Wall clock time and date at job start Tue Mar 31 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47044 * 299.99642 * 3 2 1 6 6 H 1.48500 * 109.47232 * 59.99466 * 3 2 1 7 7 C 1.38807 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00199 * 163.07242 * 7 2 1 9 9 N 1.36944 * 119.99787 * 343.07461 * 7 2 1 10 10 C 1.46920 * 120.63210 * 331.84680 * 9 7 2 11 11 C 1.53193 * 108.77562 * 233.58960 * 10 9 7 12 12 C 1.53041 * 109.31129 * 305.36443 * 11 10 9 13 13 N 1.46504 * 109.45973 * 181.38664 * 12 11 10 14 14 C 1.34774 * 119.99805 * 154.97353 * 13 12 11 15 15 O 1.21587 * 120.00327 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99953 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47156 * 180.02562 * 17 16 14 19 19 C 1.30531 * 124.45173 * 94.97421 * 18 17 16 20 20 C 1.51099 * 111.10810 * 180.26693 * 19 18 17 21 21 C 1.54803 * 104.64402 * 343.19815 * 20 19 18 22 22 C 1.51103 * 124.44901 * 275.00514 * 18 17 16 23 23 C 1.53043 * 109.52815 * 61.37228 * 12 11 10 24 24 C 1.46929 * 120.62631 * 151.82594 * 9 7 2 25 25 H 0.96998 * 120.00243 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58982 * 113.80117 * 10 9 7 27 27 H 1.08998 * 109.70699 * 353.44583 * 10 9 7 28 28 H 1.09000 * 109.49668 * 185.41523 * 11 10 9 29 29 H 1.08994 * 109.49896 * 65.31528 * 11 10 9 30 30 H 1.08999 * 109.45764 * 301.35971 * 12 11 10 31 31 H 0.96999 * 119.99681 * 334.97088 * 13 12 11 32 32 H 0.97002 * 120.00156 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47134 * 60.00116 * 17 16 14 34 34 H 1.08996 * 109.47227 * 300.00059 * 17 16 14 35 35 H 1.08003 * 124.43962 * 0.02562 * 19 18 17 36 36 H 1.09002 * 110.38723 * 102.13221 * 20 19 18 37 37 H 1.08999 * 110.38902 * 224.51027 * 20 19 18 38 38 H 1.08992 * 111.24959 * 266.87322 * 21 20 19 39 39 H 1.08997 * 110.89079 * 142.88354 * 21 20 19 40 40 H 1.09004 * 110.38578 * 315.22290 * 22 18 17 41 41 H 1.09001 * 110.39297 * 77.48415 * 22 18 17 42 42 H 1.09000 * 109.49671 * 58.57852 * 23 12 11 43 43 H 1.08997 * 109.49908 * 178.67644 * 23 12 11 44 44 H 1.09000 * 109.58151 * 246.19723 * 24 9 7 45 45 H 1.08996 * 109.59091 * 6.48085 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3188 2.4146 12 6 0.8122 -4.7006 1.8366 13 7 1.0398 -5.6472 2.9313 14 6 0.8360 -6.9650 2.7358 15 8 0.4627 -7.3682 1.6512 16 7 1.0458 -7.8360 3.7428 17 6 0.8237 -9.2684 3.5305 18 6 1.1268 -10.0177 4.8024 19 6 0.2331 -10.3528 5.6928 20 6 0.8674 -11.0884 6.8502 21 6 2.2534 -11.5301 6.3209 22 6 2.5053 -10.4791 5.2148 23 6 2.0678 -4.6169 0.9655 24 6 1.8141 -3.6529 -0.1977 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6769 -2.6405 0.7368 27 1 0.0967 -1.3346 1.6688 28 1 -0.3831 -3.3837 3.0536 29 1 1.3472 -2.9672 2.9998 30 1 -0.0279 -5.0407 1.2311 31 1 1.3372 -5.3255 3.7967 32 1 1.3432 -7.5143 4.6082 33 1 1.4782 -9.6235 2.7345 34 1 -0.2156 -9.4371 3.2487 35 1 -0.8207 -10.1298 5.6144 36 1 0.9794 -10.4238 7.7069 37 1 0.2700 -11.9594 7.1198 38 1 2.2145 -12.5361 5.9032 39 1 3.0083 -11.4623 7.1042 40 1 3.0221 -10.9338 4.3697 41 1 3.0839 -9.6431 5.6077 42 1 2.9025 -4.2529 1.5645 43 1 2.3049 -5.6058 0.5732 44 1 1.0404 -4.0606 -0.8484 45 1 2.7334 -3.5131 -0.7663 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595501004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:50 Heat of formation + Delta-G solvation = -22.497432 kcal Electronic energy + Delta-G solvation = -23299.830299 eV Core-core repulsion = 19930.680049 eV Total energy + Delta-G solvation = -3369.150250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22943 -39.69158 -38.97501 -36.07685 -35.56572 -33.88908 -31.90322 -31.39895 -30.39227 -29.24092 -27.04528 -25.80988 -23.95048 -23.57357 -21.87421 -21.69087 -21.04984 -19.79458 -18.94657 -18.45280 -17.54700 -16.83604 -16.60144 -16.23782 -16.20807 -15.81932 -15.38747 -15.32243 -14.90213 -14.81286 -14.61798 -14.11522 -14.02666 -13.55410 -13.21128 -13.01932 -12.76699 -12.62401 -12.58134 -12.51027 -12.22138 -12.14793 -12.02187 -11.98663 -11.91422 -11.86406 -11.55835 -11.41292 -11.23421 -10.56468 -10.31909 -9.75418 -9.73083 -8.70723 -7.87489 -5.33386 0.97297 1.48070 1.49815 1.60804 1.93863 2.17670 2.52335 3.27156 3.39692 3.59255 3.67170 3.67399 3.91113 4.07418 4.17993 4.22955 4.35261 4.42739 4.46802 4.51269 4.65082 4.65884 4.82059 4.86143 4.88322 4.90156 5.03162 5.04074 5.04864 5.07443 5.16610 5.22072 5.30107 5.39005 5.45556 5.48298 5.58762 5.61523 5.65266 5.70754 5.90869 6.05490 6.39485 7.13952 7.14721 7.61547 7.84003 8.37310 9.19873 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.002496 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.310258 B =11216.880586 C =11257.647744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.638 6.638 16 N -0.728 5.728 17 C 0.191 3.809 18 C -0.166 4.166 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.123 4.123 24 C 0.145 3.855 25 H 0.251 0.749 26 H -0.006 1.006 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -21.060 17.448 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.380 5.380 14 C 0.399 3.601 15 O -0.520 6.520 16 N -0.384 5.384 17 C 0.067 3.933 18 C -0.167 4.167 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.160 4.160 22 C -0.130 4.130 23 C -0.163 4.163 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.012 0.988 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.587 -21.314 16.452 27.163 hybrid contribution 0.178 1.341 0.094 1.356 sum 3.765 -19.973 16.546 26.209 Atomic orbital electron populations 1.70196 1.06708 1.25898 1.55427 1.25840 0.96074 1.01592 1.01150 0.85172 0.78593 0.79658 0.76785 1.19065 1.22165 1.21355 1.19555 0.92868 0.85802 1.40955 0.91464 1.44367 1.35950 1.02198 1.50764 1.20567 0.87707 0.97762 0.88756 1.22252 1.01958 0.93535 0.98908 1.20494 0.96919 0.87746 0.87310 1.45125 1.72627 1.04271 1.16026 1.16175 0.78254 0.81628 0.84080 1.90898 1.55641 1.78773 1.26645 1.45000 1.73287 1.06260 1.13903 1.19693 1.00598 0.77892 0.95131 1.21926 0.97261 1.01823 0.95667 1.23539 0.99188 0.97390 0.95063 1.21465 0.95817 0.99976 0.96636 1.22495 0.97102 0.98551 0.97871 1.21316 0.93938 0.98925 0.98839 1.22178 0.97925 0.98461 0.97767 1.20967 0.97342 0.85967 0.93894 0.94007 0.98800 0.91752 0.90535 0.91026 0.92741 0.75429 0.75391 0.92253 0.92231 0.85431 0.89454 0.90082 0.90854 0.89694 0.91419 0.90250 0.91507 0.92479 0.97580 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.57 11.19 21.65 0.24 -55.32 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.26 -14.49 9.58 84.03 0.81 -13.68 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -31.21 2.99 -699.11 -2.09 -33.30 16 10 C 0.18 8.63 5.30 86.36 0.46 9.09 16 11 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 12 C 0.18 6.35 2.42 45.02 0.11 6.46 16 13 N -0.73 -19.79 5.08 -457.67 -2.33 -22.11 16 14 C 0.70 20.84 8.53 179.06 1.53 22.36 16 15 O -0.64 -25.40 16.01 -3.99 -0.06 -25.46 16 16 N -0.73 -15.19 5.55 -482.31 -2.68 -17.87 16 17 C 0.19 3.83 6.10 85.63 0.52 4.35 16 18 C -0.17 -2.40 5.53 -15.88 -0.09 -2.49 16 19 C -0.13 -1.64 10.58 26.26 0.28 -1.37 16 20 C -0.10 -0.91 6.82 30.59 0.21 -0.70 16 21 C -0.12 -1.09 7.20 31.77 0.23 -0.86 16 22 C -0.09 -1.10 6.76 30.53 0.21 -0.90 16 23 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 24 C 0.14 6.42 6.52 86.36 0.56 6.99 16 25 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 31 H 0.41 8.24 8.62 -92.71 -0.80 7.44 16 32 H 0.41 6.03 8.48 -92.71 -0.79 5.25 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.06 2.50 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -70.28 360.07 0.09 -70.19 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.60 Total: 19.11 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 5.58 Total: 18.03 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.85 Total: -128.60 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.28 0.09 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.694 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds