Wall clock time and date at job start Tue Mar 31 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00099 * 2 1 4 4 C 1.52999 * 109.46990 * 286.63199 * 3 2 1 5 5 O 1.42905 * 109.46962 * 66.53429 * 4 3 2 6 6 C 1.42900 * 113.99665 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46931 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99601 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99874 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00029 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47442 * 60.00056 * 11 9 7 13 13 H 1.48498 * 109.47142 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47033 * 299.99981 * 11 9 7 15 15 C 1.46907 * 110.99652 * 123.95301 * 2 1 3 16 16 H 1.08999 * 109.47258 * 50.64208 * 15 2 1 17 17 C 1.53002 * 109.46972 * 290.63885 * 15 2 1 18 18 O 1.42898 * 109.46875 * 292.63675 * 17 15 2 19 19 C 1.52995 * 109.46860 * 170.63916 * 15 2 1 20 20 C 1.50699 * 109.47373 * 294.27364 * 19 15 2 21 21 C 1.38238 * 120.00405 * 88.01865 * 20 19 15 22 22 C 1.38235 * 120.00463 * 180.02562 * 21 20 19 23 23 C 1.38237 * 119.99687 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99943 * 0.25647 * 23 22 21 25 25 C 1.38233 * 120.00106 * 359.48761 * 24 23 22 26 26 H 1.09004 * 109.47073 * 305.63647 * 1 2 3 27 27 H 1.08997 * 109.46883 * 65.63292 * 1 2 3 28 28 H 1.08996 * 109.47119 * 185.63479 * 1 2 3 29 29 H 1.08998 * 109.47169 * 46.63443 * 3 2 1 30 30 H 1.09001 * 109.47114 * 166.63578 * 3 2 1 31 31 H 1.08998 * 109.47002 * 186.53240 * 4 3 2 32 32 H 1.08997 * 109.47440 * 306.53446 * 4 3 2 33 33 H 1.09005 * 109.46928 * 299.99089 * 6 5 4 34 34 H 1.08999 * 109.47660 * 59.99559 * 6 5 4 35 35 H 0.97006 * 119.99857 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47313 * 52.64198 * 17 15 2 37 37 H 1.08996 * 109.46682 * 172.64063 * 17 15 2 38 38 H 0.96703 * 113.99879 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.47613 * 174.27304 * 19 15 2 40 40 H 1.09007 * 109.47385 * 54.27223 * 19 15 2 41 41 H 1.08008 * 119.99480 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.00010 * 179.97438 * 22 21 20 43 43 H 1.07996 * 119.99609 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.99515 * 179.72079 * 24 23 22 45 45 H 1.08001 * 119.99940 * 180.22955 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7928 1.9955 -1.3822 5 8 0.3951 2.1603 -1.6300 6 6 0.0947 2.7383 -2.9019 7 6 -1.3992 2.8644 -3.0560 8 1 -2.0536 2.5356 -2.2623 9 6 -1.9304 3.3995 -4.2103 10 7 -1.1335 3.8004 -5.1766 11 14 -3.7820 3.5552 -4.4017 12 1 -4.3199 4.4230 -3.3234 13 1 -4.0942 4.1571 -5.7228 14 1 -4.4038 2.2097 -4.3108 15 6 1.9954 -0.7660 1.1377 16 1 1.5172 -1.7450 1.1690 17 6 1.7035 -0.0139 2.4377 18 8 2.4669 1.1936 2.4711 19 6 3.5069 -0.9417 0.9785 20 6 3.7886 -1.8023 -0.2261 21 6 3.9182 -1.2229 -1.4745 22 6 4.1761 -2.0123 -2.5796 23 6 4.3037 -3.3813 -2.4364 24 6 4.1683 -3.9613 -1.1889 25 6 3.9157 -3.1713 -0.0831 26 1 -0.3633 0.5988 0.8352 27 1 -0.3633 0.4240 -0.9361 28 1 -0.3633 -1.0227 0.1009 29 1 1.4670 1.9635 0.7471 30 1 3.0592 1.3523 0.2375 31 1 2.2852 2.9673 -1.4177 32 1 2.2221 1.3426 -2.1421 33 1 0.5518 3.7255 -2.9694 34 1 0.4887 2.1005 -3.6932 35 1 -1.5072 4.1766 -5.9889 36 1 0.6415 0.2261 2.4879 37 1 1.9752 -0.6393 3.2880 38 1 2.3311 1.7228 3.2690 39 1 3.9130 -1.4201 1.8697 40 1 3.9741 0.0341 0.8451 41 1 3.8181 -0.1533 -1.5864 42 1 4.2769 -1.5596 -3.5549 43 1 4.5048 -3.9981 -3.2998 44 1 4.2636 -5.0314 -1.0778 45 1 3.8136 -3.6241 0.8921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595591408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:10 Heat of formation + Delta-G solvation = -68.069195 kcal Electronic energy + Delta-G solvation = -24261.264280 eV Core-core repulsion = 20857.845139 eV Total energy + Delta-G solvation = -3403.419141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69354 -38.39364 -36.65000 -35.35092 -33.01082 -32.53276 -30.73301 -30.08135 -28.71874 -26.94354 -25.91714 -24.51846 -22.39577 -22.26403 -22.01363 -21.19642 -19.35390 -17.62991 -16.68018 -16.40089 -15.93677 -15.71892 -15.17212 -15.05225 -14.73885 -14.53097 -14.23909 -14.01663 -13.59974 -13.22234 -13.04116 -12.87404 -12.69106 -12.52937 -12.11390 -11.78635 -11.68775 -11.49783 -11.25310 -11.07301 -11.00332 -10.81755 -10.79645 -10.62965 -10.53478 -10.32854 -10.05967 -9.80181 -9.04136 -8.74812 -8.71149 -8.49251 -8.07206 -7.82420 -6.06648 -4.08125 1.52493 1.59721 3.33770 3.36631 3.40171 3.94637 4.07169 4.32156 4.39474 4.77777 4.96192 5.01195 5.09120 5.13026 5.21693 5.23333 5.29728 5.31717 5.38077 5.54915 5.63823 5.67940 5.72103 5.85682 5.97150 6.03367 6.06992 6.11912 6.20612 6.21298 6.26137 6.41337 6.57732 6.61381 6.72081 6.84555 6.93991 7.18716 7.20834 7.45674 7.48880 7.52982 7.53997 7.83006 8.21780 8.66661 9.05722 9.56576 11.04855 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.004010 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.373467 B = 6980.538290 C = 8046.625442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.521 5.521 3 C 0.068 3.932 4 C 0.063 3.937 5 O -0.391 6.391 6 C 0.195 3.805 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.906 3.094 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.089 3.911 16 H 0.090 0.910 17 C 0.043 3.957 18 O -0.561 6.561 19 C -0.069 4.069 20 C -0.066 4.066 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.018 0.982 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.002 0.998 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.372 0.628 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 -12.096 14.067 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.244 5.244 3 C -0.059 4.059 4 C -0.015 4.015 5 O -0.311 6.311 6 C 0.121 3.879 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.021 4.021 16 H 0.108 0.892 17 C -0.037 4.037 18 O -0.366 6.366 19 C -0.106 4.106 20 C -0.067 4.067 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.144 4.144 26 H 0.037 0.963 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.218 0.782 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.423 -12.517 12.985 21.349 hybrid contribution -1.340 0.738 0.836 1.743 sum 10.083 -11.780 13.821 20.772 Atomic orbital electron populations 1.22646 0.86384 0.99730 1.03869 1.62166 1.08635 1.14169 1.39453 1.22242 1.00011 0.87875 0.95767 1.22390 0.85698 0.97369 0.96065 1.87826 1.20325 1.83304 1.39678 1.20144 0.96333 0.91835 0.79604 1.21014 0.91031 1.40938 1.02106 0.91787 1.24932 0.98711 0.95353 0.95448 1.69958 1.34965 1.42059 1.06789 0.86436 0.84595 0.78476 0.77181 1.20124 1.21198 1.20051 1.21912 0.95566 0.96936 0.87648 0.89234 1.22965 0.95098 0.86656 0.98958 1.86656 1.69185 1.35218 1.45573 1.20597 0.95135 0.99831 0.95081 1.19731 0.98290 0.93497 0.95133 1.21067 0.97241 1.00298 0.91841 1.21186 0.99864 0.93907 0.98839 1.21070 1.01340 0.95120 0.97174 1.21009 1.01227 0.99250 0.93001 1.20961 1.01631 0.93396 0.98378 0.96328 0.87496 0.93297 0.93171 0.89922 0.94677 0.94082 0.98061 0.97804 0.92681 0.93334 0.93870 0.78166 0.91351 0.89824 0.85927 0.86330 0.86710 0.86771 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.66 60.07 0.52 0.87 16 2 N -0.52 -7.87 3.99 -234.88 -0.94 -8.81 16 3 C 0.07 1.08 3.61 -3.83 -0.01 1.07 16 4 C 0.06 1.21 6.24 37.16 0.23 1.44 16 5 O -0.39 -9.34 7.43 -35.23 -0.26 -9.61 16 6 C 0.20 5.40 5.69 36.01 0.20 5.61 16 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.44 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 11 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.09 1.06 2.27 -67.71 -0.15 0.91 16 16 H 0.09 1.04 7.95 -51.93 -0.41 0.63 16 17 C 0.04 0.44 6.35 37.16 0.24 0.67 16 18 O -0.56 -5.81 9.40 -35.23 -0.33 -6.14 16 19 C -0.07 -0.78 4.44 -27.89 -0.12 -0.90 16 20 C -0.07 -0.83 4.99 -104.62 -0.52 -1.35 16 21 C -0.09 -1.18 9.24 -39.58 -0.37 -1.55 16 22 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 23 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.13 -1.43 9.69 -39.58 -0.38 -1.81 16 26 H 0.02 0.30 6.73 -51.93 -0.35 -0.05 16 27 H 0.11 2.20 5.73 -51.93 -0.30 1.90 16 28 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 29 H 0.05 0.84 6.50 -51.93 -0.34 0.51 16 30 H 0.08 1.20 5.23 -51.93 -0.27 0.93 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 33 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 34 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.05 0.53 6.59 -51.93 -0.34 0.19 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.37 2.42 9.12 45.56 0.42 2.83 16 39 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 40 H 0.08 1.02 5.63 -51.93 -0.29 0.73 16 41 H 0.12 1.75 7.33 -52.48 -0.38 1.36 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -32.16 356.51 -8.85 -41.02 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.43 Total: 2.26 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.98 Total: -14.64 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.20 Total: -35.25 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.59 Total: -15.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.16 -8.85 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595591408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.052 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds