Wall clock time and date at job start Tue Mar 31 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47044 * 299.99642 * 3 2 1 6 6 H 1.48500 * 109.47232 * 59.99466 * 3 2 1 7 7 C 1.38807 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00199 * 163.07242 * 7 2 1 9 9 N 1.36944 * 119.99787 * 343.07461 * 7 2 1 10 10 C 1.46920 * 120.63210 * 331.84680 * 9 7 2 11 11 C 1.53193 * 108.77562 * 233.58960 * 10 9 7 12 12 C 1.53041 * 109.31129 * 305.36443 * 11 10 9 13 13 N 1.46504 * 109.45973 * 181.38664 * 12 11 10 14 14 C 1.34774 * 119.99805 * 154.97353 * 13 12 11 15 15 O 1.21587 * 120.00327 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99953 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47156 * 180.02562 * 17 16 14 19 19 C 1.30531 * 124.45173 * 94.97421 * 18 17 16 20 20 C 1.51099 * 111.10810 * 180.26693 * 19 18 17 21 21 C 1.54803 * 104.64402 * 343.19815 * 20 19 18 22 22 C 1.51103 * 124.44901 * 275.00514 * 18 17 16 23 23 C 1.53043 * 109.52815 * 61.37228 * 12 11 10 24 24 C 1.46929 * 120.62631 * 151.82594 * 9 7 2 25 25 H 0.96998 * 120.00243 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58982 * 113.80117 * 10 9 7 27 27 H 1.08998 * 109.70699 * 353.44583 * 10 9 7 28 28 H 1.09000 * 109.49668 * 185.41523 * 11 10 9 29 29 H 1.08994 * 109.49896 * 65.31528 * 11 10 9 30 30 H 1.08999 * 109.45764 * 301.35971 * 12 11 10 31 31 H 0.96999 * 119.99681 * 334.97088 * 13 12 11 32 32 H 0.97002 * 120.00156 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47134 * 60.00116 * 17 16 14 34 34 H 1.08996 * 109.47227 * 300.00059 * 17 16 14 35 35 H 1.08003 * 124.43962 * 0.02562 * 19 18 17 36 36 H 1.09002 * 110.38723 * 102.13221 * 20 19 18 37 37 H 1.08999 * 110.38902 * 224.51027 * 20 19 18 38 38 H 1.08992 * 111.24959 * 266.87322 * 21 20 19 39 39 H 1.08997 * 110.89079 * 142.88354 * 21 20 19 40 40 H 1.09004 * 110.38578 * 315.22290 * 22 18 17 41 41 H 1.09001 * 110.39297 * 77.48415 * 22 18 17 42 42 H 1.09000 * 109.49671 * 58.57852 * 23 12 11 43 43 H 1.08997 * 109.49908 * 178.67644 * 23 12 11 44 44 H 1.09000 * 109.58151 * 246.19723 * 24 9 7 45 45 H 1.08996 * 109.59091 * 6.48085 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3188 2.4146 12 6 0.8122 -4.7006 1.8366 13 7 1.0398 -5.6472 2.9313 14 6 0.8360 -6.9650 2.7358 15 8 0.4627 -7.3682 1.6512 16 7 1.0458 -7.8360 3.7428 17 6 0.8237 -9.2684 3.5305 18 6 1.1268 -10.0177 4.8024 19 6 0.2331 -10.3528 5.6928 20 6 0.8674 -11.0884 6.8502 21 6 2.2534 -11.5301 6.3209 22 6 2.5053 -10.4791 5.2148 23 6 2.0678 -4.6169 0.9655 24 6 1.8141 -3.6529 -0.1977 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6769 -2.6405 0.7368 27 1 0.0967 -1.3346 1.6688 28 1 -0.3831 -3.3837 3.0536 29 1 1.3472 -2.9672 2.9998 30 1 -0.0279 -5.0407 1.2311 31 1 1.3372 -5.3255 3.7967 32 1 1.3432 -7.5143 4.6082 33 1 1.4782 -9.6235 2.7345 34 1 -0.2156 -9.4371 3.2487 35 1 -0.8207 -10.1298 5.6144 36 1 0.9794 -10.4238 7.7069 37 1 0.2700 -11.9594 7.1198 38 1 2.2145 -12.5361 5.9032 39 1 3.0083 -11.4623 7.1042 40 1 3.0221 -10.9338 4.3697 41 1 3.0839 -9.6431 5.6077 42 1 2.9025 -4.2529 1.5645 43 1 2.3049 -5.6058 0.5732 44 1 1.0404 -4.0606 -0.8484 45 1 2.7334 -3.5131 -0.7663 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595501004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:50 Heat of formation + Delta-G solvation = -2.008818 kcal Electronic energy + Delta-G solvation = -23298.941846 eV Core-core repulsion = 19930.680049 eV Total energy + Delta-G solvation = -3368.261797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01729 -38.96428 -37.40959 -34.68929 -34.24615 -32.10429 -30.46492 -29.90005 -29.12413 -28.67250 -25.57106 -24.52597 -22.24513 -21.90740 -21.25374 -20.55574 -19.41634 -18.77143 -17.84456 -16.84352 -16.31070 -15.87446 -15.40013 -15.24392 -14.82653 -14.37162 -13.96661 -13.75437 -13.55079 -13.43686 -13.10005 -12.93462 -12.61049 -12.30062 -12.15981 -12.00087 -11.57855 -11.50665 -11.44211 -11.41158 -11.09839 -10.81416 -10.71456 -10.44776 -10.22929 -10.04370 -9.99204 -9.72638 -9.51784 -9.16014 -9.12038 -8.55754 -8.40685 -6.65762 -5.77593 -3.19653 1.63842 3.03504 3.37909 3.42481 3.45849 3.48215 4.17374 4.20698 4.45755 4.51160 4.64696 4.73351 5.00458 5.17665 5.32440 5.36759 5.38504 5.43306 5.46759 5.53932 5.55906 5.61819 5.65184 5.66476 5.82252 5.94478 6.12546 6.17065 6.33329 6.40403 6.43051 6.53206 6.54307 6.62163 6.65670 6.84488 6.95933 7.03166 7.16811 7.35089 7.64819 7.81624 8.20396 8.46803 8.80982 9.22946 9.86267 10.43544 11.31356 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.002496 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.310258 B =11216.880586 C =11257.647744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.592 6.592 16 N -0.748 5.748 17 C 0.189 3.811 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.139 4.139 24 C 0.147 3.853 25 H 0.253 0.747 26 H 0.021 0.979 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.390 0.610 32 H 0.394 0.606 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.021 0.979 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -20.195 15.032 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.405 5.405 17 C 0.065 3.935 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.139 4.139 21 C -0.163 4.163 22 C -0.130 4.130 23 C -0.179 4.179 24 C 0.020 3.980 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.251 -20.414 13.963 24.835 hybrid contribution 0.630 1.153 0.874 1.578 sum 2.881 -19.261 14.837 24.483 Atomic orbital electron populations 1.70039 1.05235 1.25376 1.54155 1.25062 0.95305 0.98429 1.01005 0.86225 0.79353 0.83971 0.77244 1.20283 1.21751 1.21602 1.19238 0.92589 0.84761 1.41362 0.91612 1.44111 1.35814 1.01683 1.49997 1.20737 0.88917 0.97873 0.87682 1.22541 1.00452 0.94784 1.00814 1.20908 0.98325 0.87504 0.86774 1.45544 1.72731 1.04919 1.16068 1.16031 0.78571 0.81286 0.84025 1.90920 1.53592 1.78005 1.24446 1.45160 1.74723 1.06378 1.14228 1.19709 1.01491 0.78376 0.93893 1.22083 0.96162 1.00927 0.96368 1.23317 0.99133 0.98531 0.94993 1.21416 0.95806 0.99618 0.97088 1.22479 0.96831 0.98933 0.98036 1.21293 0.94755 0.98408 0.98500 1.22387 0.97264 0.99471 0.98822 1.20882 0.97873 0.86502 0.92708 0.93679 0.96091 0.89053 0.92801 0.92262 0.90094 0.77673 0.77295 0.91109 0.91148 0.85620 0.90429 0.91034 0.91002 0.90925 0.90973 0.90641 0.92497 0.92715 0.96153 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 10 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 12 C 0.17 3.04 2.42 -67.88 -0.16 2.88 16 13 N -0.74 -10.81 5.08 -58.63 -0.30 -11.10 16 14 C 0.70 10.87 8.53 -86.92 -0.74 10.13 16 15 O -0.59 -11.77 16.01 5.29 0.08 -11.69 16 16 N -0.75 -8.43 5.55 -66.42 -0.37 -8.80 16 17 C 0.19 1.98 6.10 -5.20 -0.03 1.95 16 18 C -0.15 -1.25 5.53 -100.74 -0.56 -1.80 16 19 C -0.14 -1.02 10.58 -35.70 -0.38 -1.40 16 20 C -0.10 -0.60 6.82 -26.74 -0.18 -0.78 16 21 C -0.13 -0.71 7.20 -24.92 -0.18 -0.89 16 22 C -0.09 -0.64 6.76 -26.82 -0.18 -0.82 16 23 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 24 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 25 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 31 H 0.39 4.56 8.62 -40.82 -0.35 4.20 16 32 H 0.39 3.43 8.48 -40.82 -0.35 3.08 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -32.12 360.07 -10.77 -42.89 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.71 Total: 3.94 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.99 Total: 3.86 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.56 Total: -61.07 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.12 -10.77 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.883 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds