Wall clock time and date at job start Tue Mar 31 2020 06:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46984 * 2 1 4 4 C 1.36943 * 119.99984 * 94.13425 * 3 2 1 5 5 H 1.07999 * 119.99652 * 37.30630 * 4 3 2 6 6 C 1.38808 * 119.99869 * 217.31021 * 4 3 2 7 7 N 1.31622 * 120.00172 * 21.60040 * 6 4 3 8 8 Si 1.86801 * 119.99900 * 201.59499 * 6 4 3 9 9 H 1.48493 * 109.47078 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46967 * 119.99975 * 8 6 4 11 11 H 1.48498 * 109.47383 * 239.99995 * 8 6 4 12 12 C 1.46503 * 120.00179 * 273.86043 * 3 2 1 13 13 C 1.50698 * 109.47068 * 270.27265 * 12 3 2 14 14 C 1.38268 * 119.94710 * 269.72894 * 13 12 3 15 15 C 1.38142 * 120.05899 * 179.72642 * 14 13 12 16 16 C 1.38737 * 119.94155 * 0.54032 * 15 14 13 17 17 O 1.35902 * 120.05380 * 179.74609 * 16 15 14 18 18 C 1.42901 * 116.99628 * 185.38856 * 17 16 15 19 19 H 1.09003 * 109.47181 * 35.69072 * 18 17 16 20 20 C 1.52997 * 109.47284 * 275.69047 * 18 17 16 21 21 C 1.52999 * 109.46931 * 155.68925 * 18 17 16 22 22 O 1.42906 * 109.46905 * 65.00022 * 21 18 17 23 23 C 1.42901 * 113.99702 * 179.97438 * 22 21 18 24 24 C 1.38737 * 119.88913 * 359.73246 * 16 15 14 25 25 C 1.38150 * 119.94250 * 359.97438 * 24 16 15 26 26 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47264 * 299.99203 * 1 2 3 28 28 H 1.08996 * 109.47554 * 60.00140 * 1 2 3 29 29 H 1.08997 * 109.47144 * 240.00267 * 2 1 3 30 30 H 1.08996 * 109.47554 * 119.99860 * 2 1 3 31 31 H 0.97004 * 119.99691 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46900 * 30.27190 * 12 3 2 33 33 H 1.08996 * 109.47186 * 150.27623 * 12 3 2 34 34 H 1.08002 * 119.96569 * 359.97438 * 14 13 12 35 35 H 1.07995 * 120.03301 * 180.27313 * 15 14 13 36 36 H 1.09003 * 109.47050 * 60.00281 * 20 18 17 37 37 H 1.08998 * 109.47603 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.47524 * 300.00308 * 20 18 17 39 39 H 1.09000 * 109.46982 * 184.99906 * 21 18 17 40 40 H 1.08996 * 109.47610 * 305.00184 * 21 18 17 41 41 H 1.09004 * 109.46499 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47416 * 299.99674 * 23 22 21 43 43 H 1.08998 * 109.47322 * 60.00453 * 23 22 21 44 44 H 1.07991 * 120.02784 * 180.02562 * 24 16 15 45 45 H 1.07999 * 119.97267 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3271 1.9983 1.1829 5 1 2.7925 1.4367 1.9794 6 6 2.0419 3.3454 1.3581 7 7 1.1264 3.9267 0.6122 8 14 2.9574 4.3332 2.6525 9 1 3.9286 3.4537 3.3511 10 1 3.6840 5.4517 1.9994 11 1 1.9878 4.8799 3.6355 12 6 2.1819 2.1003 -1.2658 13 6 3.5724 1.8690 -1.7989 14 6 4.5972 2.7291 -1.4502 15 6 5.8739 2.5159 -1.9330 16 6 6.1249 1.4441 -2.7774 17 8 7.3789 1.2353 -3.2578 18 6 7.5408 0.1856 -4.2138 19 1 6.6603 0.1388 -4.8547 20 6 7.7114 -1.1478 -3.4833 21 6 8.7796 0.4610 -5.0686 22 8 9.9472 0.4070 -4.2464 23 6 11.1661 0.6512 -4.9513 24 6 5.0937 0.5858 -3.1303 25 6 3.8200 0.7998 -2.6400 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.9275 4.8682 0.7344 32 1 1.4508 1.7362 -1.9877 33 1 2.0291 3.1667 -1.1003 34 1 4.4003 3.5660 -0.7966 35 1 6.6750 3.1855 -1.6568 36 1 6.8289 -1.3440 -2.8744 37 1 7.8354 -1.9484 -4.2125 38 1 8.5919 -1.1010 -2.8424 39 1 8.8533 -0.2909 -5.8543 40 1 8.6978 1.4502 -5.5189 41 1 12.0049 0.5921 -4.2576 42 1 11.2892 -0.0971 -5.7342 43 1 11.1340 1.6442 -5.3994 44 1 5.2866 -0.2495 -3.7871 45 1 3.0168 0.1322 -2.9147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596991963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:05 Heat of formation + Delta-G solvation = -41.694046 kcal Electronic energy + Delta-G solvation = -23774.165470 eV Core-core repulsion = 20371.890041 eV Total energy + Delta-G solvation = -3402.275429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97280 -38.24931 -37.18921 -35.45466 -32.53589 -31.79280 -30.47168 -30.24503 -28.27745 -27.56856 -25.97700 -25.23157 -23.45096 -22.80533 -21.38313 -20.58037 -19.70872 -18.06194 -16.74893 -16.49776 -16.25292 -15.78859 -14.89525 -14.82025 -14.77003 -14.40666 -14.03333 -13.87767 -13.53108 -13.38880 -12.97100 -12.68076 -12.53940 -12.42241 -12.09830 -12.02753 -11.93688 -11.48148 -11.15076 -11.14524 -11.08785 -10.87242 -10.63440 -10.49346 -10.32016 -10.23590 -9.94601 -9.92141 -9.85615 -9.70892 -8.49270 -8.35784 -7.44481 -6.56466 -5.78455 -3.33102 1.97610 2.09644 3.36083 3.38603 3.45828 3.49758 3.52232 4.38164 4.53493 4.60004 4.81178 4.95503 5.03103 5.11207 5.13507 5.33290 5.33896 5.36994 5.41020 5.42049 5.56104 5.67819 5.77660 5.92710 6.03757 6.10225 6.15972 6.21277 6.33660 6.46143 6.53328 6.54523 6.68177 6.80594 6.86392 6.89117 7.01092 7.09598 7.27530 7.42058 7.46571 7.72671 7.84687 7.90675 8.54193 9.19887 9.82440 10.41656 11.22152 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003685 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.073474 B = 7597.551727 C = 8474.363629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 N -0.577 5.577 4 C -0.252 4.252 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.290 1.290 12 C 0.179 3.821 13 C -0.102 4.102 14 C -0.061 4.061 15 C -0.154 4.154 16 C 0.103 3.897 17 O -0.307 6.307 18 C 0.087 3.913 19 H 0.084 0.916 20 C -0.175 4.175 21 C 0.067 3.933 22 O -0.378 6.378 23 C 0.030 3.970 24 C -0.215 4.215 25 C -0.086 4.086 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.254 0.746 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.117 0.883 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.544 -7.306 -12.973 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.296 5.296 4 C -0.382 4.382 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.217 1.217 12 C 0.053 3.947 13 C -0.105 4.105 14 C -0.080 4.080 15 C -0.173 4.173 16 C 0.058 3.942 17 O -0.222 6.222 18 C 0.030 3.970 19 H 0.101 0.899 20 C -0.233 4.233 21 C -0.010 4.010 22 O -0.297 6.297 23 C -0.066 4.066 24 C -0.233 4.233 25 C -0.105 4.105 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.134 0.866 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.617 -7.092 -12.699 19.255 hybrid contribution 0.410 0.429 0.256 0.646 sum 13.027 -6.663 -12.442 19.207 Atomic orbital electron populations 1.22274 0.99698 0.98306 1.01891 1.20859 0.91837 0.87458 0.98136 1.43770 1.73968 1.10055 1.01851 1.19074 1.32924 0.93111 0.93063 0.92327 1.25125 0.96608 0.99007 0.98044 1.70014 1.29490 1.11417 1.41796 0.86434 0.79832 0.80318 0.81546 1.20007 1.21278 1.21669 1.19929 0.87229 1.01535 0.86054 1.21178 1.00043 0.94088 0.95240 1.20945 0.91025 0.99107 0.96910 1.20395 0.97733 0.98036 1.01131 1.18864 0.83168 0.95599 0.96524 1.86151 1.26672 1.52235 1.57117 1.22367 0.96481 0.87749 0.90390 0.89876 1.22266 1.03855 0.95587 1.01568 1.22628 0.84891 1.00971 0.92513 1.87989 1.13938 1.92443 1.35297 1.22746 0.87106 0.99372 0.97405 1.21078 0.94061 1.01678 1.06504 1.20828 0.95325 0.97211 0.97087 0.95151 0.92634 0.93870 0.95195 0.93874 0.93604 0.94996 0.88118 0.85620 0.86305 0.91581 0.91689 0.90671 0.91636 0.92370 0.89599 0.94278 0.94062 0.86554 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.06 6.39 -4.04 -0.03 3.03 16 3 N -0.58 -14.17 2.41 -174.62 -0.42 -14.59 16 4 C -0.25 -6.79 9.43 -15.06 -0.14 -6.94 16 5 H 0.06 1.62 7.92 -52.49 -0.42 1.20 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.25 16 7 N -0.88 -24.81 11.49 55.49 0.64 -24.17 16 8 Si 0.89 21.35 29.61 -169.99 -5.03 16.31 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.18 4.13 5.43 -5.19 -0.03 4.11 16 13 C -0.10 -2.12 5.46 -104.60 -0.57 -2.69 16 14 C -0.06 -1.25 9.69 -39.61 -0.38 -1.64 16 15 C -0.15 -2.87 9.99 -39.43 -0.39 -3.27 16 16 C 0.10 1.79 6.59 -39.21 -0.26 1.53 16 17 O -0.31 -4.92 9.77 -24.29 -0.24 -5.15 16 18 C 0.09 1.04 2.64 -26.73 -0.07 0.97 16 19 H 0.08 0.89 6.35 -51.93 -0.33 0.56 16 20 C -0.18 -1.99 8.96 37.16 0.33 -1.66 16 21 C 0.07 0.67 5.81 37.16 0.22 0.89 16 22 O -0.38 -4.41 9.79 -40.09 -0.39 -4.81 16 23 C 0.03 0.24 11.01 101.05 1.11 1.35 16 24 C -0.21 -3.51 8.22 -39.43 -0.32 -3.83 16 25 C -0.09 -1.55 9.69 -39.60 -0.38 -1.93 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.04 0.92 8.01 -51.93 -0.42 0.50 16 31 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.03 0.70 8.02 -51.93 -0.42 0.29 16 33 H 0.10 2.62 5.47 -51.93 -0.28 2.34 16 34 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.07 0.82 6.84 -51.93 -0.36 0.46 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.95 7.56 -51.93 -0.39 0.56 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.12 1.57 5.40 -52.49 -0.28 1.29 16 45 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -29.95 368.31 -8.04 -38.00 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.52 Total: 1.56 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.63 Total: -12.70 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.22 Total: -38.76 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.63 Total: -9.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.95 -8.04 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596991963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.698 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds