Wall clock time and date at job start Tue Mar 31 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00099 * 2 1 4 4 C 1.52999 * 109.46990 * 286.63199 * 3 2 1 5 5 O 1.42905 * 109.46962 * 66.53429 * 4 3 2 6 6 C 1.42900 * 113.99665 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46931 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99601 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99874 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00029 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47442 * 60.00056 * 11 9 7 13 13 H 1.48498 * 109.47142 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47033 * 299.99981 * 11 9 7 15 15 C 1.46907 * 110.99652 * 123.95301 * 2 1 3 16 16 H 1.08999 * 109.47258 * 50.64208 * 15 2 1 17 17 C 1.53002 * 109.46972 * 290.63885 * 15 2 1 18 18 O 1.42898 * 109.46875 * 292.63675 * 17 15 2 19 19 C 1.52995 * 109.46860 * 170.63916 * 15 2 1 20 20 C 1.50699 * 109.47373 * 294.27364 * 19 15 2 21 21 C 1.38238 * 120.00405 * 88.01865 * 20 19 15 22 22 C 1.38235 * 120.00463 * 180.02562 * 21 20 19 23 23 C 1.38237 * 119.99687 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99943 * 0.25647 * 23 22 21 25 25 C 1.38233 * 120.00106 * 359.48761 * 24 23 22 26 26 H 1.09004 * 109.47073 * 305.63647 * 1 2 3 27 27 H 1.08997 * 109.46883 * 65.63292 * 1 2 3 28 28 H 1.08996 * 109.47119 * 185.63479 * 1 2 3 29 29 H 1.08998 * 109.47169 * 46.63443 * 3 2 1 30 30 H 1.09001 * 109.47114 * 166.63578 * 3 2 1 31 31 H 1.08998 * 109.47002 * 186.53240 * 4 3 2 32 32 H 1.08997 * 109.47440 * 306.53446 * 4 3 2 33 33 H 1.09005 * 109.46928 * 299.99089 * 6 5 4 34 34 H 1.08999 * 109.47660 * 59.99559 * 6 5 4 35 35 H 0.97006 * 119.99857 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47313 * 52.64198 * 17 15 2 37 37 H 1.08996 * 109.46682 * 172.64063 * 17 15 2 38 38 H 0.96703 * 113.99879 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.47613 * 174.27304 * 19 15 2 40 40 H 1.09007 * 109.47385 * 54.27223 * 19 15 2 41 41 H 1.08008 * 119.99480 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.00010 * 179.97438 * 22 21 20 43 43 H 1.07996 * 119.99609 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.99515 * 179.72079 * 24 23 22 45 45 H 1.08001 * 119.99940 * 180.22955 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7928 1.9955 -1.3822 5 8 0.3951 2.1603 -1.6300 6 6 0.0947 2.7383 -2.9019 7 6 -1.3992 2.8644 -3.0560 8 1 -2.0536 2.5356 -2.2623 9 6 -1.9304 3.3995 -4.2103 10 7 -1.1335 3.8004 -5.1766 11 14 -3.7820 3.5552 -4.4017 12 1 -4.3199 4.4230 -3.3234 13 1 -4.0942 4.1571 -5.7228 14 1 -4.4038 2.2097 -4.3108 15 6 1.9954 -0.7660 1.1377 16 1 1.5172 -1.7450 1.1690 17 6 1.7035 -0.0139 2.4377 18 8 2.4669 1.1936 2.4711 19 6 3.5069 -0.9417 0.9785 20 6 3.7886 -1.8023 -0.2261 21 6 3.9182 -1.2229 -1.4745 22 6 4.1761 -2.0123 -2.5796 23 6 4.3037 -3.3813 -2.4364 24 6 4.1683 -3.9613 -1.1889 25 6 3.9157 -3.1713 -0.0831 26 1 -0.3633 0.5988 0.8352 27 1 -0.3633 0.4240 -0.9361 28 1 -0.3633 -1.0227 0.1009 29 1 1.4670 1.9635 0.7471 30 1 3.0592 1.3523 0.2375 31 1 2.2852 2.9673 -1.4177 32 1 2.2221 1.3426 -2.1421 33 1 0.5518 3.7255 -2.9694 34 1 0.4887 2.1005 -3.6932 35 1 -1.5072 4.1766 -5.9889 36 1 0.6415 0.2261 2.4879 37 1 1.9752 -0.6393 3.2880 38 1 2.3311 1.7228 3.2690 39 1 3.9130 -1.4201 1.8697 40 1 3.9741 0.0341 0.8451 41 1 3.8181 -0.1533 -1.5864 42 1 4.2769 -1.5596 -3.5549 43 1 4.5048 -3.9981 -3.2998 44 1 4.2636 -5.0314 -1.0778 45 1 3.8136 -3.6241 0.8921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595591408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:09 Heat of formation + Delta-G solvation = -89.507334 kcal Electronic energy + Delta-G solvation = -24262.193908 eV Core-core repulsion = 20857.845139 eV Total energy + Delta-G solvation = -3404.348768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69858 -39.42886 -38.31771 -36.41024 -34.92537 -33.86496 -31.68532 -31.36591 -29.97881 -28.99183 -26.82169 -25.87314 -24.41073 -23.34553 -23.29335 -22.19672 -20.45292 -18.67652 -18.36225 -17.69477 -17.36513 -17.18161 -16.52980 -16.37943 -16.00920 -15.90261 -15.43782 -15.27099 -14.85069 -14.74854 -14.21199 -14.05646 -13.79504 -13.62032 -13.49812 -13.30671 -13.01858 -12.95083 -12.67939 -12.63047 -12.45206 -12.27886 -12.25850 -11.97165 -11.72898 -11.63169 -11.49880 -11.20940 -10.82305 -10.79388 -10.13543 -9.67753 -9.42642 -9.01302 -8.30776 -6.43178 0.59955 0.65897 1.39067 1.44098 1.52367 2.34826 3.01178 3.02161 3.02975 3.25846 3.53427 3.88687 4.08608 4.12653 4.22794 4.29070 4.34670 4.38079 4.44098 4.50347 4.53224 4.58707 4.65270 4.67087 4.74733 4.78598 4.83621 4.91925 4.96053 5.04877 5.09780 5.18448 5.25004 5.32023 5.36710 5.48402 5.55623 5.69935 5.76450 5.90163 5.98172 6.21454 6.27540 6.37506 6.56650 6.84795 6.92219 7.28786 8.81568 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.004010 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.373467 B = 6980.538290 C = 8046.625442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.532 5.532 3 C 0.089 3.911 4 C 0.055 3.945 5 O -0.394 6.394 6 C 0.211 3.789 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.265 1.265 15 C 0.087 3.913 16 H 0.098 0.902 17 C 0.048 3.952 18 O -0.578 6.578 19 C -0.061 4.061 20 C -0.075 4.075 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.034 0.966 33 H -0.020 1.020 34 H -0.021 1.021 35 H 0.270 0.730 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.390 0.610 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.717 -13.695 16.029 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.255 5.255 3 C -0.039 4.039 4 C -0.022 4.022 5 O -0.314 6.314 6 C 0.135 3.865 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.190 1.190 15 C -0.021 4.021 16 H 0.116 0.884 17 C -0.031 4.031 18 O -0.386 6.386 19 C -0.098 4.098 20 C -0.075 4.075 21 C -0.127 4.127 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.052 0.948 33 H -0.003 1.003 34 H -0.004 1.004 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.239 0.761 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.942 -14.119 14.979 23.312 hybrid contribution -1.063 1.185 0.245 1.610 sum 9.879 -12.935 15.223 22.286 Atomic orbital electron populations 1.22423 0.87454 1.00419 1.01438 1.62065 1.07725 1.13721 1.42038 1.22039 1.00909 0.88223 0.92720 1.22701 0.83341 0.97831 0.98369 1.87843 1.23195 1.82836 1.37489 1.19748 0.95811 0.90238 0.80656 1.21333 0.91768 1.42145 1.02860 0.91926 1.25967 1.04476 0.94199 0.94614 1.70080 1.37540 1.42173 1.07355 0.85248 0.77497 0.79013 0.77731 1.18951 1.20077 1.19004 1.22007 0.95901 0.96918 0.87296 0.88393 1.22851 0.94559 0.86935 0.98738 1.86586 1.69169 1.35639 1.47185 1.20557 0.94440 0.99264 0.95576 1.19910 0.98287 0.94428 0.94870 1.21081 0.98915 0.99678 0.93073 1.21335 1.00882 0.94929 0.98791 1.21341 1.01033 0.94639 0.98504 1.21389 1.00032 1.00725 0.92522 1.21295 1.00558 0.92841 0.99745 0.96104 0.91964 0.91524 0.93726 0.88199 0.94433 0.94778 1.00256 1.00373 0.92137 0.94234 0.90940 0.76092 0.88780 0.91009 0.87665 0.86594 0.84992 0.84090 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 8.66 127.69 1.11 2.12 16 2 N -0.53 -15.93 3.99 -897.03 -3.58 -19.51 16 3 C 0.09 2.83 3.61 86.30 0.31 3.14 16 4 C 0.05 2.22 6.24 71.98 0.45 2.67 16 5 O -0.39 -19.73 7.43 -148.98 -1.11 -20.84 16 6 C 0.21 12.29 5.69 71.24 0.41 12.70 16 7 C -0.54 -32.99 9.43 25.60 0.24 -32.75 16 8 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 11 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 C 0.09 1.90 2.27 44.91 0.10 2.00 16 16 H 0.10 2.00 7.95 -2.39 -0.02 1.98 16 17 C 0.05 0.86 6.35 71.98 0.46 1.32 16 18 O -0.58 -10.66 9.40 -148.98 -1.40 -12.06 16 19 C -0.06 -1.24 4.44 29.85 0.13 -1.11 16 20 C -0.07 -1.77 4.99 -19.87 -0.10 -1.87 16 21 C -0.11 -3.06 9.24 22.27 0.21 -2.85 16 22 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 23 C -0.14 -3.12 10.05 22.27 0.22 -2.90 16 24 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 25 C -0.13 -2.54 9.69 22.27 0.22 -2.33 16 26 H 0.02 0.66 6.73 -2.39 -0.02 0.65 16 27 H 0.06 2.66 5.73 -2.39 -0.01 2.64 16 28 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 29 H 0.04 1.49 6.50 -2.39 -0.02 1.47 16 30 H 0.10 2.87 5.23 -2.39 -0.01 2.86 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.42 7.60 -2.39 -0.02 1.40 16 33 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 34 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 35 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 36 H 0.04 0.78 6.59 -2.39 -0.02 0.77 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.39 4.13 9.12 -74.06 -0.68 3.45 16 39 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 40 H 0.07 1.64 5.63 -2.38 -0.01 1.63 16 41 H 0.11 3.20 7.33 -2.91 -0.02 3.18 16 42 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -71.12 356.51 1.18 -69.94 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.30 Total: 17.48 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.66 Total: -24.97 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -3.30 Total: -76.67 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -2.51 Total: -32.90 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.12 1.18 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595591408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.570 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds