Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47042 * 2 1 4 4 C 1.35904 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38759 * 120.05469 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94209 * 180.02562 * 5 4 3 7 7 C 1.38280 * 120.05723 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.94225 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47434 * 358.42565 * 8 7 6 10 10 C 1.36943 * 119.99346 * 264.51944 * 9 8 7 11 11 H 1.08004 * 119.99340 * 193.19070 * 10 9 8 12 12 C 1.38809 * 120.00061 * 13.19044 * 10 9 8 13 13 N 1.31613 * 120.00448 * 22.24310 * 12 10 9 14 14 Si 1.86801 * 119.99504 * 202.23743 * 12 10 9 15 15 H 1.48496 * 109.47536 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46974 * 120.00823 * 14 12 10 17 17 H 1.48504 * 109.47193 * 240.00040 * 14 12 10 18 18 C 1.46489 * 120.00356 * 84.51136 * 9 8 7 19 19 C 1.53007 * 109.47194 * 85.85715 * 18 9 8 20 20 O 1.42907 * 109.46811 * 64.99705 * 19 18 9 21 21 C 1.42899 * 113.99896 * 180.02562 * 20 19 18 22 22 C 1.38244 * 120.11211 * 359.97438 * 7 6 5 23 23 C 1.50707 * 119.97058 * 180.02562 * 22 7 6 24 24 C 1.38160 * 120.05691 * 359.76622 * 22 7 6 25 25 H 1.08997 * 109.47199 * 300.00676 * 1 2 3 26 26 H 1.09000 * 109.46928 * 60.00281 * 1 2 3 27 27 H 1.09004 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46781 * 119.99187 * 2 1 3 29 29 H 1.08998 * 109.47713 * 239.99426 * 2 1 3 30 30 H 1.08002 * 120.02581 * 0.03265 * 5 4 3 31 31 H 1.08002 * 119.96724 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46683 * 118.42034 * 8 7 6 33 33 H 1.09001 * 109.47320 * 238.41919 * 8 7 6 34 34 H 0.96993 * 120.00643 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.47514 * 205.85409 * 18 9 8 36 36 H 1.09001 * 109.47484 * 325.85667 * 18 9 8 37 37 H 1.08996 * 109.47270 * 185.00323 * 19 18 9 38 38 H 1.08999 * 109.46727 * 305.00227 * 19 18 9 39 39 H 1.08995 * 109.47293 * 59.99666 * 21 20 19 40 40 H 1.08998 * 109.47152 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46711 * 300.00048 * 21 20 19 42 42 H 1.09000 * 109.46762 * 86.72207 * 23 22 7 43 43 H 1.08995 * 109.47059 * 206.72225 * 23 22 7 44 44 H 1.09003 * 109.47178 * 326.71810 * 23 22 7 45 45 H 1.08007 * 120.03186 * 180.25159 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0962 1.8878 -0.0011 8 6 7.5902 2.0853 -0.0017 9 7 8.2553 0.7805 0.0364 10 6 8.6632 0.2547 1.2333 11 1 9.3342 -0.5914 1.2506 12 6 8.2143 0.8092 2.4240 13 7 7.1036 1.5150 2.4438 14 14 9.1866 0.5534 3.9983 15 1 10.3881 -0.2702 3.7099 16 1 9.6081 1.8706 4.5393 17 1 8.3367 -0.1429 4.9975 18 6 8.4838 0.0382 -1.2057 19 6 9.7947 0.5028 -1.8436 20 8 10.8880 0.1580 -0.9904 21 6 12.1658 0.5500 -1.4960 22 6 5.2551 2.9850 -0.0022 23 6 5.8332 4.3768 -0.0034 24 6 3.8851 2.8066 -0.0076 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.7886 -0.5728 -0.0006 31 1 6.2280 -0.2461 -0.0001 32 1 7.8859 2.6175 -0.9058 33 1 7.8802 2.6667 0.8735 34 1 6.7896 1.9022 3.2758 35 1 8.5444 -1.0277 -0.9861 36 1 7.6595 0.2209 -1.8951 37 1 9.9207 0.0159 -2.8106 38 1 9.7684 1.5837 -1.9817 39 1 12.1886 1.6318 -1.6267 40 1 12.9423 0.2523 -0.7913 41 1 12.3413 0.0643 -2.4559 42 1 6.0269 4.6888 -1.0297 43 1 5.1248 5.0648 0.4580 44 1 6.7659 4.3833 0.5607 45 1 3.2283 3.6641 -0.0126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597145962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -47.221586 kcal Electronic energy + Delta-G solvation = -24460.353480 eV Core-core repulsion = 21057.838359 eV Total energy + Delta-G solvation = -3402.515121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91409 -39.24179 -38.49352 -36.82606 -33.40459 -33.33115 -32.70772 -31.22837 -29.68366 -28.00344 -27.10577 -26.61506 -24.93771 -24.28600 -22.77006 -21.84507 -21.01590 -18.64997 -18.54256 -17.31250 -17.05465 -16.90660 -16.69345 -16.27439 -16.09606 -15.60387 -15.39765 -14.95599 -14.70183 -14.53777 -14.19476 -13.85973 -13.77941 -13.49838 -13.35245 -13.15907 -12.83248 -12.81916 -12.74402 -12.65030 -12.40248 -12.37499 -12.14361 -12.01940 -11.94930 -11.78814 -11.62019 -11.29347 -11.22202 -10.39903 -10.37107 -9.35412 -8.75126 -8.48912 -7.64817 -5.00823 0.76423 0.97778 1.46658 1.52601 1.60271 2.45955 2.61215 3.15047 3.20682 3.43140 3.72351 4.07996 4.10742 4.20388 4.31355 4.39254 4.40718 4.48481 4.50654 4.56167 4.61545 4.64655 4.70066 4.74061 4.82741 4.85148 4.89687 4.93365 4.95243 4.96551 5.11935 5.18933 5.22576 5.26088 5.30649 5.49334 5.65010 5.70480 5.84674 5.96221 6.23416 6.30017 6.44424 6.56533 6.76547 7.30623 8.02194 8.42155 9.32206 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014529 B = 0.004893 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.655016 B = 5721.339812 C = 6339.031039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.336 6.336 4 C 0.092 3.908 5 C -0.226 4.226 6 C -0.051 4.051 7 C -0.057 4.057 8 C 0.217 3.783 9 N -0.597 5.597 10 C -0.230 4.230 11 H 0.060 0.940 12 C -0.043 4.043 13 N -0.901 5.901 14 Si 0.939 3.061 15 H -0.280 1.280 16 H -0.297 1.297 17 H -0.304 1.304 18 C 0.144 3.856 19 C 0.049 3.951 20 O -0.404 6.404 21 C 0.028 3.972 22 C -0.073 4.073 23 C -0.099 4.099 24 C -0.168 4.168 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.239 0.761 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 0.438 -9.972 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 O -0.251 6.251 4 C 0.048 3.952 5 C -0.244 4.244 6 C -0.069 4.069 7 C -0.059 4.059 8 C 0.091 3.909 9 N -0.318 5.318 10 C -0.361 4.361 11 H 0.078 0.922 12 C -0.239 4.239 13 N -0.547 5.547 14 Si 0.771 3.229 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.232 1.232 18 C 0.018 3.982 19 C -0.030 4.030 20 O -0.323 6.323 21 C -0.068 4.068 22 C -0.074 4.074 23 C -0.156 4.156 24 C -0.186 4.186 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.976 0.532 -9.667 10.886 hybrid contribution 0.755 -0.390 1.216 1.483 sum -4.222 0.142 -8.452 9.448 Atomic orbital electron populations 1.21772 0.90855 1.04088 1.03245 1.22914 0.97110 0.81501 1.01215 1.85951 1.19090 1.30412 1.89656 1.18864 0.81982 0.94307 1.00072 1.21200 0.94508 0.97636 1.11090 1.20629 0.93088 0.97718 0.95511 1.20340 0.97441 0.92111 0.96049 1.19544 0.87079 0.86623 0.97612 1.44051 1.67543 1.17979 1.02200 1.19211 1.20043 1.12918 0.83891 0.92212 1.25159 0.97465 1.02326 0.98922 1.70300 1.19368 1.40187 1.24877 0.85635 0.78940 0.76446 0.81924 1.20541 1.22440 1.23243 1.20984 0.93527 0.95585 0.88089 1.23275 0.88277 0.98573 0.92833 1.88034 1.15208 1.81238 1.47850 1.22808 0.85367 0.99002 0.99651 1.19648 0.92057 0.96328 0.99390 1.20669 1.00745 0.91806 1.02378 1.20214 0.94580 0.94514 1.09312 0.91988 0.91343 0.88228 0.93040 0.91849 0.86067 0.87692 0.94709 0.91517 0.95123 0.93393 0.91491 0.92023 0.94423 0.94346 0.89814 0.92930 0.90008 0.91126 0.92565 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.28 71.98 0.74 -1.98 16 2 C 0.05 1.27 5.46 71.98 0.39 1.66 16 3 O -0.34 -11.64 10.14 -92.47 -0.94 -12.58 16 4 C 0.09 3.60 6.69 22.51 0.15 3.75 16 5 C -0.23 -9.16 9.04 22.37 0.20 -8.96 16 6 C -0.05 -2.29 8.56 22.25 0.19 -2.10 16 7 C -0.06 -2.50 4.23 -19.85 -0.08 -2.58 16 8 C 0.22 9.82 4.11 85.63 0.35 10.17 16 9 N -0.60 -27.92 1.33 -706.33 -0.94 -28.86 16 10 C -0.23 -12.26 9.22 84.03 0.77 -11.48 16 11 H 0.06 3.31 7.92 -2.91 -0.02 3.29 16 12 C -0.04 -2.35 4.90 84.86 0.42 -1.93 16 13 N -0.90 -50.03 9.05 21.65 0.20 -49.84 16 14 Si 0.94 45.88 29.61 68.60 2.03 47.91 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 18 C 0.14 5.59 5.07 86.38 0.44 6.03 16 19 C 0.05 1.66 6.28 71.98 0.45 2.11 16 20 O -0.40 -15.33 10.37 -148.98 -1.55 -16.87 16 21 C 0.03 0.78 11.01 113.37 1.25 2.03 16 22 C -0.07 -2.92 5.88 -19.88 -0.12 -3.04 16 23 C -0.10 -3.25 9.54 71.24 0.68 -2.57 16 24 C -0.17 -6.45 9.63 22.36 0.22 -6.23 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.42 7.66 -2.39 -0.02 1.40 16 29 H 0.06 1.57 7.66 -2.39 -0.02 1.56 16 30 H 0.12 4.39 6.30 -2.91 -0.02 4.37 16 31 H 0.11 5.08 6.13 -2.91 -0.02 5.07 16 32 H 0.04 1.43 8.11 -2.38 -0.02 1.41 16 33 H 0.07 3.45 5.43 -2.39 -0.01 3.44 16 34 H 0.24 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.05 1.92 8.01 -2.38 -0.02 1.90 16 36 H 0.07 2.37 7.95 -2.39 -0.02 2.35 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 44 H 0.06 2.01 6.72 -2.39 -0.02 1.99 16 45 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -63.35 361.31 5.81 -57.54 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.95 Total: 17.82 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 6.05 Total: -15.13 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -0.74 Total: -78.69 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -2.48 Total: -29.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -63.35 5.81 -57.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.321 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds