Wall clock time and date at job start Tue Mar 31 2020 07:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48496 * 109.46997 * 274.06383 * 3 2 1 5 5 H 1.48503 * 109.47242 * 34.06433 * 3 2 1 6 6 H 1.48496 * 109.46930 * 154.06328 * 3 2 1 7 7 C 1.38806 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00092 * 197.52566 * 7 2 1 9 9 N 1.36937 * 120.00354 * 17.52927 * 7 2 1 10 10 C 1.46926 * 120.63487 * 207.99875 * 9 7 2 11 11 C 1.53187 * 108.77564 * 233.62715 * 10 9 7 12 12 C 1.53039 * 109.31423 * 305.36107 * 11 10 9 13 13 N 1.46499 * 109.46025 * 181.38485 * 12 11 10 14 14 C 1.34775 * 119.99975 * 154.97735 * 13 12 11 15 15 O 1.21589 * 120.00188 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00060 * 180.27790 * 14 13 12 17 17 C 1.46496 * 120.00238 * 179.72018 * 16 14 13 18 18 C 1.52998 * 119.29726 * 109.04673 * 17 16 14 19 19 C 1.53872 * 121.33395 * 180.88249 * 17 16 14 20 20 H 1.08997 * 121.33002 * 0.56945 * 19 17 16 21 21 C 1.54263 * 106.60069 * 138.06405 * 19 17 16 22 22 C 1.54892 * 104.19584 * 336.39070 * 21 19 17 23 23 C 1.54271 * 117.41316 * 314.71135 * 17 16 14 24 24 C 1.53042 * 109.52331 * 61.37270 * 12 11 10 25 25 C 1.46931 * 120.62807 * 28.01787 * 9 7 2 26 26 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.58379 * 113.83721 * 10 9 7 28 28 H 1.09004 * 109.58376 * 353.41597 * 10 9 7 29 29 H 1.09004 * 109.49679 * 185.40967 * 11 10 9 30 30 H 1.09005 * 109.52504 * 65.33198 * 11 10 9 31 31 H 1.08996 * 109.46313 * 301.36036 * 12 11 10 32 32 H 0.96996 * 119.99915 * 334.97308 * 13 12 11 33 33 H 0.97000 * 119.99907 * 359.72390 * 16 14 13 34 34 H 1.09008 * 117.46183 * 218.90407 * 18 17 16 35 35 H 1.09003 * 117.46274 * 3.71196 * 18 17 16 36 36 H 1.09000 * 110.49059 * 217.71466 * 21 19 17 37 37 H 1.09001 * 110.59973 * 95.12511 * 21 19 17 38 38 H 1.08996 * 110.76006 * 279.62809 * 22 21 19 39 39 H 1.09006 * 110.91293 * 156.32551 * 22 21 19 40 40 H 1.09000 * 110.48331 * 2.30372 * 23 17 16 41 41 H 1.08998 * 110.49017 * 124.95076 * 23 17 16 42 42 H 1.09007 * 109.50088 * 58.58048 * 24 12 11 43 43 H 1.08998 * 109.49560 * 178.67309 * 24 12 11 44 44 H 1.09002 * 109.58387 * 246.16305 * 25 9 7 45 45 H 1.09003 * 109.58650 * 6.43721 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3734 -2.3607 -0.3561 10 6 1.8147 -3.6542 0.1832 11 6 2.0775 -4.6111 -0.9837 12 6 0.8284 -4.6906 -1.8644 13 7 1.0649 -5.6304 -2.9631 14 6 0.0249 -6.2503 -3.5551 15 8 -1.1095 -6.0300 -3.1771 16 7 0.2428 -7.1191 -4.5622 17 6 -0.8871 -7.7976 -5.2017 18 6 -1.2836 -7.4100 -6.6277 19 6 -0.6722 -8.8102 -6.3402 20 1 0.3275 -9.0581 -6.6970 21 6 -1.6331 -9.9866 -6.0711 22 6 -1.8996 -9.9182 -4.5468 23 6 -1.9713 -8.3941 -4.2804 24 6 0.5169 -3.3056 -2.4362 25 6 0.2359 -2.3339 -1.2858 26 1 -0.4850 0.8401 -0.0004 27 1 1.0368 -4.0665 0.8259 28 1 2.7312 -3.5172 0.7571 29 1 2.3127 -5.6022 -0.5956 30 1 2.9165 -4.2433 -1.5746 31 1 -0.0157 -5.0351 -1.2671 32 1 1.9699 -5.8064 -3.2644 33 1 1.1479 -7.2952 -4.8635 34 1 -2.3478 -7.3674 -6.8596 35 1 -0.6616 -6.6762 -7.1405 36 1 -1.1604 -10.9330 -6.3336 37 1 -2.5619 -9.8580 -6.6269 38 1 -1.0781 -10.3694 -3.9903 39 1 -2.8449 -10.3992 -4.2951 40 1 -1.7453 -8.1783 -3.2361 41 1 -2.9543 -8.0060 -4.5470 42 1 1.3705 -2.9497 -3.0131 43 1 -0.3589 -3.3674 -3.0821 44 1 -0.6706 -2.6387 -0.7629 45 1 0.1092 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:45 Heat of formation + Delta-G solvation = -7.222250 kcal Electronic energy + Delta-G solvation = -23988.093354 eV Core-core repulsion = 20619.605486 eV Total energy + Delta-G solvation = -3368.487868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49256 -40.12021 -38.82812 -35.94794 -34.81757 -33.71636 -32.21992 -31.66838 -30.99599 -28.71178 -26.87268 -24.16018 -23.89257 -23.47269 -22.31486 -21.27558 -21.01912 -20.37342 -19.19553 -18.64615 -17.69487 -16.93830 -16.51501 -16.26911 -15.73467 -15.69802 -15.35860 -15.15136 -14.77087 -14.57764 -14.38748 -14.10208 -14.00003 -13.88744 -13.19113 -13.04725 -12.89830 -12.63867 -12.61247 -12.12411 -12.09502 -11.98993 -11.93134 -11.87103 -11.80862 -11.66449 -11.52431 -11.36434 -11.19391 -10.69656 -10.58637 -10.09118 -9.56959 -8.72387 -7.87598 -5.34049 1.47321 1.48712 1.58327 1.63465 2.15220 2.51478 2.65386 3.20359 3.29801 3.52839 3.66575 3.68810 3.87714 3.88590 4.09778 4.25021 4.34255 4.36619 4.47472 4.51400 4.63766 4.64886 4.66902 4.79888 4.83386 4.88271 4.89417 5.02158 5.05190 5.08367 5.12799 5.20040 5.24530 5.26238 5.31532 5.45010 5.45842 5.61592 5.64119 5.68952 5.70212 6.04804 6.38215 7.12648 7.16914 7.66629 7.83809 8.36924 9.19551 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.002963 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.206618 B = 9447.257303 C = 9621.967914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.261 4.261 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.183 3.817 13 N -0.726 5.726 14 C 0.700 3.300 15 O -0.628 6.628 16 N -0.699 5.699 17 C 0.086 3.914 18 C -0.164 4.164 19 C -0.135 4.135 20 H 0.134 0.866 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.089 4.089 24 C -0.129 4.129 25 C 0.184 3.816 26 H 0.249 0.751 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.041 0.959 44 H -0.012 1.012 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 -21.831 -14.164 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.391 4.391 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.160 4.160 12 C 0.077 3.923 13 N -0.381 5.381 14 C 0.400 3.600 15 O -0.508 6.508 16 N -0.354 5.354 17 C -0.002 4.002 18 C -0.203 4.203 19 C -0.154 4.154 20 H 0.152 0.848 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.170 4.170 25 C 0.057 3.943 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.246 0.754 33 H 0.248 0.752 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.031 -21.515 -13.755 25.617 hybrid contribution 0.607 1.420 0.072 1.546 sum 2.638 -20.096 -13.683 24.454 Atomic orbital electron populations 1.70226 1.06947 1.25852 1.55467 1.25894 0.95997 1.01865 1.01301 0.85210 0.78317 0.79355 0.77316 1.21395 1.22438 1.18718 1.19593 0.93237 0.85855 1.40441 0.90754 1.44364 1.36229 1.02639 1.50072 1.21047 0.97889 0.85531 0.93975 1.22133 0.96224 1.00396 0.97208 1.20476 0.98341 0.86971 0.86504 1.45109 1.08651 1.46505 1.37875 1.16149 0.84661 0.79063 0.80108 1.90904 1.23041 1.69083 1.67801 1.44154 1.09622 1.45193 1.36420 1.21525 0.90660 1.00319 0.87725 1.24041 1.02152 0.97290 0.96830 1.24255 1.01958 0.89486 0.99693 0.84820 1.22010 0.98839 0.97073 0.95046 1.22686 1.02392 0.93857 0.96646 1.21990 0.96643 0.95692 0.98435 1.22308 1.00105 0.96119 0.98433 1.20449 0.87895 0.97281 0.88672 0.94196 0.97084 0.91255 0.89093 0.90583 0.92804 0.75415 0.75169 0.88381 0.87888 0.88900 0.90476 0.91220 0.90172 0.93192 0.91971 0.92147 0.94011 0.99412 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 11.22 21.65 0.24 -57.35 16 2 C -0.06 -3.16 4.90 84.86 0.42 -2.74 16 3 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 9 N -0.61 -31.19 2.99 -699.10 -2.09 -33.28 16 10 C 0.14 5.77 6.52 86.36 0.56 6.33 16 11 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 12 C 0.18 6.41 2.42 45.02 0.11 6.52 16 13 N -0.73 -19.84 5.08 -457.69 -2.33 -22.16 16 14 C 0.70 21.48 8.24 179.05 1.47 22.96 16 15 O -0.63 -25.67 14.12 -4.00 -0.06 -25.73 16 16 N -0.70 -15.22 5.67 -434.70 -2.46 -17.68 16 17 C 0.09 1.80 2.93 4.33 0.01 1.81 16 18 C -0.16 -2.89 10.18 31.44 0.32 -2.57 16 19 C -0.13 -1.79 7.04 -9.22 -0.06 -1.86 16 20 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 21 C -0.09 -1.05 6.64 31.67 0.21 -0.84 16 22 C -0.12 -1.81 6.91 31.89 0.22 -1.59 16 23 C -0.09 -2.09 5.63 31.67 0.18 -1.91 16 24 C -0.13 -5.40 5.65 30.67 0.17 -5.22 16 25 C 0.18 9.53 5.31 86.36 0.46 9.99 16 26 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 32 H 0.41 7.94 8.62 -92.71 -0.80 7.14 16 33 H 0.41 5.93 8.84 -92.71 -0.82 5.11 16 34 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.05 1.51 6.63 -2.39 -0.02 1.49 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.05 3.15 6.06 -2.39 -0.01 3.14 16 Total: -1.00 -73.86 353.33 -0.25 -74.11 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.63 Total: 21.01 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.05 Total: 13.67 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -6.64 Total: -130.47 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.86 -0.25 -74.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.884 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds