Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00043 * 2 1 4 4 C 1.53003 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47200 * 175.00289 * 4 3 2 6 6 N 1.46903 * 109.46748 * 295.00473 * 4 3 2 7 7 C 1.46898 * 110.99673 * 274.99491 * 6 4 3 8 8 C 1.53006 * 109.47006 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47011 * 90.00204 * 14 12 10 16 16 H 1.48498 * 109.47112 * 210.00472 * 14 12 10 17 17 H 1.48499 * 109.47134 * 330.00583 * 14 12 10 18 18 C 1.50697 * 109.46664 * 54.99915 * 4 3 2 19 19 C 1.38292 * 119.97453 * 279.72664 * 18 4 3 20 20 C 1.38247 * 120.10938 * 179.73159 * 19 18 4 21 21 C 1.38168 * 120.05491 * 0.54200 * 20 19 18 22 22 C 1.38709 * 119.94412 * 359.73777 * 21 20 19 23 23 O 1.35899 * 120.05529 * 179.97438 * 22 21 20 24 24 C 1.42905 * 116.99816 * 0.02562 * 23 22 21 25 25 C 1.38128 * 119.96859 * 100.00617 * 18 4 3 26 26 H 1.08998 * 109.46859 * 59.99805 * 1 2 3 27 27 H 1.09000 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46812 * 299.99839 * 1 2 3 29 29 H 1.09002 * 109.47197 * 59.99970 * 3 2 1 30 30 H 1.08996 * 109.47531 * 300.00417 * 3 2 1 31 31 H 1.00897 * 110.99542 * 151.04632 * 6 4 3 32 32 H 1.09001 * 109.47392 * 60.00807 * 7 6 4 33 33 H 1.09001 * 109.47520 * 300.00529 * 7 6 4 34 34 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 35 35 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 36 36 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 37 37 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 38 38 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 39 39 H 1.07993 * 119.94218 * 359.97438 * 19 18 4 40 40 H 1.07992 * 119.97000 * 180.25772 * 20 19 18 41 41 H 1.07998 * 120.02724 * 179.70809 * 21 20 19 42 42 H 1.09006 * 109.47228 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47123 * 299.99917 * 24 23 22 44 44 H 1.08999 * 109.47406 * 60.00146 * 24 23 22 45 45 H 1.07995 * 120.02712 * 0.02562 * 25 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9779 0.5622 1.2543 7 6 4.1208 1.5655 2.3177 8 6 4.5824 0.8811 3.6059 9 6 4.7307 1.9259 4.7137 10 6 5.1848 1.2516 5.9826 11 1 5.3514 0.1847 5.9974 12 6 5.3885 1.9971 7.1246 13 7 5.1861 3.2964 7.1065 14 14 5.9521 1.1614 8.6973 15 1 7.4362 1.1428 8.7435 16 1 5.4296 1.9086 9.8695 17 1 5.4385 -0.2316 8.7291 18 6 3.9714 0.3329 -1.1648 19 6 3.9019 -1.0455 -1.0767 20 6 4.2958 -1.8295 -2.1450 21 6 4.7705 -1.2377 -3.2997 22 6 4.8467 0.1445 -3.3885 23 8 5.3138 0.7290 -4.5230 24 6 5.7087 -0.1410 -5.5857 25 6 4.4454 0.9294 -2.3170 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 4.8378 0.0516 1.1210 32 1 3.1609 2.0529 2.4888 33 1 4.8581 2.3103 2.0180 34 1 3.8453 0.1362 3.9058 35 1 5.5423 0.3940 3.4346 36 1 5.4675 2.6711 4.4141 37 1 3.7705 2.4127 4.8849 38 1 5.3290 3.8208 7.9099 39 1 3.5356 -1.5100 -0.1732 40 1 4.2366 -2.9055 -2.0753 41 1 5.0826 -1.8507 -4.1323 42 1 6.0605 0.4526 -6.4295 43 1 6.5104 -0.7944 -5.2414 44 1 4.8563 -0.7447 -5.8969 45 1 4.5041 2.0057 -2.3835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595683714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = -87.856541 kcal Electronic energy + Delta-G solvation = -23100.987535 eV Core-core repulsion = 19696.710350 eV Total energy + Delta-G solvation = -3404.277185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17551 -39.61935 -38.06521 -37.31082 -35.53820 -33.75633 -31.96841 -31.00695 -29.56332 -28.09733 -27.87218 -26.72604 -24.85744 -23.47221 -23.34935 -21.91797 -21.23647 -18.81582 -18.45063 -17.58766 -17.03363 -16.98822 -16.70350 -16.66604 -16.54864 -16.32962 -15.80435 -15.60268 -15.13982 -14.71066 -14.34118 -14.28077 -14.06963 -13.71783 -13.57604 -13.23758 -13.11951 -12.95905 -12.71361 -12.61956 -12.48689 -12.40546 -12.18142 -11.98225 -11.86676 -11.59868 -11.50816 -11.36257 -11.09245 -10.54419 -10.46816 -9.79230 -9.35892 -9.08169 -8.19421 -6.30092 0.35514 0.56747 1.40327 1.41856 1.53239 2.36812 2.41886 2.79078 2.98830 3.13664 3.21755 3.67762 3.92305 4.16190 4.19036 4.23821 4.28940 4.38155 4.40830 4.41133 4.52308 4.52651 4.57754 4.58805 4.65491 4.68197 4.73637 4.75306 4.83729 4.90989 4.99458 5.07161 5.13328 5.26392 5.36256 5.53011 5.57447 5.70162 5.77154 5.86082 5.87357 6.06204 6.27882 6.39800 6.45104 6.50568 6.86816 7.38918 8.92562 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.002797 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.780623 B =10007.240218 C =10673.148689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.386 6.386 3 C 0.079 3.921 4 C 0.128 3.872 5 H 0.070 0.930 6 N -0.672 5.672 7 C 0.072 3.928 8 C -0.090 4.090 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.059 0.941 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.264 1.264 18 C -0.051 4.051 19 C -0.122 4.122 20 C -0.088 4.088 21 C -0.207 4.207 22 C 0.110 3.890 23 O -0.339 6.339 24 C 0.019 3.981 25 C -0.162 4.162 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.345 0.655 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.051 0.949 35 H 0.049 0.951 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -8.669 -26.167 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.001 3.999 4 C 0.018 3.982 5 H 0.087 0.913 6 N -0.304 5.304 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.051 4.051 19 C -0.141 4.141 20 C -0.106 4.106 21 C -0.226 4.226 22 C 0.065 3.935 23 O -0.253 6.253 24 C -0.075 4.075 25 C -0.181 4.181 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.009 0.991 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.686 -8.667 -25.928 27.737 hybrid contribution 0.820 0.607 0.718 1.248 sum -3.866 -8.060 -25.210 26.748 Atomic orbital electron populations 1.22837 0.80766 1.03339 1.00026 1.87946 1.19978 1.27227 1.95315 1.22483 0.92123 0.85291 0.99956 1.20542 0.94393 0.95928 0.87287 0.91262 1.60530 1.37896 1.26909 1.05072 1.21909 0.99580 0.93008 0.91169 1.21338 0.99778 0.98146 0.93515 1.18963 0.94759 0.94200 0.93239 1.21703 1.45136 0.94637 0.96530 0.92313 1.25996 0.95604 0.95497 1.02855 1.70097 1.50495 1.06949 1.29907 0.85443 0.78647 0.78731 0.78216 1.19709 1.20666 1.18802 1.19500 0.97438 0.94481 0.93701 1.21036 1.00453 0.92891 0.99706 1.21242 0.96315 1.00909 0.92131 1.21479 1.06961 0.93127 1.01003 1.19042 0.95674 0.91928 0.86877 1.86034 1.78577 1.37428 1.23298 1.23318 1.00331 0.95606 0.88240 1.20368 1.05155 1.00184 0.92419 0.93476 0.88843 0.94388 0.93553 0.92096 0.83587 0.91910 0.95661 0.92997 0.93200 0.99059 0.99024 0.92780 0.85447 0.83742 0.83388 0.86508 0.91829 0.91676 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.39 -10.10 9.11 -148.98 -1.36 -11.46 16 3 C 0.08 1.96 5.68 71.98 0.41 2.37 16 4 C 0.13 3.30 2.65 44.17 0.12 3.42 16 5 H 0.07 1.72 7.66 -2.39 -0.02 1.71 16 6 N -0.67 -19.99 5.63 -495.44 -2.79 -22.78 16 7 C 0.07 2.53 5.48 86.31 0.47 3.01 16 8 C -0.09 -3.82 5.41 30.60 0.17 -3.65 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 12 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 13 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 14 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 C -0.05 -1.24 4.59 -19.88 -0.09 -1.34 16 19 C -0.12 -2.91 8.00 22.28 0.18 -2.74 16 20 C -0.09 -1.74 10.04 22.26 0.22 -1.51 16 21 C -0.21 -3.88 9.04 22.37 0.20 -3.68 16 22 C 0.11 2.42 6.69 22.51 0.15 2.57 16 23 O -0.34 -6.91 10.50 -92.42 -0.97 -7.88 16 24 C 0.02 0.21 9.81 113.37 1.11 1.33 16 25 C -0.16 -3.85 9.61 22.37 0.21 -3.64 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 1.22 7.36 -2.39 -0.02 1.20 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.35 9.95 7.98 -89.70 -0.72 9.23 16 32 H 0.06 2.24 7.36 -2.39 -0.02 2.23 16 33 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.13 3.31 7.47 -2.91 -0.02 3.28 16 40 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 42 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 44 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 45 H 0.13 2.86 8.03 -2.91 -0.02 2.84 16 Total: -1.00 -68.88 369.87 2.68 -66.19 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.24 Total: 17.96 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 5.25 Total: -31.62 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.51 Total: -80.30 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -2.33 Total: -19.34 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.88 2.68 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595683714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.662 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds