Wall clock time and date at job start Tue Mar 31 2020 07:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48496 * 109.46997 * 274.06383 * 3 2 1 5 5 H 1.48503 * 109.47242 * 34.06433 * 3 2 1 6 6 H 1.48496 * 109.46930 * 154.06328 * 3 2 1 7 7 C 1.38806 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00092 * 197.52566 * 7 2 1 9 9 N 1.36937 * 120.00354 * 17.52927 * 7 2 1 10 10 C 1.46926 * 120.63487 * 207.99875 * 9 7 2 11 11 C 1.53187 * 108.77564 * 233.62715 * 10 9 7 12 12 C 1.53039 * 109.31423 * 305.36107 * 11 10 9 13 13 N 1.46499 * 109.46025 * 181.38485 * 12 11 10 14 14 C 1.34775 * 119.99975 * 154.97735 * 13 12 11 15 15 O 1.21589 * 120.00188 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00060 * 180.27790 * 14 13 12 17 17 C 1.46496 * 120.00238 * 179.72018 * 16 14 13 18 18 C 1.52998 * 119.29726 * 109.04673 * 17 16 14 19 19 C 1.53872 * 121.33395 * 180.88249 * 17 16 14 20 20 H 1.08997 * 121.33002 * 0.56945 * 19 17 16 21 21 C 1.54263 * 106.60069 * 138.06405 * 19 17 16 22 22 C 1.54892 * 104.19584 * 336.39070 * 21 19 17 23 23 C 1.54271 * 117.41316 * 314.71135 * 17 16 14 24 24 C 1.53042 * 109.52331 * 61.37270 * 12 11 10 25 25 C 1.46931 * 120.62807 * 28.01787 * 9 7 2 26 26 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.58379 * 113.83721 * 10 9 7 28 28 H 1.09004 * 109.58376 * 353.41597 * 10 9 7 29 29 H 1.09004 * 109.49679 * 185.40967 * 11 10 9 30 30 H 1.09005 * 109.52504 * 65.33198 * 11 10 9 31 31 H 1.08996 * 109.46313 * 301.36036 * 12 11 10 32 32 H 0.96996 * 119.99915 * 334.97308 * 13 12 11 33 33 H 0.97000 * 119.99907 * 359.72390 * 16 14 13 34 34 H 1.09008 * 117.46183 * 218.90407 * 18 17 16 35 35 H 1.09003 * 117.46274 * 3.71196 * 18 17 16 36 36 H 1.09000 * 110.49059 * 217.71466 * 21 19 17 37 37 H 1.09001 * 110.59973 * 95.12511 * 21 19 17 38 38 H 1.08996 * 110.76006 * 279.62809 * 22 21 19 39 39 H 1.09006 * 110.91293 * 156.32551 * 22 21 19 40 40 H 1.09000 * 110.48331 * 2.30372 * 23 17 16 41 41 H 1.08998 * 110.49017 * 124.95076 * 23 17 16 42 42 H 1.09007 * 109.50088 * 58.58048 * 24 12 11 43 43 H 1.08998 * 109.49560 * 178.67309 * 24 12 11 44 44 H 1.09002 * 109.58387 * 246.16305 * 25 9 7 45 45 H 1.09003 * 109.58650 * 6.43721 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3734 -2.3607 -0.3561 10 6 1.8147 -3.6542 0.1832 11 6 2.0775 -4.6111 -0.9837 12 6 0.8284 -4.6906 -1.8644 13 7 1.0649 -5.6304 -2.9631 14 6 0.0249 -6.2503 -3.5551 15 8 -1.1095 -6.0300 -3.1771 16 7 0.2428 -7.1191 -4.5622 17 6 -0.8871 -7.7976 -5.2017 18 6 -1.2836 -7.4100 -6.6277 19 6 -0.6722 -8.8102 -6.3402 20 1 0.3275 -9.0581 -6.6970 21 6 -1.6331 -9.9866 -6.0711 22 6 -1.8996 -9.9182 -4.5468 23 6 -1.9713 -8.3941 -4.2804 24 6 0.5169 -3.3056 -2.4362 25 6 0.2359 -2.3339 -1.2858 26 1 -0.4850 0.8401 -0.0004 27 1 1.0368 -4.0665 0.8259 28 1 2.7312 -3.5172 0.7571 29 1 2.3127 -5.6022 -0.5956 30 1 2.9165 -4.2433 -1.5746 31 1 -0.0157 -5.0351 -1.2671 32 1 1.9699 -5.8064 -3.2644 33 1 1.1479 -7.2952 -4.8635 34 1 -2.3478 -7.3674 -6.8596 35 1 -0.6616 -6.6762 -7.1405 36 1 -1.1604 -10.9330 -6.3336 37 1 -2.5619 -9.8580 -6.6269 38 1 -1.0781 -10.3694 -3.9903 39 1 -2.8449 -10.3992 -4.2951 40 1 -1.7453 -8.1783 -3.2361 41 1 -2.9543 -8.0060 -4.5470 42 1 1.3705 -2.9497 -3.0131 43 1 -0.3589 -3.3674 -3.0821 44 1 -0.6706 -2.6387 -0.7629 45 1 0.1092 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596275622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:46 Heat of formation + Delta-G solvation = 14.185875 kcal Electronic energy + Delta-G solvation = -23987.165028 eV Core-core repulsion = 20619.605486 eV Total energy + Delta-G solvation = -3367.559542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44790 -39.01203 -37.24578 -34.30197 -33.69717 -32.02709 -31.28447 -29.94925 -29.33282 -27.89203 -24.97564 -22.98507 -22.30865 -22.16369 -21.11169 -20.31335 -19.67845 -19.18351 -17.93355 -16.95306 -16.53478 -15.50784 -15.20761 -14.78400 -14.68230 -14.11913 -13.79598 -13.70800 -13.46189 -13.34251 -13.15286 -12.96237 -12.65214 -12.33066 -12.06911 -11.46295 -11.29694 -11.24217 -11.12757 -11.08535 -10.89085 -10.81711 -10.72474 -10.34775 -10.20954 -10.13356 -10.02783 -9.78176 -9.71868 -9.47822 -8.88437 -8.55384 -8.34811 -6.66092 -5.75994 -3.18909 2.73028 3.22608 3.39465 3.46228 3.47780 3.54837 4.22641 4.30201 4.41297 4.51499 4.64972 4.88333 5.09334 5.20522 5.32668 5.35873 5.40638 5.44618 5.49574 5.60093 5.61926 5.62751 5.69096 5.81780 5.88065 5.95230 6.12104 6.13269 6.16491 6.27561 6.40384 6.50063 6.61326 6.65440 6.68916 6.81185 6.94860 6.99374 7.15355 7.42510 7.72016 7.82259 8.20839 8.47661 8.84001 9.23498 9.86968 10.43858 11.32467 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.002963 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.206618 B = 9447.257303 C = 9621.967914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.170 3.830 13 N -0.741 5.741 14 C 0.704 3.296 15 O -0.580 6.580 16 N -0.718 5.718 17 C 0.123 3.877 18 C -0.158 4.158 19 C -0.169 4.169 20 H 0.111 0.889 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.146 4.146 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.389 0.611 33 H 0.394 0.606 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -19.632 -12.455 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.066 3.934 13 N -0.394 5.394 14 C 0.405 3.595 15 O -0.457 6.457 16 N -0.372 5.372 17 C 0.034 3.966 18 C -0.197 4.197 19 C -0.188 4.188 20 H 0.129 0.871 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.124 4.124 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.228 0.772 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.552 -19.248 -12.004 22.692 hybrid contribution 1.448 0.796 -0.480 1.720 sum 0.895 -18.453 -12.485 22.297 Atomic orbital electron populations 1.70051 1.05254 1.25507 1.53634 1.25062 0.95272 0.98445 1.00874 0.86281 0.79135 0.83800 0.77572 1.21516 1.21779 1.20411 1.19190 0.92742 0.84889 1.41572 0.91635 1.44119 1.36488 1.01413 1.49543 1.20836 0.97951 0.86731 0.92312 1.22345 0.96848 0.99651 0.99004 1.20895 0.98492 0.88178 0.85841 1.45541 1.07683 1.47437 1.38750 1.15952 0.85361 0.78686 0.79541 1.90923 1.21008 1.67527 1.66279 1.44382 1.08309 1.46655 1.37870 1.21287 0.90317 0.97865 0.87103 1.23974 1.01789 0.95711 0.98225 1.24096 1.00983 0.90254 1.03467 0.87077 1.21954 0.98462 0.96485 0.96299 1.22727 1.01724 0.96415 0.95433 1.22035 0.96907 0.93092 1.00320 1.22571 1.00435 0.95261 1.00414 1.20756 0.88721 0.98149 0.87634 0.93603 0.96168 0.92369 0.92708 0.91958 0.90080 0.77850 0.77241 0.88332 0.88218 0.91196 0.91105 0.91454 0.91063 0.89692 0.90662 0.92881 0.92817 0.96127 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.22 55.49 0.62 -25.96 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 10 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 12 C 0.17 3.03 2.42 -67.89 -0.16 2.86 16 13 N -0.74 -10.72 5.08 -58.64 -0.30 -11.02 16 14 C 0.70 10.99 8.24 -86.92 -0.72 10.27 16 15 O -0.58 -11.48 14.12 5.29 0.07 -11.40 16 16 N -0.72 -8.39 5.67 -51.37 -0.29 -8.68 16 17 C 0.12 1.37 2.93 -130.70 -0.38 0.98 16 18 C -0.16 -1.53 10.18 -25.42 -0.26 -1.79 16 19 C -0.17 -1.39 7.04 -88.19 -0.62 -2.01 16 20 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.09 -0.69 6.64 -25.07 -0.17 -0.86 16 22 C -0.13 -1.07 6.91 -24.73 -0.17 -1.24 16 23 C -0.09 -0.99 5.63 -25.07 -0.14 -1.13 16 24 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 25 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 32 H 0.39 4.41 8.62 -40.82 -0.35 4.06 16 33 H 0.39 3.42 8.84 -40.82 -0.36 3.06 16 34 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.22 6.63 -51.93 -0.34 0.88 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -32.30 353.33 -10.95 -43.25 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.64 Total: 5.54 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -3.19 Total: 1.65 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.48 Total: -61.16 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.30 -10.95 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.432 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds