 2.46 45.02 0.11 5.69 16 13 N -0.73 -18.58 4.92 -457.70 -2.25 -20.84 16 14 C 0.70 19.85 8.17 179.06 1.46 21.31 16 15 O -0.63 -23.61 15.17 -3.99 -0.06 -23.67 16 16 N -0.62 -12.82 2.97 -849.44 -2.52 -15.34 16 17 C 0.12 2.32 6.30 86.18 0.54 2.86 16 18 C -0.10 -1.41 5.97 29.87 0.18 -1.23 16 19 C -0.14 -1.64 6.17 -11.16 -0.07 -1.70 16 20 H 0.12 0.98 8.14 -2.39 -0.02 0.97 16 21 C -0.18 -2.38 9.95 30.58 0.30 -2.08 16 22 C -0.15 -1.65 5.99 -11.70 -0.07 -1.72 16 23 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 24 C 0.13 1.85 6.19 86.29 0.53 2.38 16 25 C -0.13 -4.30 5.65 30.67 0.17 -4.13 16 26 C 0.15 6.00 6.52 86.36 0.56 6.56 16 27 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 28 H 0.03 1.23 7.08 -2.39 -0.02 1.21 16 29 H 0.06 2.73 4.63 -2.38 -0.01 2.71 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.36 7.51 -2.39 -0.02 2.34 16 33 H 0.41 7.95 6.10 -92.71 -0.57 7.38 16 34 H 0.07 1.77 6.73 -2.39 -0.02 1.75 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.16 16 36 H 0.05 0.91 8.05 -2.39 -0.02 0.89 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.09 5.83 -2.39 -0.01 1.07 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 Total: -1.00 -72.32 340.81 1.10 -71.22 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.32 Total: 16.51 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.55 Total: 14.83 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.38 Total: -127.12 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -72.32 1.10 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.776 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds