Wall clock time and date at job start Tue Mar 31 2020 07:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46732 * 274.34502 * 3 2 1 5 5 H 1.48495 * 109.47420 * 34.33921 * 3 2 1 6 6 H 1.48493 * 109.47169 * 154.34659 * 3 2 1 7 7 C 1.38807 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00228 * 162.60591 * 7 2 1 9 9 N 1.36942 * 119.99815 * 342.60060 * 7 2 1 10 10 C 1.46929 * 120.62731 * 152.28887 * 9 7 2 11 11 C 1.53189 * 108.77616 * 126.41659 * 10 9 7 12 12 C 1.53033 * 109.34312 * 54.61586 * 11 10 9 13 13 N 1.46497 * 109.46266 * 178.63362 * 12 11 10 14 14 C 1.34772 * 120.00181 * 204.99989 * 13 12 11 15 15 O 1.21589 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00651 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00565 * 180.02562 * 16 14 13 18 18 C 1.52996 * 119.29310 * 250.51802 * 17 16 14 19 19 C 1.52995 * 60.37905 * 248.69009 * 18 17 16 20 20 H 1.09005 * 119.75016 * 111.11884 * 19 18 17 21 21 C 1.54257 * 118.20245 * 266.38550 * 19 18 17 22 22 C 1.54894 * 104.19617 * 87.78882 * 21 19 18 23 23 C 1.54264 * 117.41379 * 46.17127 * 17 16 14 24 24 C 1.53043 * 109.53844 * 298.68190 * 12 11 10 25 25 C 1.46926 * 120.63262 * 332.30895 * 9 7 2 26 26 H 0.96997 * 120.00105 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.58656 * 6.62252 * 10 9 7 28 28 H 1.09005 * 109.69851 * 246.27041 * 10 9 7 29 29 H 1.09001 * 109.49772 * 174.58747 * 11 10 9 30 30 H 1.09004 * 109.49446 * 294.64440 * 11 10 9 31 31 H 1.09003 * 109.46461 * 58.66852 * 12 11 10 32 32 H 0.96995 * 120.00168 * 24.99663 * 13 12 11 33 33 H 0.97006 * 119.99155 * 359.97438 * 16 14 13 34 34 H 1.08999 * 117.46320 * 356.29181 * 18 17 16 35 35 H 1.09005 * 117.45626 * 141.09460 * 18 17 16 36 36 H 1.08998 * 110.48528 * 206.46452 * 21 19 18 37 37 H 1.08999 * 110.48652 * 328.97866 * 21 19 18 38 38 H 1.08998 * 110.75648 * 80.36870 * 22 21 19 39 39 H 1.09000 * 110.75511 * 203.74377 * 22 21 19 40 40 H 1.09003 * 110.48607 * 235.05165 * 23 17 16 41 41 H 1.08997 * 110.48303 * 357.69453 * 23 17 16 42 42 H 1.09000 * 109.47628 * 301.36776 * 24 12 11 43 43 H 1.08995 * 109.52320 * 181.29521 * 24 12 11 44 44 H 1.08994 * 109.58676 * 353.37057 * 25 9 7 45 45 H 1.08995 * 109.58459 * 113.65855 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4058 2.0994 -1.3961 5 1 1.4966 2.6245 0.7897 6 1 3.5906 1.4154 0.6061 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2236 -0.2790 9 7 1.3725 -2.3607 0.3557 10 6 1.8188 -3.6548 -0.1782 11 6 2.0746 -4.6094 0.9922 12 6 0.8201 -4.6886 1.8652 13 7 1.0507 -5.6259 2.9672 14 6 0.0078 -6.2456 3.5542 15 8 -1.1246 -6.0263 3.1695 16 7 0.2198 -7.1083 4.5677 17 6 -0.9139 -7.7823 5.2054 18 6 -1.3112 -7.3927 6.6306 19 6 -0.7069 -8.7728 6.3647 20 1 0.2899 -9.0079 6.7381 21 6 -1.6676 -9.9531 6.1127 22 6 -1.9251 -9.9140 4.5858 23 6 -1.9828 -8.4021 4.2818 24 6 0.5025 -3.3029 2.4318 25 6 0.2287 -2.3334 1.2775 26 1 -0.4850 0.8400 -0.0004 27 1 2.7390 -3.5180 -0.7461 28 1 1.0475 -4.0704 -0.8268 29 1 2.3134 -5.6009 0.6076 30 1 2.9094 -4.2394 1.5876 31 1 -0.0198 -5.0356 1.2633 32 1 1.9540 -5.8006 3.2743 33 1 1.1233 -7.2835 4.8744 34 1 -0.6873 -6.6612 7.1442 35 1 -2.3757 -7.3459 6.8606 36 1 -1.1976 -10.8947 6.3963 37 1 -2.5982 -9.8114 6.6622 38 1 -1.1009 -10.3768 4.0431 39 1 -2.8705 -10.3981 4.3410 40 1 -2.9714 -8.0154 4.5294 41 1 -1.7452 -8.2037 3.2367 42 1 1.3516 -2.9449 3.0139 43 1 -0.3776 -3.3641 3.0719 44 1 0.0999 -1.3249 1.6702 45 1 -0.6743 -2.6377 0.7484 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:43 Heat of formation + Delta-G solvation = -7.934605 kcal Electronic energy + Delta-G solvation = -23987.172201 eV Core-core repulsion = 20618.653442 eV Total energy + Delta-G solvation = -3368.518758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52517 -40.18925 -38.84282 -35.94816 -34.82222 -33.71876 -32.32666 -31.67633 -31.01059 -28.70996 -26.87147 -24.15840 -23.89114 -23.44729 -22.31178 -21.26453 -21.01829 -20.38982 -19.19515 -18.65115 -17.72006 -16.93815 -16.51402 -16.27525 -15.74458 -15.70130 -15.35719 -15.15048 -14.77143 -14.58188 -14.38873 -14.13498 -14.00444 -13.87935 -13.18929 -13.04347 -12.91443 -12.67198 -12.55284 -12.12346 -12.11715 -12.01820 -11.91405 -11.87039 -11.81541 -11.66944 -11.52338 -11.36577 -11.19892 -10.73911 -10.58070 -10.08572 -9.55915 -8.72171 -7.87481 -5.33415 1.47005 1.48715 1.58958 1.63414 2.15605 2.51708 2.67890 3.20273 3.30246 3.52402 3.66772 3.71065 3.88215 3.89378 4.09997 4.25345 4.34445 4.37505 4.47691 4.51272 4.62326 4.65530 4.66956 4.79973 4.83556 4.88335 4.89184 5.02064 5.05281 5.08502 5.12984 5.20228 5.24263 5.26715 5.31699 5.45388 5.45837 5.61736 5.64175 5.69429 5.70064 6.04738 6.38304 7.12870 7.16998 7.66800 7.84191 8.37080 9.19771 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.002962 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.846217 B = 9452.118725 C = 9629.473943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.262 4.262 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.183 3.817 13 N -0.726 5.726 14 C 0.700 3.300 15 O -0.628 6.628 16 N -0.699 5.699 17 C 0.083 3.917 18 C -0.163 4.163 19 C -0.134 4.134 20 H 0.133 0.867 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.087 4.087 24 C -0.129 4.129 25 C 0.184 3.816 26 H 0.249 0.751 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.054 0.946 45 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -21.759 14.305 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.077 3.923 13 N -0.381 5.381 14 C 0.400 3.600 15 O -0.508 6.508 16 N -0.353 5.353 17 C -0.005 4.005 18 C -0.202 4.202 19 C -0.153 4.153 20 H 0.151 0.849 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.125 4.125 24 C -0.170 4.170 25 C 0.057 3.943 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.246 0.754 33 H 0.248 0.752 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 1.931 -21.442 13.909 25.631 hybrid contribution 0.615 1.409 -0.093 1.540 sum 2.546 -20.033 13.815 24.468 Atomic orbital electron populations 1.70218 1.06953 1.25855 1.55484 1.25885 0.95995 1.01859 1.01346 0.85230 0.78247 0.79382 0.77397 1.21204 1.22206 1.18983 1.19580 0.93207 0.85865 1.40506 0.90767 1.44364 1.35714 1.02575 1.50653 1.21042 0.97892 0.85548 0.93977 1.22129 0.96172 1.00401 0.97252 1.20474 0.98328 0.87027 0.86463 1.45105 1.08676 1.46605 1.37752 1.16143 0.84643 0.79039 0.80142 1.90904 1.23258 1.68994 1.67678 1.44133 1.09598 1.45707 1.35899 1.21456 0.90833 1.00753 0.87486 1.23649 1.02292 0.97620 0.96614 1.23865 1.02090 0.90026 0.99351 0.84915 1.22016 0.98783 0.97066 0.95102 1.22591 1.02447 0.94014 0.96511 1.21846 0.96735 0.95655 0.98297 1.22308 1.00088 0.96110 0.98448 1.20452 0.87791 0.97348 0.88715 0.94191 0.91278 0.97096 0.89092 0.90601 0.92813 0.75418 0.75177 0.87930 0.88411 0.88895 0.90472 0.91248 0.90086 0.92145 0.93123 0.92151 0.94008 0.92719 0.99418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 11.19 21.65 0.24 -57.33 16 2 C -0.06 -3.18 4.91 84.86 0.42 -2.76 16 3 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 8 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.21 3.00 -699.10 -2.09 -33.31 16 10 C 0.14 5.77 6.52 86.36 0.56 6.33 16 11 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 12 C 0.18 6.42 2.42 45.02 0.11 6.53 16 13 N -0.73 -19.86 5.08 -457.70 -2.33 -22.19 16 14 C 0.70 21.52 8.23 179.06 1.47 22.99 16 15 O -0.63 -25.71 14.20 -4.00 -0.06 -25.77 16 16 N -0.70 -15.24 5.67 -434.71 -2.46 -17.70 16 17 C 0.08 1.74 2.99 4.32 0.01 1.75 16 18 C -0.16 -2.86 10.06 30.59 0.31 -2.56 16 19 C -0.13 -1.79 6.94 -10.07 -0.07 -1.86 16 20 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 21 C -0.09 -1.04 6.63 31.67 0.21 -0.83 16 22 C -0.12 -1.80 6.88 31.69 0.22 -1.58 16 23 C -0.09 -2.03 5.62 31.47 0.18 -1.85 16 24 C -0.13 -5.40 5.65 30.68 0.17 -5.22 16 25 C 0.18 9.53 5.31 86.37 0.46 9.99 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 28 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 2.22 7.58 -2.39 -0.02 2.21 16 32 H 0.41 7.96 8.62 -92.71 -0.80 7.16 16 33 H 0.41 5.94 8.84 -92.70 -0.82 5.12 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.52 6.71 -2.39 -0.02 1.50 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 3.19 6.04 -2.39 -0.01 3.17 16 45 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: -1.00 -73.90 353.23 -0.27 -74.17 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.63 Total: 21.07 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.03 Total: 13.68 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -6.64 Total: -130.53 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -73.90 -0.27 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.238 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds