Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47042 * 2 1 4 4 C 1.35904 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38759 * 120.05469 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94209 * 180.02562 * 5 4 3 7 7 C 1.38280 * 120.05723 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.94225 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47434 * 358.42565 * 8 7 6 10 10 C 1.36943 * 119.99346 * 264.51944 * 9 8 7 11 11 H 1.08004 * 119.99340 * 193.19070 * 10 9 8 12 12 C 1.38809 * 120.00061 * 13.19044 * 10 9 8 13 13 N 1.31613 * 120.00448 * 22.24310 * 12 10 9 14 14 Si 1.86801 * 119.99504 * 202.23743 * 12 10 9 15 15 H 1.48496 * 109.47536 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46974 * 120.00823 * 14 12 10 17 17 H 1.48504 * 109.47193 * 240.00040 * 14 12 10 18 18 C 1.46489 * 120.00356 * 84.51136 * 9 8 7 19 19 C 1.53007 * 109.47194 * 85.85715 * 18 9 8 20 20 O 1.42907 * 109.46811 * 64.99705 * 19 18 9 21 21 C 1.42899 * 113.99896 * 180.02562 * 20 19 18 22 22 C 1.38244 * 120.11211 * 359.97438 * 7 6 5 23 23 C 1.50707 * 119.97058 * 180.02562 * 22 7 6 24 24 C 1.38160 * 120.05691 * 359.76622 * 22 7 6 25 25 H 1.08997 * 109.47199 * 300.00676 * 1 2 3 26 26 H 1.09000 * 109.46928 * 60.00281 * 1 2 3 27 27 H 1.09004 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46781 * 119.99187 * 2 1 3 29 29 H 1.08998 * 109.47713 * 239.99426 * 2 1 3 30 30 H 1.08002 * 120.02581 * 0.03265 * 5 4 3 31 31 H 1.08002 * 119.96724 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46683 * 118.42034 * 8 7 6 33 33 H 1.09001 * 109.47320 * 238.41919 * 8 7 6 34 34 H 0.96993 * 120.00643 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.47514 * 205.85409 * 18 9 8 36 36 H 1.09001 * 109.47484 * 325.85667 * 18 9 8 37 37 H 1.08996 * 109.47270 * 185.00323 * 19 18 9 38 38 H 1.08999 * 109.46727 * 305.00227 * 19 18 9 39 39 H 1.08995 * 109.47293 * 59.99666 * 21 20 19 40 40 H 1.08998 * 109.47152 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46711 * 300.00048 * 21 20 19 42 42 H 1.09000 * 109.46762 * 86.72207 * 23 22 7 43 43 H 1.08995 * 109.47059 * 206.72225 * 23 22 7 44 44 H 1.09003 * 109.47178 * 326.71810 * 23 22 7 45 45 H 1.08007 * 120.03186 * 180.25159 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0962 1.8878 -0.0011 8 6 7.5902 2.0853 -0.0017 9 7 8.2553 0.7805 0.0364 10 6 8.6632 0.2547 1.2333 11 1 9.3342 -0.5914 1.2506 12 6 8.2143 0.8092 2.4240 13 7 7.1036 1.5150 2.4438 14 14 9.1866 0.5534 3.9983 15 1 10.3881 -0.2702 3.7099 16 1 9.6081 1.8706 4.5393 17 1 8.3367 -0.1429 4.9975 18 6 8.4838 0.0382 -1.2057 19 6 9.7947 0.5028 -1.8436 20 8 10.8880 0.1580 -0.9904 21 6 12.1658 0.5500 -1.4960 22 6 5.2551 2.9850 -0.0022 23 6 5.8332 4.3768 -0.0034 24 6 3.8851 2.8066 -0.0076 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.7886 -0.5728 -0.0006 31 1 6.2280 -0.2461 -0.0001 32 1 7.8859 2.6175 -0.9058 33 1 7.8802 2.6667 0.8735 34 1 6.7896 1.9022 3.2758 35 1 8.5444 -1.0277 -0.9861 36 1 7.6595 0.2209 -1.8951 37 1 9.9207 0.0159 -2.8106 38 1 9.7684 1.5837 -1.9817 39 1 12.1886 1.6318 -1.6267 40 1 12.9423 0.2523 -0.7913 41 1 12.3413 0.0643 -2.4559 42 1 6.0269 4.6888 -1.0297 43 1 5.1248 5.0648 0.4580 44 1 6.7659 4.3833 0.5607 45 1 3.2283 3.6641 -0.0126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597145962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = -32.356462 kcal Electronic energy + Delta-G solvation = -24459.708880 eV Core-core repulsion = 21057.838359 eV Total energy + Delta-G solvation = -3401.870521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.42393 -37.72996 -37.08368 -35.15204 -31.96842 -31.52735 -31.37897 -29.74442 -28.08052 -26.48972 -25.78252 -24.92794 -23.24225 -23.14785 -21.20493 -20.23531 -19.47560 -17.11729 -16.78509 -15.84003 -15.69141 -15.55277 -15.15404 -14.71560 -14.45215 -14.09862 -13.61001 -13.47662 -13.18191 -13.11159 -12.67491 -12.61884 -12.51814 -12.24612 -12.06157 -11.52227 -11.46179 -11.30680 -11.17250 -11.12964 -10.91566 -10.78702 -10.68236 -10.37220 -10.27288 -10.06687 -9.86891 -9.70904 -9.61145 -9.02613 -8.43081 -7.78068 -6.95535 -6.80555 -5.63851 -3.00370 2.35247 2.58058 3.45278 3.54866 3.58143 3.74359 4.45156 4.58999 4.81330 5.08737 5.17745 5.35552 5.41105 5.49801 5.59884 5.61731 5.68630 5.75408 5.79520 5.90088 5.92162 5.96896 5.99226 6.00998 6.01697 6.13806 6.17056 6.23578 6.35920 6.41376 6.43296 6.56664 6.71278 6.86552 6.87528 7.11380 7.29029 7.40216 7.57611 7.77629 7.82980 7.95083 7.97243 8.27053 8.43030 9.29378 9.92363 10.37021 11.38183 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014529 B = 0.004893 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.655016 B = 5721.339812 C = 6339.031039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.328 6.328 4 C 0.092 3.908 5 C -0.218 4.218 6 C -0.036 4.036 7 C -0.038 4.038 8 C 0.207 3.793 9 N -0.587 5.587 10 C -0.237 4.237 11 H 0.075 0.925 12 C -0.002 4.002 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.296 1.296 18 C 0.146 3.854 19 C 0.042 3.958 20 O -0.365 6.365 21 C 0.032 3.968 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.159 4.159 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.018 0.982 33 H 0.098 0.902 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 0.167 -8.639 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.243 6.243 4 C 0.048 3.952 5 C -0.237 4.237 6 C -0.054 4.054 7 C -0.041 4.041 8 C 0.081 3.919 9 N -0.307 5.307 10 C -0.366 4.366 11 H 0.093 0.907 12 C -0.199 4.199 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.220 1.220 17 H -0.224 1.224 18 C 0.019 3.981 19 C -0.037 4.037 20 O -0.283 6.283 21 C -0.065 4.065 22 C -0.070 4.070 23 C -0.160 4.160 24 C -0.177 4.177 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.036 0.964 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.313 0.272 -8.301 9.359 hybrid contribution 0.569 -0.242 0.874 1.070 sum -3.745 0.029 -7.427 8.318 Atomic orbital electron populations 1.21752 0.93635 1.02223 1.03053 1.22569 0.94906 0.83199 1.01038 1.85944 1.20405 1.27973 1.90024 1.18719 0.81025 0.94339 1.01076 1.21073 0.95071 0.96487 1.11024 1.20735 0.92500 0.98187 0.94006 1.20357 0.97649 0.91555 0.94575 1.19741 0.86547 0.87216 0.98370 1.43967 1.67378 1.17443 1.01934 1.19228 1.21167 1.13709 0.82532 0.90744 1.24731 0.96601 1.01364 0.97236 1.70147 1.18703 1.39265 1.25520 0.86372 0.80070 0.77137 0.84155 1.20541 1.21969 1.22378 1.20847 0.91715 0.96476 0.89091 1.23433 0.89741 0.98420 0.92121 1.88102 1.13351 1.80640 1.46198 1.22632 0.87219 0.98346 0.98315 1.19303 0.91825 0.95312 1.00563 1.20659 1.01263 0.93219 1.00908 1.19920 0.94399 0.93750 1.09677 0.91828 0.91906 0.90929 0.92533 0.92716 0.87547 0.85620 0.96373 0.88417 0.93957 0.92392 0.92958 0.95272 0.94388 0.94927 0.90522 0.95383 0.92455 0.92825 0.91088 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.83 5.46 37.16 0.20 1.03 16 3 O -0.33 -5.93 10.14 -19.44 -0.20 -6.12 16 4 C 0.09 1.84 6.69 -39.21 -0.26 1.58 16 5 C -0.22 -4.44 9.04 -39.43 -0.36 -4.80 16 6 C -0.04 -0.80 8.56 -39.61 -0.34 -1.14 16 7 C -0.04 -0.85 4.23 -104.60 -0.44 -1.29 16 8 C 0.21 4.65 4.11 -5.19 -0.02 4.63 16 9 N -0.59 -13.58 1.33 -174.61 -0.23 -13.82 16 10 C -0.24 -6.20 9.22 -15.06 -0.14 -6.33 16 11 H 0.07 2.02 7.92 -52.48 -0.42 1.60 16 12 C 0.00 -0.05 4.90 -17.43 -0.09 -0.14 16 13 N -0.89 -24.22 9.05 55.49 0.50 -23.72 16 14 Si 0.89 21.83 29.61 -169.99 -5.03 16.80 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 18 C 0.15 2.85 5.07 -4.04 -0.02 2.83 16 19 C 0.04 0.75 6.28 37.16 0.23 0.98 16 20 O -0.36 -7.09 10.37 -35.23 -0.37 -7.46 16 21 C 0.03 0.47 11.01 101.05 1.11 1.59 16 22 C -0.07 -1.40 5.88 -104.64 -0.62 -2.02 16 23 C -0.10 -1.77 9.54 36.01 0.34 -1.43 16 24 C -0.16 -3.15 9.63 -39.43 -0.38 -3.53 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 29 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.11 1.94 6.30 -52.49 -0.33 1.61 16 31 H 0.13 2.96 6.13 -52.49 -0.32 2.64 16 32 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.10 2.47 5.43 -51.93 -0.28 2.19 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.06 1.15 8.01 -51.93 -0.42 0.74 16 36 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 44 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 45 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -29.31 361.31 -7.79 -37.11 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.53 Total: 1.04 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.39 Total: -9.27 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.27 Total: -37.54 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.56 Total: -13.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.31 -7.79 -37.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.749 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds