Wall clock time and date at job start Tue Mar 31 2020 06:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00043 * 2 1 4 4 C 1.53003 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47200 * 175.00289 * 4 3 2 6 6 N 1.46903 * 109.46748 * 295.00473 * 4 3 2 7 7 C 1.46898 * 110.99673 * 274.99491 * 6 4 3 8 8 C 1.53006 * 109.47006 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47011 * 90.00204 * 14 12 10 16 16 H 1.48498 * 109.47112 * 210.00472 * 14 12 10 17 17 H 1.48499 * 109.47134 * 330.00583 * 14 12 10 18 18 C 1.50697 * 109.46664 * 54.99915 * 4 3 2 19 19 C 1.38292 * 119.97453 * 279.72664 * 18 4 3 20 20 C 1.38247 * 120.10938 * 179.73159 * 19 18 4 21 21 C 1.38168 * 120.05491 * 0.54200 * 20 19 18 22 22 C 1.38709 * 119.94412 * 359.73777 * 21 20 19 23 23 O 1.35899 * 120.05529 * 179.97438 * 22 21 20 24 24 C 1.42905 * 116.99816 * 0.02562 * 23 22 21 25 25 C 1.38128 * 119.96859 * 100.00617 * 18 4 3 26 26 H 1.08998 * 109.46859 * 59.99805 * 1 2 3 27 27 H 1.09000 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46812 * 299.99839 * 1 2 3 29 29 H 1.09002 * 109.47197 * 59.99970 * 3 2 1 30 30 H 1.08996 * 109.47531 * 300.00417 * 3 2 1 31 31 H 1.00897 * 110.99542 * 151.04632 * 6 4 3 32 32 H 1.09001 * 109.47392 * 60.00807 * 7 6 4 33 33 H 1.09001 * 109.47520 * 300.00529 * 7 6 4 34 34 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 35 35 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 36 36 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 37 37 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 38 38 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 39 39 H 1.07993 * 119.94218 * 359.97438 * 19 18 4 40 40 H 1.07992 * 119.97000 * 180.25772 * 20 19 18 41 41 H 1.07998 * 120.02724 * 179.70809 * 21 20 19 42 42 H 1.09006 * 109.47228 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47123 * 299.99917 * 24 23 22 44 44 H 1.08999 * 109.47406 * 60.00146 * 24 23 22 45 45 H 1.07995 * 120.02712 * 0.02562 * 25 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9779 0.5622 1.2543 7 6 4.1208 1.5655 2.3177 8 6 4.5824 0.8811 3.6059 9 6 4.7307 1.9259 4.7137 10 6 5.1848 1.2516 5.9826 11 1 5.3514 0.1847 5.9974 12 6 5.3885 1.9971 7.1246 13 7 5.1861 3.2964 7.1065 14 14 5.9521 1.1614 8.6973 15 1 7.4362 1.1428 8.7435 16 1 5.4296 1.9086 9.8695 17 1 5.4385 -0.2316 8.7291 18 6 3.9714 0.3329 -1.1648 19 6 3.9019 -1.0455 -1.0767 20 6 4.2958 -1.8295 -2.1450 21 6 4.7705 -1.2377 -3.2997 22 6 4.8467 0.1445 -3.3885 23 8 5.3138 0.7290 -4.5230 24 6 5.7087 -0.1410 -5.5857 25 6 4.4454 0.9294 -2.3170 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 4.8378 0.0516 1.1210 32 1 3.1609 2.0529 2.4888 33 1 4.8581 2.3103 2.0180 34 1 3.8453 0.1362 3.9058 35 1 5.5423 0.3940 3.4346 36 1 5.4675 2.6711 4.4141 37 1 3.7705 2.4127 4.8849 38 1 5.3290 3.8208 7.9099 39 1 3.5356 -1.5100 -0.1732 40 1 4.2366 -2.9055 -2.0753 41 1 5.0826 -1.8507 -4.1323 42 1 6.0605 0.4526 -6.4295 43 1 6.5104 -0.7944 -5.2414 44 1 4.8563 -0.7447 -5.8969 45 1 4.5041 2.0057 -2.3835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595683714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:04 Heat of formation + Delta-G solvation = -67.711274 kcal Electronic energy + Delta-G solvation = -23100.113970 eV Core-core repulsion = 19696.710350 eV Total energy + Delta-G solvation = -3403.403620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33919 -38.68200 -37.18559 -36.00977 -33.72920 -32.12130 -30.86148 -29.82002 -28.53120 -27.48056 -26.33211 -25.57469 -23.43434 -22.56466 -22.00467 -20.44613 -20.01253 -17.92550 -16.67213 -16.28340 -16.16106 -15.99480 -15.92424 -15.82516 -15.27563 -14.75163 -14.47084 -14.40360 -14.02086 -13.64593 -13.32568 -13.06183 -12.78386 -12.46338 -12.26059 -12.18255 -11.90190 -11.68397 -11.47355 -11.31424 -11.16870 -11.10200 -10.82233 -10.70042 -10.50963 -10.45428 -9.66457 -9.52981 -9.30712 -9.04265 -8.88955 -8.30872 -8.23416 -8.12750 -5.96237 -3.97911 1.22071 1.44324 3.06802 3.34805 3.40755 3.44855 3.68005 3.90091 4.37136 4.51375 4.58784 4.67011 4.86347 4.88124 4.97616 5.15013 5.16693 5.25006 5.36073 5.39639 5.40197 5.43545 5.49307 5.51663 5.60607 5.70145 5.72275 5.82922 5.91913 5.96448 6.20174 6.36605 6.44850 6.59677 6.70382 6.77083 6.82902 7.18466 7.23226 7.26499 7.42933 7.66070 7.72890 7.88151 8.04652 8.48216 9.09398 9.65842 11.15284 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.002797 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.780623 B =10007.240218 C =10673.148689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.079 3.921 4 C 0.127 3.873 5 H 0.066 0.934 6 N -0.674 5.674 7 C 0.058 3.942 8 C -0.105 4.105 9 C 0.022 3.978 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.045 4.045 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.210 4.210 22 C 0.117 3.883 23 O -0.321 6.321 24 C 0.029 3.971 25 C -0.148 4.148 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.342 0.658 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 -7.120 -25.008 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.001 3.999 4 C 0.017 3.983 5 H 0.083 0.917 6 N -0.305 5.305 7 C -0.071 4.071 8 C -0.143 4.143 9 C -0.015 4.015 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.045 4.045 19 C -0.129 4.129 20 C -0.106 4.106 21 C -0.228 4.228 22 C 0.073 3.927 23 O -0.235 6.235 24 C -0.066 4.066 25 C -0.167 4.167 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.994 -7.105 -24.744 26.223 hybrid contribution 0.927 0.126 0.467 1.046 sum -4.067 -6.979 -24.277 25.585 Atomic orbital electron populations 1.22688 0.82109 1.02326 0.99432 1.87978 1.18417 1.26925 1.95186 1.22485 0.92456 0.85295 0.99664 1.20517 0.93986 0.95708 0.88040 0.91661 1.60613 1.37773 1.27604 1.04553 1.22217 0.99986 0.92956 0.91904 1.21600 0.99576 0.99739 0.93421 1.19064 0.96955 0.93608 0.91919 1.21266 1.44846 0.94222 0.95221 0.92664 1.25035 0.95706 0.94845 0.98990 1.69968 1.49680 1.05357 1.28687 0.86598 0.78839 0.79579 0.83017 1.20721 1.21271 1.19851 1.19601 0.96705 0.94418 0.93809 1.21059 0.99555 0.92828 0.99427 1.20979 0.97202 0.99831 0.92622 1.21196 1.07880 0.93340 1.00419 1.18886 0.95837 0.91377 0.86642 1.86054 1.78654 1.35906 1.22855 1.23012 0.99551 0.95220 0.88824 1.20268 1.04567 0.99797 0.92046 0.94876 0.89998 0.94216 0.92636 0.93675 0.83885 0.91552 0.95686 0.92467 0.93635 0.96845 0.96634 0.93078 0.84295 0.85922 0.85941 0.88441 0.92742 0.92817 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -4.90 9.11 -35.23 -0.32 -5.22 16 3 C 0.08 0.99 5.68 37.16 0.21 1.20 16 4 C 0.13 1.66 2.65 -68.86 -0.18 1.48 16 5 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 6 N -0.67 -10.05 5.63 -107.95 -0.61 -10.65 16 7 C 0.06 1.00 5.48 -3.82 -0.02 0.98 16 8 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 18 C -0.04 -0.56 4.59 -104.64 -0.48 -1.04 16 19 C -0.11 -1.36 8.00 -39.56 -0.32 -1.68 16 20 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 21 C -0.21 -2.20 9.04 -39.43 -0.36 -2.55 16 22 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 23 O -0.32 -3.52 10.50 -19.42 -0.20 -3.72 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C -0.15 -1.80 9.61 -39.43 -0.38 -2.18 16 26 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.73 7.36 -51.93 -0.38 0.34 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.34 4.98 7.98 -39.29 -0.31 4.66 16 32 H 0.07 1.16 7.36 -51.93 -0.38 0.78 16 33 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.14 1.83 7.47 -52.49 -0.39 1.43 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 44 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 45 H 0.13 1.42 8.03 -52.49 -0.42 1.00 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -32.09 369.87 -8.22 -40.31 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.60 Total: 0.40 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.77 Total: -17.05 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.13 Total: -37.27 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.52 Total: -8.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.09 -8.22 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595683714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds