Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46984 * 2 1 4 4 C 1.36943 * 119.99984 * 94.13425 * 3 2 1 5 5 H 1.07999 * 119.99652 * 37.30630 * 4 3 2 6 6 C 1.38808 * 119.99869 * 217.31021 * 4 3 2 7 7 N 1.31622 * 120.00172 * 21.60040 * 6 4 3 8 8 Si 1.86801 * 119.99900 * 201.59499 * 6 4 3 9 9 H 1.48493 * 109.47078 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46967 * 119.99975 * 8 6 4 11 11 H 1.48498 * 109.47383 * 239.99995 * 8 6 4 12 12 C 1.46503 * 120.00179 * 273.86043 * 3 2 1 13 13 C 1.50698 * 109.47068 * 270.27265 * 12 3 2 14 14 C 1.38268 * 119.94710 * 269.72894 * 13 12 3 15 15 C 1.38142 * 120.05899 * 179.72642 * 14 13 12 16 16 C 1.38737 * 119.94155 * 0.54032 * 15 14 13 17 17 O 1.35902 * 120.05380 * 179.74609 * 16 15 14 18 18 C 1.42901 * 116.99628 * 185.38856 * 17 16 15 19 19 H 1.09003 * 109.47181 * 35.69072 * 18 17 16 20 20 C 1.52997 * 109.47284 * 275.69047 * 18 17 16 21 21 C 1.52999 * 109.46931 * 155.68925 * 18 17 16 22 22 O 1.42906 * 109.46905 * 65.00022 * 21 18 17 23 23 C 1.42901 * 113.99702 * 179.97438 * 22 21 18 24 24 C 1.38737 * 119.88913 * 359.73246 * 16 15 14 25 25 C 1.38150 * 119.94250 * 359.97438 * 24 16 15 26 26 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47264 * 299.99203 * 1 2 3 28 28 H 1.08996 * 109.47554 * 60.00140 * 1 2 3 29 29 H 1.08997 * 109.47144 * 240.00267 * 2 1 3 30 30 H 1.08996 * 109.47554 * 119.99860 * 2 1 3 31 31 H 0.97004 * 119.99691 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46900 * 30.27190 * 12 3 2 33 33 H 1.08996 * 109.47186 * 150.27623 * 12 3 2 34 34 H 1.08002 * 119.96569 * 359.97438 * 14 13 12 35 35 H 1.07995 * 120.03301 * 180.27313 * 15 14 13 36 36 H 1.09003 * 109.47050 * 60.00281 * 20 18 17 37 37 H 1.08998 * 109.47603 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.47524 * 300.00308 * 20 18 17 39 39 H 1.09000 * 109.46982 * 184.99906 * 21 18 17 40 40 H 1.08996 * 109.47610 * 305.00184 * 21 18 17 41 41 H 1.09004 * 109.46499 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47416 * 299.99674 * 23 22 21 43 43 H 1.08998 * 109.47322 * 60.00453 * 23 22 21 44 44 H 1.07991 * 120.02784 * 180.02562 * 24 16 15 45 45 H 1.07999 * 119.97267 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3271 1.9983 1.1829 5 1 2.7925 1.4367 1.9794 6 6 2.0419 3.3454 1.3581 7 7 1.1264 3.9267 0.6122 8 14 2.9574 4.3332 2.6525 9 1 3.9286 3.4537 3.3511 10 1 3.6840 5.4517 1.9994 11 1 1.9878 4.8799 3.6355 12 6 2.1819 2.1003 -1.2658 13 6 3.5724 1.8690 -1.7989 14 6 4.5972 2.7291 -1.4502 15 6 5.8739 2.5159 -1.9330 16 6 6.1249 1.4441 -2.7774 17 8 7.3789 1.2353 -3.2578 18 6 7.5408 0.1856 -4.2138 19 1 6.6603 0.1388 -4.8547 20 6 7.7114 -1.1478 -3.4833 21 6 8.7796 0.4610 -5.0686 22 8 9.9472 0.4070 -4.2464 23 6 11.1661 0.6512 -4.9513 24 6 5.0937 0.5858 -3.1303 25 6 3.8200 0.7998 -2.6400 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.9275 4.8682 0.7344 32 1 1.4508 1.7362 -1.9877 33 1 2.0291 3.1667 -1.1003 34 1 4.4003 3.5660 -0.7966 35 1 6.6750 3.1855 -1.6568 36 1 6.8289 -1.3440 -2.8744 37 1 7.8354 -1.9484 -4.2125 38 1 8.5919 -1.1010 -2.8424 39 1 8.8533 -0.2909 -5.8543 40 1 8.6978 1.4502 -5.5189 41 1 12.0049 0.5921 -4.2576 42 1 11.2892 -0.0971 -5.7342 43 1 11.1340 1.6442 -5.3994 44 1 5.2866 -0.2495 -3.7871 45 1 3.0168 0.1322 -2.9147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596991963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = -57.495662 kcal Electronic energy + Delta-G solvation = -23774.850680 eV Core-core repulsion = 20371.890041 eV Total energy + Delta-G solvation = -3402.960638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21461 -39.35853 -38.36849 -37.13759 -33.78605 -33.52817 -32.01116 -31.65549 -30.01072 -28.30590 -27.14338 -26.56005 -25.23770 -24.08120 -22.80654 -22.00717 -21.24460 -19.23893 -18.66642 -17.36237 -17.27961 -16.70372 -16.59165 -16.23907 -15.97389 -15.69446 -15.64940 -15.58927 -15.04768 -14.46992 -14.38038 -14.20721 -13.73312 -13.69258 -13.36445 -13.20644 -13.09153 -12.89187 -12.83183 -12.58328 -12.43667 -12.29707 -12.19240 -12.10250 -11.84824 -11.83185 -11.56519 -11.46297 -11.41458 -10.62247 -10.52541 -9.80712 -8.87869 -8.54410 -7.81718 -5.40363 0.53091 0.63670 1.42085 1.46975 1.55915 2.27967 2.50995 2.83287 2.93465 3.27428 3.76181 3.90723 3.96829 4.02069 4.02824 4.20787 4.36014 4.38270 4.45569 4.46935 4.54422 4.55954 4.61763 4.65071 4.72073 4.80985 4.87259 4.88880 4.89538 4.93005 5.00123 5.08927 5.24122 5.32039 5.32260 5.44349 5.55723 5.57151 5.65094 5.79259 5.97430 6.05269 6.22533 6.50607 6.62611 7.19290 7.88718 8.41608 9.15024 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003685 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.073474 B = 7597.551727 C = 8474.363629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.138 3.862 3 N -0.592 5.592 4 C -0.259 4.259 5 H 0.048 0.952 6 C -0.027 4.027 7 N -0.911 5.911 8 Si 0.942 3.058 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.186 3.814 13 C -0.123 4.123 14 C -0.078 4.078 15 C -0.166 4.166 16 C 0.111 3.889 17 O -0.321 6.321 18 C 0.074 3.926 19 H 0.103 0.897 20 C -0.171 4.171 21 C 0.066 3.934 22 O -0.410 6.410 23 C 0.025 3.975 24 C -0.202 4.202 25 C -0.081 4.081 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.153 0.847 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.897 -9.455 -14.941 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.065 0.935 6 C -0.225 4.225 7 N -0.555 5.555 8 Si 0.770 3.230 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.217 1.217 12 C 0.060 3.940 13 C -0.126 4.126 14 C -0.097 4.097 15 C -0.185 4.185 16 C 0.066 3.934 17 O -0.236 6.236 18 C 0.019 3.981 19 H 0.120 0.880 20 C -0.228 4.228 21 C -0.011 4.011 22 O -0.329 6.329 23 C -0.071 4.071 24 C -0.220 4.220 25 C -0.100 4.100 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.170 0.830 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.989 -9.261 -14.683 22.294 hybrid contribution 0.110 1.001 0.759 1.261 sum 14.098 -8.261 -13.924 21.468 Atomic orbital electron populations 1.22124 0.98688 1.00117 1.00026 1.21001 0.92599 0.85971 0.99126 1.43970 1.74591 1.11106 1.01563 1.19164 1.32461 0.93515 0.93803 0.93484 1.25647 0.97280 0.99719 0.99833 1.70115 1.30766 1.11305 1.43302 0.85616 0.78735 0.79022 0.79595 1.19759 1.21299 1.21664 1.19698 0.89069 0.99427 0.85763 1.20923 0.98495 0.95863 0.97306 1.20780 0.92226 0.99002 0.97663 1.20443 0.97075 0.99147 1.01797 1.18912 0.84178 0.94827 0.95457 1.86161 1.25656 1.53802 1.57995 1.22809 0.98397 0.86866 0.90067 0.87968 1.22231 1.02484 0.96198 1.01898 1.22742 0.83684 1.02200 0.92443 1.87942 1.15273 1.92733 1.36992 1.22909 0.85947 1.00284 0.97926 1.21367 0.92772 1.01990 1.05886 1.20991 0.96736 0.96267 0.95994 0.91418 0.95604 0.94525 0.92789 0.94147 0.93942 0.94399 0.91514 0.88120 0.85678 0.92626 0.88688 0.92417 0.88284 0.92312 0.89154 0.92311 0.93632 0.82955 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 10.24 71.98 0.74 -5.12 16 2 C 0.14 5.77 6.39 86.38 0.55 6.33 16 3 N -0.59 -29.43 2.41 -706.36 -1.70 -31.13 16 4 C -0.26 -14.31 9.43 84.03 0.79 -13.52 16 5 H 0.05 2.66 7.92 -2.91 -0.02 2.64 16 6 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 7 N -0.91 -52.85 11.49 21.65 0.25 -52.60 16 8 Si 0.94 45.17 29.61 68.60 2.03 47.21 16 9 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 12 C 0.19 8.79 5.43 85.63 0.47 9.25 16 13 C -0.12 -5.11 5.46 -19.85 -0.11 -5.22 16 14 C -0.08 -3.28 9.69 22.25 0.22 -3.06 16 15 C -0.17 -6.19 9.99 22.37 0.22 -5.96 16 16 C 0.11 3.68 6.59 22.51 0.15 3.83 16 17 O -0.32 -9.63 9.77 -87.80 -0.86 -10.48 16 18 C 0.07 1.54 2.64 30.59 0.08 1.62 16 19 H 0.10 1.72 6.35 -2.39 -0.02 1.71 16 20 C -0.17 -3.34 8.96 71.98 0.64 -2.69 16 21 C 0.07 1.11 5.81 71.98 0.42 1.52 16 22 O -0.41 -8.66 9.79 -144.34 -1.41 -10.07 16 23 C 0.03 0.34 11.01 113.37 1.25 1.59 16 24 C -0.20 -6.00 8.22 22.37 0.18 -5.81 16 25 C -0.08 -2.76 9.69 22.26 0.22 -2.54 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 30 H 0.04 1.69 8.01 -2.39 -0.02 1.67 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.04 1.68 8.02 -2.39 -0.02 1.66 16 33 H 0.07 3.63 5.47 -2.39 -0.01 3.62 16 34 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.05 1.20 6.84 -2.39 -0.02 1.18 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.15 3.40 5.40 -2.92 -0.02 3.39 16 45 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -66.28 368.31 5.49 -60.79 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.95 Total: 17.18 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 6.24 Total: -20.89 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.45 Total: -83.73 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -2.27 Total: -20.55 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.28 5.49 -60.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596991963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.291 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds