Wall clock time and date at job start Tue Mar 31 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31883 * 119.62246 * 2 1 4 4 C 1.31850 * 121.72710 * 180.31284 * 3 2 1 5 5 C 1.38223 * 120.76428 * 359.70504 * 4 3 2 6 6 C 1.38626 * 119.16166 * 0.02562 * 5 4 3 7 7 C 1.38190 * 119.61364 * 179.73480 * 2 1 3 8 8 C 1.50693 * 120.42101 * 359.97325 * 7 2 1 9 9 N 1.46901 * 109.47360 * 79.72693 * 8 7 2 10 10 C 1.46899 * 111.00076 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47555 * 304.99556 * 11 10 9 13 13 O 1.42901 * 109.47612 * 65.00079 * 11 10 9 14 14 C 1.53000 * 109.47000 * 185.00066 * 11 10 9 15 15 N 1.46905 * 109.47114 * 180.02562 * 14 11 10 16 16 C 1.46900 * 110.99850 * 293.94896 * 15 14 11 17 17 C 1.46906 * 111.00051 * 169.99929 * 15 14 11 18 18 C 1.50699 * 109.47140 * 189.99841 * 17 15 14 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47229 * 89.99965 * 22 20 18 24 24 H 1.48500 * 109.46876 * 209.99805 * 22 20 18 25 25 H 1.48499 * 109.47161 * 329.99530 * 22 20 18 26 26 H 1.09001 * 109.47121 * 270.26659 * 1 2 3 27 27 H 1.08998 * 109.47422 * 30.26562 * 1 2 3 28 28 H 1.09004 * 109.47441 * 150.27067 * 1 2 3 29 29 H 1.08004 * 119.61523 * 179.72699 * 4 3 2 30 30 H 1.08006 * 120.41611 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.79092 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47183 * 319.72487 * 8 7 2 33 33 H 1.09001 * 109.47380 * 199.72837 * 8 7 2 34 34 H 1.00896 * 110.99720 * 56.04006 * 9 8 7 35 35 H 1.08995 * 109.47186 * 60.00137 * 10 9 8 36 36 H 1.08998 * 109.47052 * 299.99451 * 10 9 8 37 37 H 0.96697 * 113.99735 * 59.99435 * 13 11 10 38 38 H 1.08997 * 109.47704 * 60.00204 * 14 11 10 39 39 H 1.09000 * 109.47058 * 299.99530 * 14 11 10 40 40 H 1.08996 * 109.47030 * 296.04770 * 16 15 14 41 41 H 1.08999 * 109.46702 * 56.04909 * 16 15 14 42 42 H 1.08996 * 109.46890 * 176.04778 * 16 15 14 43 43 H 1.09004 * 109.47040 * 309.99779 * 17 15 14 44 44 H 1.09000 * 109.47033 * 69.99731 * 17 15 14 45 45 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1949 -0.0061 5 6 4.2266 0.0340 -0.0067 6 6 3.5765 -1.1904 -0.0013 7 6 2.1898 -1.2014 0.0056 8 6 1.4371 -2.5069 0.0122 9 7 0.9780 -2.8144 -1.3489 10 6 0.2379 -4.0829 -1.3808 11 6 -0.2235 -4.3682 -2.8114 12 1 -0.7983 -3.5203 -3.1838 13 8 0.9168 -4.5746 -3.6476 14 6 -1.0990 -5.6228 -2.8242 15 7 -1.5416 -5.8971 -4.1979 16 6 -2.4388 -4.8399 -4.6829 17 6 -2.1829 -7.2155 -4.2911 18 6 -2.4005 -7.5669 -5.7403 19 1 -2.0936 -6.8795 -6.5146 20 6 -2.9925 -8.7656 -6.0775 21 7 -3.3667 -9.6026 -5.1345 22 14 -3.2617 -9.2016 -7.8739 23 1 -2.0737 -9.9275 -8.3905 24 1 -4.4628 -10.0658 -7.9989 25 1 -3.4626 -7.9580 -8.6603 26 1 -0.3633 0.0048 1.0277 27 1 -0.3634 0.8876 -0.5179 28 1 -0.3634 -0.8924 -0.5096 29 1 3.9753 2.1528 -0.0104 30 1 5.3056 0.0802 -0.0122 31 1 4.1366 -2.1138 -0.0012 32 1 0.5766 -2.4268 0.6765 33 1 2.0938 -3.3031 0.3627 34 1 1.7516 -2.8301 -1.9965 35 1 -0.6308 -4.0133 -0.7264 36 1 0.8860 -4.8903 -1.0399 37 1 1.4756 -5.3152 -3.3749 38 1 -1.9689 -5.4655 -2.1866 39 1 -0.5242 -6.4708 -2.4520 40 1 -3.3474 -4.8300 -4.0809 41 1 -1.9393 -3.8744 -4.6028 42 1 -2.6954 -5.0309 -5.7249 43 1 -1.5413 -7.9652 -3.8279 44 1 -3.1427 -7.1899 -3.7753 45 1 -3.7834 -10.4457 -5.3718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600761580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:50 Heat of formation + Delta-G solvation = -39.543706 kcal Electronic energy + Delta-G solvation = -22932.812640 eV Core-core repulsion = 19562.923208 eV Total energy + Delta-G solvation = -3369.889432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27129 -39.58235 -37.55246 -36.37268 -34.61320 -33.87467 -33.43074 -31.02767 -29.19298 -28.65495 -27.65632 -26.32510 -24.64319 -23.34724 -22.64295 -22.38559 -21.70314 -18.56979 -18.04519 -17.41859 -17.20107 -17.10702 -16.70711 -16.31710 -15.97336 -15.77674 -15.59793 -15.18462 -14.95803 -14.68490 -14.29415 -13.96035 -13.87848 -13.78492 -13.52676 -13.28442 -13.22218 -13.04825 -12.91209 -12.71211 -12.53877 -12.51104 -12.37121 -12.13149 -12.00132 -11.58870 -11.40229 -10.80608 -10.66091 -10.61597 -10.36100 -9.75068 -9.35990 -8.95125 -8.20879 -6.30516 0.16380 0.36714 1.41055 1.42354 1.53644 2.40140 2.74328 3.07205 3.11868 3.44880 3.52082 3.72951 3.80595 3.90033 4.02555 4.06108 4.14683 4.17371 4.28762 4.46340 4.53525 4.58183 4.61226 4.71374 4.74223 4.75075 4.76190 4.80728 4.84005 4.92549 5.07378 5.16853 5.18435 5.26271 5.29610 5.33181 5.35556 5.64999 5.82625 5.98613 6.06097 6.32847 6.39177 6.64806 6.85673 6.98302 7.09675 7.39194 8.89994 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.002329 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.321429 B =12019.409090 C =12088.772883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.130 3.870 3 N -0.521 5.521 4 C 0.087 3.913 5 C -0.180 4.180 6 C -0.073 4.073 7 C -0.144 4.144 8 C 0.107 3.893 9 N -0.683 5.683 10 C 0.040 3.960 11 C 0.128 3.872 12 H 0.093 0.907 13 O -0.561 6.561 14 C 0.024 3.976 15 N -0.540 5.540 16 C 0.042 3.958 17 C 0.208 3.792 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.266 1.266 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.010 0.990 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.005 0.995 44 H -0.039 1.039 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 17.481 13.982 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.007 4.007 3 N -0.231 5.231 4 C -0.070 4.070 5 C -0.199 4.199 6 C -0.099 4.099 7 C -0.146 4.146 8 C -0.022 4.022 9 N -0.315 5.315 10 C -0.090 4.090 11 C 0.068 3.932 12 H 0.111 0.889 13 O -0.367 6.367 14 C -0.105 4.105 15 N -0.264 5.264 16 C -0.106 4.106 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.190 1.190 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.227 0.773 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.023 0.977 44 H -0.022 1.022 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.176 18.975 13.453 26.733 hybrid contribution 0.282 -2.405 0.181 2.428 sum 13.458 16.570 13.633 25.329 Atomic orbital electron populations 1.20810 0.88330 1.04122 1.03172 1.21425 0.97748 0.87941 0.93621 1.67554 1.11362 1.30129 1.14070 1.23209 0.89135 1.00068 0.94600 1.22415 1.02820 0.92788 1.01894 1.21871 0.93567 0.99719 0.94739 1.20728 0.94690 0.96101 1.03123 1.20777 0.98379 0.92050 0.90957 1.60352 1.30697 1.33284 1.07210 1.22514 0.99205 0.90557 0.96693 1.21793 0.86288 0.95475 0.89673 0.88880 1.86572 1.38433 1.55066 1.56639 1.22824 0.98809 0.99108 0.89792 1.61936 1.40819 1.02796 1.20812 1.22201 0.93739 0.94598 1.00111 1.19401 0.90482 0.85941 0.96045 1.21467 1.38483 1.03173 0.92965 0.92201 1.25908 0.95276 0.96173 1.02370 1.70077 1.42502 1.10427 1.34495 0.85390 0.77736 0.78282 0.79257 1.19802 1.20680 1.19044 0.89936 0.91539 0.88936 0.80846 0.82090 0.82957 0.89374 0.93019 0.83420 0.89434 0.93543 0.77306 0.94824 0.91269 0.97167 0.90575 0.92881 0.97686 1.02151 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.44 71.23 0.67 -1.27 16 2 C 0.13 2.68 6.78 42.54 0.29 2.97 16 3 N -0.52 -11.53 10.27 -183.89 -1.89 -13.42 16 4 C 0.09 1.43 11.18 84.69 0.95 2.38 16 5 C -0.18 -2.35 10.11 22.36 0.23 -2.13 16 6 C -0.07 -1.03 9.82 22.47 0.22 -0.81 16 7 C -0.14 -2.48 5.41 -19.77 -0.11 -2.58 16 8 C 0.11 1.60 4.95 85.55 0.42 2.02 16 9 N -0.68 -12.23 5.81 -517.95 -3.01 -15.24 16 10 C 0.04 0.75 5.36 86.30 0.46 1.22 16 11 C 0.13 3.31 3.08 30.59 0.09 3.40 16 12 H 0.09 2.64 6.47 -2.39 -0.02 2.62 16 13 O -0.56 -15.68 12.72 -148.98 -1.90 -17.58 16 14 C 0.02 0.79 4.62 86.30 0.40 1.19 16 15 N -0.54 -23.31 4.62 -927.03 -4.28 -27.59 16 16 C 0.04 1.66 9.16 127.69 1.17 2.83 16 17 C 0.21 11.13 4.72 85.56 0.40 11.53 16 18 C -0.52 -30.07 8.52 25.60 0.22 -29.85 16 19 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 20 C 0.00 0.03 5.46 84.65 0.46 0.50 16 21 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 22 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.68 6.33 -2.38 -0.02 1.67 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.09 1.25 7.31 -2.38 -0.02 1.23 16 33 H 0.05 0.65 8.03 -2.39 -0.02 0.63 16 34 H 0.35 6.63 8.28 -89.70 -0.74 5.89 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.38 8.42 9.04 -74.06 -0.67 7.75 16 38 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 2.57 6.30 -2.39 -0.02 2.56 16 42 H 0.05 2.29 6.86 -2.39 -0.02 2.27 16 43 H 0.01 0.29 7.93 -2.38 -0.02 0.27 16 44 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 45 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -70.04 367.21 -3.31 -73.35 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.43 Total: 18.42 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.88 Total: -8.61 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -8.90 Total: -112.36 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.90 Total: -17.58 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.04 -3.31 -73.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600761580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.808 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds