Wall clock time and date at job start Tue Mar 31 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31883 * 119.62246 * 2 1 4 4 C 1.31850 * 121.72710 * 180.31284 * 3 2 1 5 5 C 1.38223 * 120.76428 * 359.70504 * 4 3 2 6 6 C 1.38626 * 119.16166 * 0.02562 * 5 4 3 7 7 C 1.38190 * 119.61364 * 179.73480 * 2 1 3 8 8 C 1.50693 * 120.42101 * 359.97325 * 7 2 1 9 9 N 1.46901 * 109.47360 * 79.72693 * 8 7 2 10 10 C 1.46899 * 111.00076 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47555 * 304.99556 * 11 10 9 13 13 O 1.42901 * 109.47612 * 65.00079 * 11 10 9 14 14 C 1.53000 * 109.47000 * 185.00066 * 11 10 9 15 15 N 1.46905 * 109.47114 * 180.02562 * 14 11 10 16 16 C 1.46900 * 110.99850 * 293.94896 * 15 14 11 17 17 C 1.46906 * 111.00051 * 169.99929 * 15 14 11 18 18 C 1.50699 * 109.47140 * 189.99841 * 17 15 14 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47229 * 89.99965 * 22 20 18 24 24 H 1.48500 * 109.46876 * 209.99805 * 22 20 18 25 25 H 1.48499 * 109.47161 * 329.99530 * 22 20 18 26 26 H 1.09001 * 109.47121 * 270.26659 * 1 2 3 27 27 H 1.08998 * 109.47422 * 30.26562 * 1 2 3 28 28 H 1.09004 * 109.47441 * 150.27067 * 1 2 3 29 29 H 1.08004 * 119.61523 * 179.72699 * 4 3 2 30 30 H 1.08006 * 120.41611 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.79092 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47183 * 319.72487 * 8 7 2 33 33 H 1.09001 * 109.47380 * 199.72837 * 8 7 2 34 34 H 1.00896 * 110.99720 * 56.04006 * 9 8 7 35 35 H 1.08995 * 109.47186 * 60.00137 * 10 9 8 36 36 H 1.08998 * 109.47052 * 299.99451 * 10 9 8 37 37 H 0.96697 * 113.99735 * 59.99435 * 13 11 10 38 38 H 1.08997 * 109.47704 * 60.00204 * 14 11 10 39 39 H 1.09000 * 109.47058 * 299.99530 * 14 11 10 40 40 H 1.08996 * 109.47030 * 296.04770 * 16 15 14 41 41 H 1.08999 * 109.46702 * 56.04909 * 16 15 14 42 42 H 1.08996 * 109.46890 * 176.04778 * 16 15 14 43 43 H 1.09004 * 109.47040 * 309.99779 * 17 15 14 44 44 H 1.09000 * 109.47033 * 69.99731 * 17 15 14 45 45 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1949 -0.0061 5 6 4.2266 0.0340 -0.0067 6 6 3.5765 -1.1904 -0.0013 7 6 2.1898 -1.2014 0.0056 8 6 1.4371 -2.5069 0.0122 9 7 0.9780 -2.8144 -1.3489 10 6 0.2379 -4.0829 -1.3808 11 6 -0.2235 -4.3682 -2.8114 12 1 -0.7983 -3.5203 -3.1838 13 8 0.9168 -4.5746 -3.6476 14 6 -1.0990 -5.6228 -2.8242 15 7 -1.5416 -5.8971 -4.1979 16 6 -2.4388 -4.8399 -4.6829 17 6 -2.1829 -7.2155 -4.2911 18 6 -2.4005 -7.5669 -5.7403 19 1 -2.0936 -6.8795 -6.5146 20 6 -2.9925 -8.7656 -6.0775 21 7 -3.3667 -9.6026 -5.1345 22 14 -3.2617 -9.2016 -7.8739 23 1 -2.0737 -9.9275 -8.3905 24 1 -4.4628 -10.0658 -7.9989 25 1 -3.4626 -7.9580 -8.6603 26 1 -0.3633 0.0048 1.0277 27 1 -0.3634 0.8876 -0.5179 28 1 -0.3634 -0.8924 -0.5096 29 1 3.9753 2.1528 -0.0104 30 1 5.3056 0.0802 -0.0122 31 1 4.1366 -2.1138 -0.0012 32 1 0.5766 -2.4268 0.6765 33 1 2.0938 -3.3031 0.3627 34 1 1.7516 -2.8301 -1.9965 35 1 -0.6308 -4.0133 -0.7264 36 1 0.8860 -4.8903 -1.0399 37 1 1.4756 -5.3152 -3.3749 38 1 -1.9689 -5.4655 -2.1866 39 1 -0.5242 -6.4708 -2.4520 40 1 -3.3474 -4.8300 -4.0809 41 1 -1.9393 -3.8744 -4.6028 42 1 -2.6954 -5.0309 -5.7249 43 1 -1.5413 -7.9652 -3.8279 44 1 -3.1427 -7.1899 -3.7753 45 1 -3.7834 -10.4457 -5.3718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600761580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:50 Heat of formation + Delta-G solvation = -14.278113 kcal Electronic energy + Delta-G solvation = -22931.717041 eV Core-core repulsion = 19562.923208 eV Total energy + Delta-G solvation = -3368.793833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61686 -38.36968 -36.29510 -35.21924 -33.23355 -32.69033 -32.47774 -29.79411 -28.06076 -27.16019 -26.49553 -25.01942 -23.28151 -22.66045 -21.75302 -21.25520 -20.15086 -17.32577 -16.68313 -16.57096 -16.23961 -15.96801 -15.35472 -15.13350 -14.85110 -14.57614 -14.26265 -14.12475 -13.77031 -13.44728 -13.31749 -13.13157 -12.91444 -12.61867 -12.48613 -12.25924 -12.00538 -11.88049 -11.49907 -11.32571 -11.12486 -10.89300 -10.75808 -10.63535 -10.29377 -10.08394 -10.00646 -9.72224 -9.60871 -9.15980 -9.06164 -8.62514 -8.42966 -7.19232 -6.02513 -4.03375 0.81432 1.00526 3.33059 3.38670 3.42845 3.44475 3.96753 4.12320 4.42546 4.45559 4.49653 4.64430 4.66532 4.70914 4.89784 5.09369 5.13855 5.20833 5.28755 5.34773 5.38620 5.40581 5.46881 5.50079 5.55333 5.63567 5.73078 5.88906 5.97316 6.00145 6.05828 6.20715 6.32683 6.41287 6.46102 6.74339 6.79523 7.17205 7.26967 7.33124 7.76316 7.80625 7.94991 8.10303 8.20934 8.55988 9.04813 9.60886 11.08474 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.002329 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.321429 B =12019.409090 C =12088.772883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.154 3.846 3 N -0.490 5.490 4 C 0.101 3.899 5 C -0.183 4.183 6 C -0.067 4.067 7 C -0.136 4.136 8 C 0.102 3.898 9 N -0.679 5.679 10 C 0.027 3.973 11 C 0.114 3.886 12 H 0.104 0.896 13 O -0.546 6.546 14 C 0.025 3.975 15 N -0.530 5.530 16 C 0.037 3.963 17 C 0.193 3.807 18 C -0.504 4.504 19 H 0.064 0.936 20 C 0.053 3.947 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.350 0.650 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.367 0.633 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.027 0.973 44 H -0.011 1.011 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 17.013 13.954 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.016 3.984 3 N -0.199 5.199 4 C -0.056 4.056 5 C -0.203 4.203 6 C -0.094 4.094 7 C -0.139 4.139 8 C -0.028 4.028 9 N -0.311 5.311 10 C -0.102 4.102 11 C 0.054 3.946 12 H 0.122 0.878 13 O -0.350 6.350 14 C -0.105 4.105 15 N -0.254 5.254 16 C -0.111 4.111 17 C 0.068 3.932 18 C -0.543 4.543 19 H 0.082 0.918 20 C -0.148 4.148 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.198 1.198 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.171 0.829 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.213 0.787 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.007 0.993 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.772 18.489 13.408 25.694 hybrid contribution 0.645 -2.312 0.134 2.404 sum 12.417 16.177 13.542 24.480 Atomic orbital electron populations 1.20853 0.88572 1.04761 1.02719 1.21202 0.97212 0.87414 0.92599 1.67576 1.10003 1.29434 1.12880 1.22743 0.89573 0.98433 0.94852 1.22081 1.01400 0.93440 1.03378 1.21529 0.93808 0.98535 0.95513 1.20628 0.93995 0.96324 1.02913 1.20798 0.98024 0.92062 0.91870 1.60404 1.30595 1.33764 1.06330 1.22726 0.98579 0.89759 0.99181 1.21990 0.87069 0.97891 0.87691 0.87834 1.86608 1.38176 1.54322 1.55848 1.22695 0.98145 0.97279 0.92391 1.62030 1.41354 1.04407 1.17577 1.22240 0.93504 0.93923 1.01460 1.19748 0.92125 0.83822 0.97548 1.21170 1.38244 1.02888 0.91991 0.91796 1.25001 0.95761 0.96341 0.97655 1.69960 1.41927 1.09965 1.32218 0.86482 0.77555 0.78356 0.84930 1.20631 1.21365 1.19828 0.90891 0.90683 0.88665 0.82897 0.84901 0.85072 0.89723 0.94334 0.83099 0.90149 0.94810 0.78708 0.95278 0.91376 0.97234 0.93380 0.90863 0.95460 0.99293 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.44 36.00 0.34 -0.69 16 2 C 0.15 1.63 6.78 -82.59 -0.56 1.07 16 3 N -0.49 -5.53 10.27 -9.47 -0.10 -5.63 16 4 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 5 C -0.18 -1.41 10.11 -39.44 -0.40 -1.81 16 6 C -0.07 -0.55 9.82 -39.28 -0.39 -0.94 16 7 C -0.14 -1.27 5.41 -104.48 -0.57 -1.84 16 8 C 0.10 0.86 4.95 -4.98 -0.02 0.84 16 9 N -0.68 -6.72 5.81 -115.06 -0.67 -7.39 16 10 C 0.03 0.29 5.36 -3.83 -0.02 0.27 16 11 C 0.11 1.56 3.08 -26.73 -0.08 1.47 16 12 H 0.10 1.55 6.47 -51.93 -0.34 1.21 16 13 O -0.55 -8.04 12.72 -35.23 -0.45 -8.49 16 14 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 15 N -0.53 -11.40 4.62 -244.36 -1.13 -12.53 16 16 C 0.04 0.74 9.16 60.06 0.55 1.29 16 17 C 0.19 5.03 4.72 -4.97 -0.02 5.01 16 18 C -0.50 -14.31 8.52 -34.44 -0.29 -14.60 16 19 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 20 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.89 6.33 -51.93 -0.33 0.57 16 29 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 31 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 32 H 0.08 0.68 7.31 -51.93 -0.38 0.30 16 33 H 0.04 0.30 8.03 -51.93 -0.42 -0.12 16 34 H 0.35 3.68 8.28 -39.29 -0.33 3.35 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.37 4.37 9.04 45.56 0.41 4.78 16 38 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.05 0.84 6.30 -51.93 -0.33 0.51 16 42 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 43 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 44 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -32.37 367.21 -9.48 -41.85 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.62 Total: 3.35 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.78 Total: -7.39 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -1.16 Total: -51.66 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.45 Total: -8.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.37 -9.48 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600761580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.574 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds