Wall clock time and date at job start Tue Mar 31 2020 07:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46732 * 274.34502 * 3 2 1 5 5 H 1.48495 * 109.47420 * 34.33921 * 3 2 1 6 6 H 1.48493 * 109.47169 * 154.34659 * 3 2 1 7 7 C 1.38807 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00228 * 162.60591 * 7 2 1 9 9 N 1.36942 * 119.99815 * 342.60060 * 7 2 1 10 10 C 1.46929 * 120.62731 * 152.28887 * 9 7 2 11 11 C 1.53189 * 108.77616 * 126.41659 * 10 9 7 12 12 C 1.53033 * 109.34312 * 54.61586 * 11 10 9 13 13 N 1.46497 * 109.46266 * 178.63362 * 12 11 10 14 14 C 1.34772 * 120.00181 * 204.99989 * 13 12 11 15 15 O 1.21589 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00651 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00565 * 180.02562 * 16 14 13 18 18 C 1.52996 * 119.29310 * 250.51802 * 17 16 14 19 19 C 1.52995 * 60.37905 * 248.69009 * 18 17 16 20 20 H 1.09005 * 119.75016 * 111.11884 * 19 18 17 21 21 C 1.54257 * 118.20245 * 266.38550 * 19 18 17 22 22 C 1.54894 * 104.19617 * 87.78882 * 21 19 18 23 23 C 1.54264 * 117.41379 * 46.17127 * 17 16 14 24 24 C 1.53043 * 109.53844 * 298.68190 * 12 11 10 25 25 C 1.46926 * 120.63262 * 332.30895 * 9 7 2 26 26 H 0.96997 * 120.00105 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.58656 * 6.62252 * 10 9 7 28 28 H 1.09005 * 109.69851 * 246.27041 * 10 9 7 29 29 H 1.09001 * 109.49772 * 174.58747 * 11 10 9 30 30 H 1.09004 * 109.49446 * 294.64440 * 11 10 9 31 31 H 1.09003 * 109.46461 * 58.66852 * 12 11 10 32 32 H 0.96995 * 120.00168 * 24.99663 * 13 12 11 33 33 H 0.97006 * 119.99155 * 359.97438 * 16 14 13 34 34 H 1.08999 * 117.46320 * 356.29181 * 18 17 16 35 35 H 1.09005 * 117.45626 * 141.09460 * 18 17 16 36 36 H 1.08998 * 110.48528 * 206.46452 * 21 19 18 37 37 H 1.08999 * 110.48652 * 328.97866 * 21 19 18 38 38 H 1.08998 * 110.75648 * 80.36870 * 22 21 19 39 39 H 1.09000 * 110.75511 * 203.74377 * 22 21 19 40 40 H 1.09003 * 110.48607 * 235.05165 * 23 17 16 41 41 H 1.08997 * 110.48303 * 357.69453 * 23 17 16 42 42 H 1.09000 * 109.47628 * 301.36776 * 24 12 11 43 43 H 1.08995 * 109.52320 * 181.29521 * 24 12 11 44 44 H 1.08994 * 109.58676 * 353.37057 * 25 9 7 45 45 H 1.08995 * 109.58459 * 113.65855 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4058 2.0994 -1.3961 5 1 1.4966 2.6245 0.7897 6 1 3.5906 1.4154 0.6061 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2236 -0.2790 9 7 1.3725 -2.3607 0.3557 10 6 1.8188 -3.6548 -0.1782 11 6 2.0746 -4.6094 0.9922 12 6 0.8201 -4.6886 1.8652 13 7 1.0507 -5.6259 2.9672 14 6 0.0078 -6.2456 3.5542 15 8 -1.1246 -6.0263 3.1695 16 7 0.2198 -7.1083 4.5677 17 6 -0.9139 -7.7823 5.2054 18 6 -1.3112 -7.3927 6.6306 19 6 -0.7069 -8.7728 6.3647 20 1 0.2899 -9.0079 6.7381 21 6 -1.6676 -9.9531 6.1127 22 6 -1.9251 -9.9140 4.5858 23 6 -1.9828 -8.4021 4.2818 24 6 0.5025 -3.3029 2.4318 25 6 0.2287 -2.3334 1.2775 26 1 -0.4850 0.8400 -0.0004 27 1 2.7390 -3.5180 -0.7461 28 1 1.0475 -4.0704 -0.8268 29 1 2.3134 -5.6009 0.6076 30 1 2.9094 -4.2394 1.5876 31 1 -0.0198 -5.0356 1.2633 32 1 1.9540 -5.8006 3.2743 33 1 1.1233 -7.2835 4.8744 34 1 -0.6873 -6.6612 7.1442 35 1 -2.3757 -7.3459 6.8606 36 1 -1.1976 -10.8947 6.3963 37 1 -2.5982 -9.8114 6.6622 38 1 -1.1009 -10.3768 4.0431 39 1 -2.8705 -10.3981 4.3410 40 1 -2.9714 -8.0154 4.5294 41 1 -1.7452 -8.2037 3.2367 42 1 1.3516 -2.9449 3.0139 43 1 -0.3776 -3.3641 3.0719 44 1 0.0999 -1.3249 1.6702 45 1 -0.6743 -2.6377 0.7484 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596275621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:44 Heat of formation + Delta-G solvation = 13.498281 kcal Electronic energy + Delta-G solvation = -23986.242801 eV Core-core repulsion = 20618.653442 eV Total energy + Delta-G solvation = -3367.589359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50270 -39.06982 -37.24993 -34.30033 -33.70292 -32.04217 -31.39333 -29.94990 -29.33804 -27.89093 -24.97501 -22.96609 -22.30185 -22.16070 -21.10217 -20.31204 -19.69059 -19.18373 -17.93379 -16.97251 -16.54766 -15.51267 -15.21753 -14.78394 -14.68176 -14.11660 -13.80098 -13.70813 -13.45989 -13.38347 -13.14762 -12.96068 -12.65466 -12.32878 -12.08484 -11.46328 -11.31609 -11.21975 -11.12655 -11.08239 -10.90971 -10.84326 -10.69323 -10.34579 -10.23688 -10.14192 -10.02514 -9.79692 -9.71589 -9.48092 -8.87551 -8.55111 -8.34351 -6.65836 -5.75883 -3.18273 2.73036 3.24217 3.38983 3.46208 3.48382 3.56307 4.22730 4.30491 4.43849 4.51699 4.64233 4.88406 5.10161 5.19953 5.32611 5.36151 5.40584 5.44552 5.49726 5.59814 5.62036 5.62885 5.69349 5.81439 5.88310 5.95416 6.11832 6.13406 6.15819 6.27733 6.40700 6.50309 6.61433 6.65518 6.69053 6.81475 6.95028 6.99546 7.15568 7.43271 7.72612 7.82240 8.21090 8.47731 8.84339 9.23718 9.87355 10.44028 11.32655 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.002962 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.846217 B = 9452.118725 C = 9629.473943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.170 3.830 13 N -0.741 5.741 14 C 0.704 3.296 15 O -0.580 6.580 16 N -0.717 5.717 17 C 0.121 3.879 18 C -0.157 4.157 19 C -0.168 4.168 20 H 0.110 0.890 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.083 4.083 24 C -0.146 4.146 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.058 0.942 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.389 0.611 33 H 0.394 0.606 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -19.594 12.546 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.066 3.934 13 N -0.394 5.394 14 C 0.405 3.595 15 O -0.457 6.457 16 N -0.372 5.372 17 C 0.032 3.968 18 C -0.196 4.196 19 C -0.187 4.187 20 H 0.128 0.872 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.122 4.122 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.221 0.779 33 H 0.227 0.773 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.621 -19.210 12.109 22.717 hybrid contribution 1.445 0.795 0.476 1.716 sum 0.824 -18.415 12.585 22.320 Atomic orbital electron populations 1.70042 1.05267 1.25505 1.53669 1.25049 0.95262 0.98434 1.00926 0.86304 0.79187 0.83820 0.77594 1.21464 1.21571 1.20477 1.19165 0.92683 0.84891 1.41621 0.91679 1.44116 1.35970 1.01350 1.50124 1.20829 0.97952 0.86748 0.92302 1.22341 0.96802 0.99644 0.99053 1.20891 0.98473 0.88244 0.85802 1.45535 1.07710 1.47532 1.38628 1.15947 0.85346 0.78673 0.79571 1.90924 1.21225 1.67422 1.66149 1.44364 1.08282 1.47167 1.37354 1.21225 0.90442 0.98281 0.86824 1.23579 1.01934 0.96082 0.98024 1.23712 1.01130 0.90747 1.03126 0.87153 1.21961 0.98421 0.96498 0.96325 1.22631 1.01767 0.96542 0.95341 1.21892 0.97073 0.93068 1.00123 1.22570 1.00413 0.95243 1.00444 1.20758 0.88618 0.98204 0.87682 0.93603 0.92394 0.96194 0.92710 0.91961 0.90094 0.77853 0.77250 0.88275 0.88363 0.91180 0.91095 0.91493 0.90998 0.90801 0.89673 0.92889 0.92815 0.89329 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.99 3.00 -172.32 -0.52 -15.50 16 10 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 11 C -0.14 -2.33 5.55 -26.62 -0.15 -2.48 16 12 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 13 N -0.74 -10.74 5.08 -58.64 -0.30 -11.04 16 14 C 0.70 11.00 8.23 -86.92 -0.72 10.29 16 15 O -0.58 -11.49 14.20 5.29 0.08 -11.42 16 16 N -0.72 -8.39 5.67 -51.37 -0.29 -8.69 16 17 C 0.12 1.35 2.99 -130.70 -0.39 0.96 16 18 C -0.16 -1.52 10.06 -26.74 -0.27 -1.79 16 19 C -0.17 -1.39 6.94 -89.51 -0.62 -2.01 16 20 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.09 -0.69 6.63 -25.07 -0.17 -0.85 16 22 C -0.13 -1.06 6.88 -25.04 -0.17 -1.23 16 23 C -0.08 -0.97 5.62 -25.37 -0.14 -1.11 16 24 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 25 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 32 H 0.39 4.42 8.62 -40.82 -0.35 4.06 16 33 H 0.39 3.42 8.84 -40.82 -0.36 3.06 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.22 6.71 -51.93 -0.35 0.87 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -32.33 353.23 -10.98 -43.31 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.65 Total: 5.53 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.21 Total: 1.68 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.48 Total: -61.19 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.33 -10.98 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.807 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds