Wall clock time and date at job start Tue Mar 31 2020 06:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47378 * 270.00197 * 3 2 1 5 5 H 1.48506 * 109.46831 * 30.00041 * 3 2 1 6 6 H 1.48503 * 109.47043 * 149.99857 * 3 2 1 7 7 C 1.37880 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99845 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46494 * 119.99858 * 175.19660 * 16 14 13 18 18 C 1.50701 * 109.47331 * 180.02562 * 17 16 14 19 19 C 1.30525 * 124.45166 * 94.69597 * 18 17 16 20 20 C 1.51106 * 111.10672 * 179.88472 * 19 18 17 21 21 C 1.54637 * 104.77628 * 343.92901 * 20 19 18 22 22 C 1.51108 * 124.44707 * 275.00159 * 18 17 16 23 23 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 24 24 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 25 25 H 0.96994 * 120.00262 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46455 * 59.99990 * 9 7 2 27 27 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 28 28 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 29 29 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 30 30 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 31 31 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 32 32 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 33 33 H 1.09000 * 109.47197 * 299.99777 * 17 16 14 34 34 H 1.09003 * 109.47844 * 60.00002 * 17 16 14 35 35 H 1.08004 * 124.44464 * 359.97438 * 19 18 17 36 36 H 1.09000 * 110.52383 * 225.02080 * 20 19 18 37 37 H 1.08993 * 110.29259 * 102.72197 * 20 19 18 38 38 H 1.08993 * 111.03785 * 266.40751 * 21 20 19 39 39 H 1.09006 * 111.03461 * 142.47036 * 21 20 19 40 40 H 1.09005 * 110.38332 * 315.22389 * 22 18 17 41 41 H 1.09000 * 110.38547 * 77.48090 * 22 18 17 42 42 H 1.09002 * 109.63018 * 68.24833 * 23 13 12 43 43 H 1.09001 * 109.63196 * 188.83157 * 23 13 12 44 44 H 1.08993 * 109.49068 * 292.70728 * 24 10 9 45 45 H 1.09000 * 109.49095 * 52.78808 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4500 -2.6251 -0.2397 12 6 5.8897 -4.0829 -0.4125 13 7 5.4266 -4.8518 0.7527 14 6 6.2769 -5.6315 1.4494 15 8 5.8597 -6.3298 2.3530 16 7 7.5888 -5.6411 1.1409 17 6 8.5291 -6.4062 1.9635 18 6 9.9221 -6.2515 1.4098 19 6 10.7886 -5.3688 1.8267 20 6 12.0890 -5.4811 1.0654 21 6 12.0240 -6.8636 0.3755 22 6 10.4970 -7.0935 0.2945 23 6 4.0095 -4.7519 1.1337 24 6 3.6451 -3.2633 1.2491 25 1 -0.4850 0.8400 -0.0004 26 1 3.8751 -0.6804 0.8889 27 1 3.8745 -0.6799 -0.8911 28 1 5.9728 -2.1857 0.6099 29 1 5.6878 -2.0640 -1.1434 30 1 6.9768 -4.1325 -0.4753 31 1 5.4485 -4.4931 -1.3208 32 1 7.9104 -5.1415 0.3742 33 1 8.5022 -6.0339 2.9876 34 1 8.2482 -7.4594 1.9523 35 1 10.6011 -4.6531 2.6136 36 1 12.9370 -5.4374 1.7490 37 1 12.1610 -4.6883 0.3210 38 1 12.5031 -7.6286 0.9864 39 1 12.4672 -6.8254 -0.6196 40 1 10.2625 -8.1460 0.4539 41 1 10.1117 -6.7612 -0.6694 42 1 3.3910 -5.2253 0.3711 43 1 3.8528 -5.2440 2.0936 44 1 4.1929 -2.8150 2.0779 45 1 2.5739 -3.1649 1.4251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601627817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:48 Heat of formation + Delta-G solvation = 3.700231 kcal Electronic energy + Delta-G solvation = -23554.199398 eV Core-core repulsion = 20186.185164 eV Total energy + Delta-G solvation = -3368.014234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31084 -39.04330 -37.68127 -34.75470 -34.44136 -32.37611 -30.97722 -30.11761 -28.83806 -28.48017 -25.94281 -24.94241 -23.21117 -21.87772 -21.25888 -20.62453 -19.55872 -18.59851 -17.80811 -16.84621 -16.38680 -15.86399 -15.59834 -15.51351 -14.71178 -14.56829 -14.36353 -14.12268 -13.87610 -13.68211 -13.46365 -13.10024 -12.86052 -12.46845 -12.22459 -12.14031 -11.99396 -11.63439 -11.59034 -11.50384 -11.44405 -11.23068 -10.94566 -10.78657 -10.56011 -10.38184 -10.03996 -9.90705 -9.34454 -9.18035 -9.16692 -8.60935 -8.37245 -7.46651 -6.08931 -4.06935 1.62379 2.86890 3.25039 3.29228 3.33086 3.34141 3.96861 4.16232 4.20086 4.38125 4.60226 4.64056 4.72510 5.00052 5.12052 5.15690 5.21001 5.28923 5.32085 5.35185 5.37674 5.45585 5.51794 5.57825 5.62301 5.65009 5.76800 5.81799 5.87874 5.97785 6.07960 6.16102 6.36131 6.40004 6.50531 6.51416 6.60583 6.80430 6.92547 7.04393 7.52108 7.79223 7.94591 8.00897 8.59815 8.66401 8.99019 9.52269 11.03984 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002981 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.585811 B = 9389.531686 C =10075.687095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.626 5.626 14 C 0.707 3.293 15 O -0.596 6.596 16 N -0.747 5.747 17 C 0.189 3.811 18 C -0.157 4.157 19 C -0.138 4.138 20 C -0.103 4.103 21 C -0.125 4.125 22 C -0.092 4.092 23 C 0.134 3.866 24 C 0.050 3.950 25 H 0.264 0.736 26 H -0.012 1.012 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.395 0.605 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.025 0.975 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.837 -11.454 -0.003 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.092 4.092 12 C -0.004 4.004 13 N -0.363 5.363 14 C 0.408 3.592 15 O -0.474 6.474 16 N -0.405 5.405 17 C 0.065 3.935 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.140 4.140 21 C -0.163 4.163 22 C -0.129 4.129 23 C 0.011 3.989 24 C -0.079 4.079 25 H 0.074 0.926 26 H 0.006 0.994 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 23.126 -12.092 0.296 26.099 hybrid contribution 0.954 1.830 0.217 2.075 sum 24.081 -10.262 0.514 26.181 Atomic orbital electron populations 1.69885 1.06112 1.26901 1.50812 1.24898 0.94735 0.98846 0.94795 0.86869 0.80266 0.84074 0.78556 1.20131 1.21180 1.19374 1.21013 0.88594 0.94791 1.50586 0.89997 1.20172 0.97216 0.83808 0.95110 1.61891 1.09694 1.19197 1.34267 1.22433 0.90969 0.95006 1.00765 1.21735 0.97792 0.92044 0.88873 1.47418 1.10155 1.47445 1.31268 1.15834 0.80761 0.80522 0.82039 1.90891 1.76854 1.45576 1.34114 1.45289 1.05802 1.55312 1.34102 1.19725 0.83498 0.96619 0.93671 1.22071 0.95419 0.99244 0.99028 1.23326 0.95538 0.97802 0.99084 1.21387 0.96154 0.97717 0.98709 1.22445 0.95911 0.96989 1.00910 1.21288 0.94710 0.99702 0.97190 1.21833 0.78508 0.97054 1.01520 1.22497 1.02962 0.92053 0.90377 0.92601 0.99398 0.95686 0.95494 0.90126 0.91225 0.90485 0.76837 0.91218 0.91000 0.85616 0.90975 0.90408 0.91040 0.90861 0.90987 0.90632 0.90931 0.89187 0.95689 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.51 -14.17 8.96 -34.44 -0.31 -14.48 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 9 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 10 N -0.53 -10.53 4.62 -235.47 -1.09 -11.62 16 11 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 12 C 0.12 1.54 6.59 -3.60 -0.02 1.52 16 13 N -0.63 -9.54 3.00 -177.91 -0.53 -10.07 16 14 C 0.71 11.03 8.31 -86.92 -0.72 10.30 16 15 O -0.60 -11.39 15.83 5.29 0.08 -11.30 16 16 N -0.75 -8.73 5.46 -66.42 -0.36 -9.10 16 17 C 0.19 1.96 6.11 -5.20 -0.03 1.93 16 18 C -0.16 -1.28 5.53 -100.73 -0.56 -1.83 16 19 C -0.14 -1.03 10.59 -35.69 -0.38 -1.41 16 20 C -0.10 -0.62 6.81 -26.82 -0.18 -0.80 16 21 C -0.13 -0.71 7.19 -25.01 -0.18 -0.89 16 22 C -0.09 -0.63 6.76 -26.83 -0.18 -0.81 16 23 C 0.13 2.23 6.61 -3.36 -0.02 2.21 16 24 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 27 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 30 H 0.07 0.68 5.64 -51.93 -0.29 0.39 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 3.83 5.96 -40.82 -0.24 3.59 16 33 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 2.16 6.67 -51.93 -0.35 1.82 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -32.47 354.25 -10.67 -43.14 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.47 Total: 0.56 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.74 Total: 2.94 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -1.21 Total: -57.15 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.47 -10.67 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601627817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds