Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99730 * 2 1 4 4 H 1.48502 * 109.46946 * 269.99489 * 3 2 1 5 5 H 1.48491 * 109.47237 * 30.00265 * 3 2 1 6 6 H 1.48507 * 109.46686 * 150.00176 * 3 2 1 7 7 C 1.37873 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00585 * 172.92705 * 7 2 1 9 9 C 1.50706 * 119.99930 * 352.92571 * 7 2 1 10 10 C 1.53001 * 115.54869 * 84.53153 * 9 7 2 11 11 N 1.46498 * 109.47018 * 39.68373 * 10 9 7 12 12 C 1.34780 * 119.99633 * 181.14502 * 11 10 9 13 13 O 1.21585 * 119.99967 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99857 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99939 * 179.97438 * 14 12 11 16 16 H 1.09003 * 115.55423 * 350.70235 * 15 14 12 17 17 C 1.53060 * 117.50768 * 136.46366 * 15 14 12 18 18 C 1.52724 * 59.94278 * 107.46462 * 17 15 14 19 19 C 1.53231 * 117.83823 * 252.26615 * 18 17 15 20 20 C 1.53251 * 108.62932 * 163.02074 * 19 18 17 21 21 N 1.46822 * 109.44795 * 55.57147 * 20 19 18 22 22 C 1.46811 * 111.58494 * 295.18072 * 21 20 19 23 23 C 1.53220 * 117.84713 * 107.74356 * 18 17 15 24 24 C 1.52992 * 117.51713 * 230.23426 * 9 7 2 25 25 C 1.52998 * 60.00155 * 107.47947 * 24 9 7 26 26 H 0.97004 * 119.99877 * 5.03824 * 1 2 3 27 27 H 1.08998 * 109.47173 * 279.68095 * 10 9 7 28 28 H 1.08999 * 109.46672 * 159.68234 * 10 9 7 29 29 H 0.96997 * 120.00448 * 1.14135 * 11 10 9 30 30 H 0.96997 * 119.99486 * 359.97438 * 14 12 11 31 31 H 1.08999 * 117.50099 * 359.97438 * 17 15 14 32 32 H 1.08993 * 117.50647 * 214.94052 * 17 15 14 33 33 H 1.08998 * 109.60904 * 43.28183 * 19 18 17 34 34 H 1.08997 * 109.61289 * 282.76964 * 19 18 17 35 35 H 1.09000 * 109.47801 * 295.58057 * 20 19 18 36 36 H 1.08998 * 109.48148 * 175.56386 * 20 19 18 37 37 H 1.00900 * 110.99802 * 59.56319 * 21 20 19 38 38 H 1.08994 * 109.47455 * 184.81233 * 22 21 20 39 39 H 1.09003 * 109.46971 * 304.82644 * 22 21 20 40 40 H 1.09002 * 109.60400 * 316.72045 * 23 18 17 41 41 H 1.09001 * 109.60628 * 77.22926 * 23 18 17 42 42 H 1.09001 * 117.49775 * 214.96840 * 24 9 7 43 43 H 1.09003 * 117.50478 * 359.97438 * 24 9 7 44 44 H 1.09000 * 117.50390 * 252.50897 * 25 24 9 45 45 H 1.09001 * 117.49979 * 107.48491 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1157 9 6 1.2596 -2.4943 0.1596 10 6 0.6734 -3.0816 -1.1258 11 7 1.6225 -2.8933 -2.2258 12 6 1.3077 -3.3143 -3.4669 13 8 0.2363 -3.8507 -3.6733 14 7 2.1810 -3.1416 -4.4789 15 6 1.8391 -3.5997 -5.8277 16 1 0.9372 -4.2071 -5.9034 17 6 2.1621 -2.6640 -6.9951 18 6 2.9919 -3.9271 -6.7750 19 6 4.4203 -3.7617 -6.2456 20 6 4.9018 -5.1126 -5.7055 21 7 4.7812 -6.1304 -6.7568 22 6 3.3794 -6.3608 -7.1272 23 6 2.8022 -5.0882 -7.7565 24 6 1.7703 -3.4759 1.2162 25 6 0.4721 -2.7023 1.4547 26 1 -0.4850 0.8368 -0.0738 27 1 -0.2624 -2.5755 -1.3627 28 1 0.4856 -4.1461 -0.9861 29 1 2.4774 -2.4657 -2.0611 30 1 3.0359 -2.7140 -4.3140 31 1 2.6286 -1.7076 -6.7594 32 1 1.4725 -2.6555 -7.8391 33 1 4.4301 -3.0229 -5.4442 34 1 5.0748 -3.4366 -7.0542 35 1 4.2914 -5.4003 -4.8495 36 1 5.9441 -5.0303 -5.3973 37 1 5.3327 -5.8829 -7.5646 38 1 3.3229 -7.1791 -7.8450 39 1 2.8059 -6.6182 -6.2367 40 1 1.7398 -5.2283 -7.9564 41 1 3.3264 -4.8700 -8.6870 42 1 1.6886 -4.5402 0.9955 43 1 2.6455 -3.1817 1.7955 44 1 0.4929 -1.8989 2.1911 45 1 -0.4637 -3.2576 1.3910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597439952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = 13.031669 kcal Electronic energy + Delta-G solvation = -24065.386592 eV Core-core repulsion = 20697.776999 eV Total energy + Delta-G solvation = -3367.609592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20655 -38.81915 -36.77367 -35.85207 -33.25899 -32.37995 -32.02325 -31.13077 -28.36545 -26.14273 -25.19772 -23.34457 -22.52446 -21.96709 -21.15664 -20.23219 -19.42262 -19.22281 -17.66040 -16.58963 -15.89255 -15.58557 -14.88449 -14.79742 -14.67262 -14.62774 -14.37793 -14.09172 -13.79711 -13.51834 -13.01572 -12.79450 -12.61985 -12.57409 -12.14062 -11.98679 -11.61480 -11.49882 -11.45233 -11.05256 -10.98178 -10.80975 -10.63566 -10.55523 -10.24388 -10.16695 -9.74301 -9.49126 -8.95740 -8.57942 -8.52351 -8.50389 -8.26598 -7.82062 -6.11850 -4.21227 3.15343 3.20611 3.29870 3.31314 3.51125 3.96982 4.12912 4.30284 4.51364 4.61683 4.69600 4.77970 4.90172 4.93687 5.15741 5.17602 5.18393 5.32375 5.41067 5.50597 5.57903 5.66472 5.68163 5.77847 5.86850 5.96950 6.02272 6.05621 6.06879 6.32337 6.49614 6.58511 6.72692 6.81686 6.83932 6.91416 7.09226 7.19189 7.32900 7.40801 7.44495 7.64911 7.76327 8.31678 8.73969 8.80823 9.26769 9.45971 10.95746 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.003858 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.617785 B = 7255.622239 C = 7682.395570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.184 3.816 11 N -0.710 5.710 12 C 0.701 3.299 13 O -0.606 6.606 14 N -0.723 5.723 15 C 0.127 3.873 16 H 0.135 0.865 17 C -0.191 4.191 18 C -0.141 4.141 19 C -0.117 4.117 20 C 0.060 3.940 21 N -0.686 5.686 22 C 0.059 3.941 23 C -0.116 4.116 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.400 0.600 30 H 0.393 0.607 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.337 0.663 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 -7.382 -13.799 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.363 5.363 12 C 0.401 3.599 13 O -0.486 6.486 14 N -0.378 5.378 15 C 0.019 3.981 16 H 0.153 0.847 17 C -0.230 4.230 18 C -0.143 4.143 19 C -0.157 4.157 20 C -0.070 4.070 21 N -0.314 5.314 22 C -0.071 4.071 23 C -0.155 4.155 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.236 0.764 30 H 0.228 0.772 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.286 -8.284 -13.360 17.326 hybrid contribution 0.917 2.483 -0.406 2.677 sum 8.203 -5.802 -13.765 17.042 Atomic orbital electron populations 1.69979 1.05929 1.26918 1.47555 1.24978 0.94737 0.98853 0.94164 0.86670 0.80018 0.83677 0.78110 1.20734 1.21129 1.19770 1.20267 0.92832 0.88622 1.52468 0.92219 1.19034 0.98282 0.93941 0.85987 1.20714 0.91489 0.96597 0.85247 1.45111 1.22322 1.62656 1.06235 1.15992 0.83544 0.79614 0.80786 1.90845 1.23719 1.50509 1.83558 1.44521 1.20528 1.65842 1.06862 1.21390 0.98129 0.99955 0.78627 0.84730 1.23594 1.03322 0.94673 1.01386 1.21986 0.93342 0.97225 1.01703 1.21793 0.93883 0.99400 1.00593 1.22029 1.01337 0.88528 0.95084 1.60489 1.10136 1.46868 1.13915 1.22037 0.88718 0.95820 1.00510 1.21845 1.02065 0.94548 0.97085 1.23083 0.98346 0.95685 1.07671 1.22495 0.92586 1.01182 1.02713 0.92830 0.91689 0.94789 0.76447 0.77156 0.88601 0.88295 0.91357 0.91559 0.90493 0.90677 0.84533 0.90750 0.90600 0.91001 0.91551 0.91574 0.90437 0.89936 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.82 12.97 55.43 0.72 -23.10 16 2 C 0.08 2.01 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.50 -12.61 7.44 -34.44 -0.26 -12.86 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.66 1.70 -155.66 -0.27 0.40 16 10 C 0.18 4.21 5.75 -4.04 -0.02 4.19 16 11 N -0.71 -14.51 5.34 -65.22 -0.35 -14.86 16 12 C 0.70 13.95 8.57 -86.91 -0.74 13.20 16 13 O -0.61 -14.25 15.91 5.29 0.08 -14.17 16 14 N -0.72 -10.94 5.35 -58.77 -0.31 -11.25 16 15 C 0.13 1.69 6.11 -68.02 -0.42 1.27 16 16 H 0.14 2.03 7.40 -51.93 -0.38 1.65 16 17 C -0.19 -2.08 9.93 -26.84 -0.27 -2.35 16 18 C -0.14 -1.42 2.02 -154.54 -0.31 -1.73 16 19 C -0.12 -1.07 5.64 -26.48 -0.15 -1.22 16 20 C 0.06 0.57 6.56 -3.74 -0.02 0.55 16 21 N -0.69 -6.27 6.82 -113.62 -0.77 -7.04 16 22 C 0.06 0.53 6.56 -3.74 -0.02 0.51 16 23 C -0.12 -1.01 5.83 -26.49 -0.15 -1.16 16 24 C -0.21 -4.40 9.88 -26.74 -0.26 -4.67 16 25 C -0.15 -3.45 9.51 -26.73 -0.25 -3.71 16 26 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 27 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.03 0.76 7.94 -51.93 -0.41 0.35 16 29 H 0.40 7.67 7.47 -40.82 -0.30 7.36 16 30 H 0.39 5.11 6.86 -40.82 -0.28 4.83 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 2.57 8.81 -39.29 -0.35 2.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 45 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -29.31 362.76 -10.94 -40.25 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -7.50 Total: 15.34 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.25 Total: -5.66 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.72 Total: -56.26 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.31 -10.94 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597439952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.282 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds