Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99730 * 2 1 4 4 H 1.48502 * 109.46946 * 269.99489 * 3 2 1 5 5 H 1.48491 * 109.47237 * 30.00265 * 3 2 1 6 6 H 1.48507 * 109.46686 * 150.00176 * 3 2 1 7 7 C 1.37873 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00585 * 172.92705 * 7 2 1 9 9 C 1.50706 * 119.99930 * 352.92571 * 7 2 1 10 10 C 1.53001 * 115.54869 * 84.53153 * 9 7 2 11 11 N 1.46498 * 109.47018 * 39.68373 * 10 9 7 12 12 C 1.34780 * 119.99633 * 181.14502 * 11 10 9 13 13 O 1.21585 * 119.99967 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99857 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99939 * 179.97438 * 14 12 11 16 16 H 1.09003 * 115.55423 * 350.70235 * 15 14 12 17 17 C 1.53060 * 117.50768 * 136.46366 * 15 14 12 18 18 C 1.52724 * 59.94278 * 107.46462 * 17 15 14 19 19 C 1.53231 * 117.83823 * 252.26615 * 18 17 15 20 20 C 1.53251 * 108.62932 * 163.02074 * 19 18 17 21 21 N 1.46822 * 109.44795 * 55.57147 * 20 19 18 22 22 C 1.46811 * 111.58494 * 295.18072 * 21 20 19 23 23 C 1.53220 * 117.84713 * 107.74356 * 18 17 15 24 24 C 1.52992 * 117.51713 * 230.23426 * 9 7 2 25 25 C 1.52998 * 60.00155 * 107.47947 * 24 9 7 26 26 H 0.97004 * 119.99877 * 5.03824 * 1 2 3 27 27 H 1.08998 * 109.47173 * 279.68095 * 10 9 7 28 28 H 1.08999 * 109.46672 * 159.68234 * 10 9 7 29 29 H 0.96997 * 120.00448 * 1.14135 * 11 10 9 30 30 H 0.96997 * 119.99486 * 359.97438 * 14 12 11 31 31 H 1.08999 * 117.50099 * 359.97438 * 17 15 14 32 32 H 1.08993 * 117.50647 * 214.94052 * 17 15 14 33 33 H 1.08998 * 109.60904 * 43.28183 * 19 18 17 34 34 H 1.08997 * 109.61289 * 282.76964 * 19 18 17 35 35 H 1.09000 * 109.47801 * 295.58057 * 20 19 18 36 36 H 1.08998 * 109.48148 * 175.56386 * 20 19 18 37 37 H 1.00900 * 110.99802 * 59.56319 * 21 20 19 38 38 H 1.08994 * 109.47455 * 184.81233 * 22 21 20 39 39 H 1.09003 * 109.46971 * 304.82644 * 22 21 20 40 40 H 1.09002 * 109.60400 * 316.72045 * 23 18 17 41 41 H 1.09001 * 109.60628 * 77.22926 * 23 18 17 42 42 H 1.09001 * 117.49775 * 214.96840 * 24 9 7 43 43 H 1.09003 * 117.50478 * 359.97438 * 24 9 7 44 44 H 1.09000 * 117.50390 * 252.50897 * 25 24 9 45 45 H 1.09001 * 117.49979 * 107.48491 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1157 9 6 1.2596 -2.4943 0.1596 10 6 0.6734 -3.0816 -1.1258 11 7 1.6225 -2.8933 -2.2258 12 6 1.3077 -3.3143 -3.4669 13 8 0.2363 -3.8507 -3.6733 14 7 2.1810 -3.1416 -4.4789 15 6 1.8391 -3.5997 -5.8277 16 1 0.9372 -4.2071 -5.9034 17 6 2.1621 -2.6640 -6.9951 18 6 2.9919 -3.9271 -6.7750 19 6 4.4203 -3.7617 -6.2456 20 6 4.9018 -5.1126 -5.7055 21 7 4.7812 -6.1304 -6.7568 22 6 3.3794 -6.3608 -7.1272 23 6 2.8022 -5.0882 -7.7565 24 6 1.7703 -3.4759 1.2162 25 6 0.4721 -2.7023 1.4547 26 1 -0.4850 0.8368 -0.0738 27 1 -0.2624 -2.5755 -1.3627 28 1 0.4856 -4.1461 -0.9861 29 1 2.4774 -2.4657 -2.0611 30 1 3.0359 -2.7140 -4.3140 31 1 2.6286 -1.7076 -6.7594 32 1 1.4725 -2.6555 -7.8391 33 1 4.4301 -3.0229 -5.4442 34 1 5.0748 -3.4366 -7.0542 35 1 4.2914 -5.4003 -4.8495 36 1 5.9441 -5.0303 -5.3973 37 1 5.3327 -5.8829 -7.5646 38 1 3.3229 -7.1791 -7.8450 39 1 2.8059 -6.6182 -6.2367 40 1 1.7398 -5.2283 -7.9564 41 1 3.3264 -4.8700 -8.6870 42 1 1.6886 -4.5402 0.9955 43 1 2.6455 -3.1817 1.7955 44 1 0.4929 -1.8989 2.1911 45 1 -0.4637 -3.2576 1.3910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597439952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -6.829653 kcal Electronic energy + Delta-G solvation = -24066.247843 eV Core-core repulsion = 20697.776999 eV Total energy + Delta-G solvation = -3368.470844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35148 -40.14606 -38.50142 -36.85387 -34.95830 -34.01089 -33.64553 -31.89492 -29.22494 -27.93251 -27.05832 -24.10379 -23.49288 -22.97854 -22.86856 -21.71541 -21.24876 -20.14177 -19.17648 -18.11453 -17.37626 -16.66630 -16.56684 -16.30146 -15.98628 -15.63397 -15.57138 -15.25832 -14.96563 -14.63757 -14.47678 -14.35201 -13.88332 -13.65953 -13.47702 -13.34967 -12.92189 -12.85759 -12.83614 -12.47231 -12.33722 -12.19522 -12.01483 -11.79517 -11.53298 -11.39446 -11.27333 -11.08234 -10.82463 -10.46187 -10.18351 -9.86783 -9.36764 -9.23045 -8.09172 -6.23006 1.41637 1.46072 1.53820 1.77916 2.15359 2.42315 2.85629 3.17562 3.32996 3.40979 3.55897 3.67225 3.75306 3.88112 3.93715 4.19972 4.27247 4.39185 4.42924 4.51751 4.54119 4.68882 4.73600 4.79579 4.80149 4.83712 4.89857 4.97822 5.01520 5.04819 5.08009 5.11727 5.26929 5.27417 5.28658 5.48896 5.60034 5.63116 5.75402 5.79041 6.09190 6.15316 6.38228 6.58372 6.84703 7.23738 7.47063 7.69021 8.98268 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.003858 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.617785 B = 7255.622239 C = 7682.395570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.005 3.995 10 C 0.198 3.802 11 N -0.709 5.709 12 C 0.698 3.302 13 O -0.647 6.647 14 N -0.704 5.704 15 C 0.088 3.912 16 H 0.110 0.890 17 C -0.177 4.177 18 C -0.115 4.115 19 C -0.115 4.115 20 C 0.063 3.937 21 N -0.691 5.691 22 C 0.061 3.939 23 C -0.114 4.114 24 C -0.180 4.180 25 C -0.162 4.162 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.407 0.593 30 H 0.406 0.594 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.350 0.650 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.076 -7.402 -15.319 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.005 3.995 10 C 0.073 3.927 11 N -0.362 5.362 12 C 0.397 3.603 13 O -0.530 6.530 14 N -0.359 5.359 15 C -0.019 4.019 16 H 0.128 0.872 17 C -0.216 4.216 18 C -0.117 4.117 19 C -0.155 4.155 20 C -0.067 4.067 21 N -0.320 5.320 22 C -0.069 4.069 23 C -0.153 4.153 24 C -0.217 4.217 25 C -0.200 4.200 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.244 0.756 30 H 0.243 0.757 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.169 0.831 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.980 -8.300 -14.917 19.774 hybrid contribution 0.112 2.419 0.024 2.422 sum 10.092 -5.881 -14.893 18.927 Atomic orbital electron populations 1.70121 1.07431 1.27246 1.49369 1.25677 0.95291 1.01948 0.94171 0.85704 0.78947 0.79809 0.78055 1.20336 1.21945 1.18728 1.20557 0.93183 0.89237 1.51161 0.91538 1.19109 0.99371 0.94676 0.86378 1.20370 0.90368 0.96032 0.85928 1.44927 1.22098 1.63039 1.06129 1.16150 0.83598 0.79238 0.81265 1.90811 1.25721 1.52316 1.84187 1.44307 1.20017 1.64950 1.06610 1.21501 0.99569 1.02461 0.78347 0.87174 1.23654 1.03240 0.94925 0.99805 1.22070 0.92831 0.97226 0.99599 1.21829 0.93292 0.99162 1.01182 1.21967 1.01561 0.88710 0.94475 1.60448 1.10219 1.46875 1.14460 1.21995 0.88496 0.96580 0.99811 1.21877 1.02409 0.93617 0.97371 1.23079 0.97246 0.96266 1.05107 1.22431 0.93960 1.01471 1.02107 0.93329 0.95816 0.94513 0.75641 0.75689 0.88157 0.87082 0.91560 0.89493 0.93069 0.89403 0.83088 0.89152 0.93133 0.91096 0.89367 0.89429 0.89570 0.91749 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.68 12.97 21.45 0.28 -50.40 16 2 C 0.03 1.58 5.39 84.65 0.46 2.03 16 3 Si 0.95 41.02 29.55 68.60 2.03 43.05 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.50 -24.93 7.44 25.60 0.19 -24.74 16 8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.25 1.70 -52.93 -0.09 0.16 16 10 C 0.20 9.30 5.75 86.38 0.50 9.80 16 11 N -0.71 -29.28 5.34 -478.53 -2.55 -31.83 16 12 C 0.70 28.37 8.57 179.05 1.53 29.90 16 13 O -0.65 -31.62 15.91 -3.98 -0.06 -31.69 16 14 N -0.70 -21.25 5.35 -458.10 -2.45 -23.70 16 15 C 0.09 2.32 6.11 44.93 0.27 2.60 16 16 H 0.11 3.47 7.40 -2.39 -0.02 3.46 16 17 C -0.18 -3.54 9.93 30.52 0.30 -3.23 16 18 C -0.12 -2.11 2.02 -52.20 -0.11 -2.21 16 19 C -0.12 -1.81 5.64 30.76 0.17 -1.64 16 20 C 0.06 1.07 6.56 86.40 0.57 1.64 16 21 N -0.69 -11.07 6.82 -513.38 -3.50 -14.57 16 22 C 0.06 1.01 6.56 86.40 0.57 1.57 16 23 C -0.11 -1.71 5.83 30.75 0.18 -1.54 16 24 C -0.18 -7.24 9.88 30.59 0.30 -6.94 16 25 C -0.16 -7.38 9.51 30.59 0.29 -7.09 16 26 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 27 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.67 7.94 -2.39 -0.02 1.65 16 29 H 0.41 15.45 7.47 -92.71 -0.69 14.76 16 30 H 0.41 10.15 6.86 -92.71 -0.64 9.52 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.08 6.18 -2.39 -0.01 1.07 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.35 4.19 8.81 -89.69 -0.79 3.40 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.09 8.12 -2.39 -0.02 1.08 16 40 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 3.16 8.08 -2.39 -0.02 3.14 16 43 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -64.20 362.76 -2.24 -66.44 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -1.12 Total: 42.39 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.14 Total: 0.31 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -8.23 Total: -120.50 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.06 Total: -31.69 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -64.20 -2.24 -66.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597439952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.606 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds