Wall clock time and date at job start Tue Mar 31 2020 06:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47378 * 270.00197 * 3 2 1 5 5 H 1.48506 * 109.46831 * 30.00041 * 3 2 1 6 6 H 1.48503 * 109.47043 * 149.99857 * 3 2 1 7 7 C 1.37880 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99845 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46494 * 119.99858 * 175.19660 * 16 14 13 18 18 C 1.50701 * 109.47331 * 180.02562 * 17 16 14 19 19 C 1.30525 * 124.45166 * 94.69597 * 18 17 16 20 20 C 1.51106 * 111.10672 * 179.88472 * 19 18 17 21 21 C 1.54637 * 104.77628 * 343.92901 * 20 19 18 22 22 C 1.51108 * 124.44707 * 275.00159 * 18 17 16 23 23 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 24 24 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 25 25 H 0.96994 * 120.00262 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46455 * 59.99990 * 9 7 2 27 27 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 28 28 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 29 29 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 30 30 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 31 31 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 32 32 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 33 33 H 1.09000 * 109.47197 * 299.99777 * 17 16 14 34 34 H 1.09003 * 109.47844 * 60.00002 * 17 16 14 35 35 H 1.08004 * 124.44464 * 359.97438 * 19 18 17 36 36 H 1.09000 * 110.52383 * 225.02080 * 20 19 18 37 37 H 1.08993 * 110.29259 * 102.72197 * 20 19 18 38 38 H 1.08993 * 111.03785 * 266.40751 * 21 20 19 39 39 H 1.09006 * 111.03461 * 142.47036 * 21 20 19 40 40 H 1.09005 * 110.38332 * 315.22389 * 22 18 17 41 41 H 1.09000 * 110.38547 * 77.48090 * 22 18 17 42 42 H 1.09002 * 109.63018 * 68.24833 * 23 13 12 43 43 H 1.09001 * 109.63196 * 188.83157 * 23 13 12 44 44 H 1.08993 * 109.49068 * 292.70728 * 24 10 9 45 45 H 1.09000 * 109.49095 * 52.78808 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4500 -2.6251 -0.2397 12 6 5.8897 -4.0829 -0.4125 13 7 5.4266 -4.8518 0.7527 14 6 6.2769 -5.6315 1.4494 15 8 5.8597 -6.3298 2.3530 16 7 7.5888 -5.6411 1.1409 17 6 8.5291 -6.4062 1.9635 18 6 9.9221 -6.2515 1.4098 19 6 10.7886 -5.3688 1.8267 20 6 12.0890 -5.4811 1.0654 21 6 12.0240 -6.8636 0.3755 22 6 10.4970 -7.0935 0.2945 23 6 4.0095 -4.7519 1.1337 24 6 3.6451 -3.2633 1.2491 25 1 -0.4850 0.8400 -0.0004 26 1 3.8751 -0.6804 0.8889 27 1 3.8745 -0.6799 -0.8911 28 1 5.9728 -2.1857 0.6099 29 1 5.6878 -2.0640 -1.1434 30 1 6.9768 -4.1325 -0.4753 31 1 5.4485 -4.4931 -1.3208 32 1 7.9104 -5.1415 0.3742 33 1 8.5022 -6.0339 2.9876 34 1 8.2482 -7.4594 1.9523 35 1 10.6011 -4.6531 2.6136 36 1 12.9370 -5.4374 1.7490 37 1 12.1610 -4.6883 0.3210 38 1 12.5031 -7.6286 0.9864 39 1 12.4672 -6.8254 -0.6196 40 1 10.2625 -8.1460 0.4539 41 1 10.1117 -6.7612 -0.6694 42 1 3.3910 -5.2253 0.3711 43 1 3.8528 -5.2440 2.0936 44 1 4.1929 -2.8150 2.0779 45 1 2.5739 -3.1649 1.4251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601627817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:48 Heat of formation + Delta-G solvation = -18.346825 kcal Electronic energy + Delta-G solvation = -23555.155430 eV Core-core repulsion = 20186.185164 eV Total energy + Delta-G solvation = -3368.970266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50500 -39.73415 -39.02073 -36.01259 -35.75410 -34.39379 -32.20698 -31.12579 -30.15537 -29.24255 -27.38945 -25.94840 -24.52112 -23.54461 -22.15809 -21.69949 -20.71691 -19.62979 -18.96085 -18.60880 -17.49775 -16.79048 -16.69332 -16.32004 -16.27374 -16.04712 -15.71347 -15.35397 -15.16477 -14.96085 -14.82414 -14.45844 -14.04821 -13.60915 -13.53973 -13.22768 -12.87486 -12.76200 -12.58257 -12.50655 -12.32322 -12.25136 -12.14389 -12.02673 -11.95455 -11.91069 -11.86188 -11.47010 -11.25136 -10.77265 -10.29579 -9.75944 -9.61911 -9.05569 -8.27374 -6.31087 0.94870 1.35495 1.37351 1.47284 1.77705 2.06543 2.34887 2.94774 3.04804 3.14747 3.57735 3.67109 3.92779 4.03131 4.09787 4.19120 4.23170 4.23614 4.39595 4.42482 4.49449 4.53194 4.65076 4.69904 4.81625 4.84236 4.88309 4.90239 4.94316 5.00701 5.04389 5.05176 5.10884 5.22440 5.38974 5.41103 5.42103 5.52514 5.58932 5.84371 5.90016 6.00796 6.27426 6.61804 6.75660 6.90988 7.32504 7.47629 8.89049 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002981 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.585811 B = 9389.531686 C =10075.687095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.040 0.960 9 C 0.173 3.827 10 N -0.539 5.539 11 C 0.036 3.964 12 C 0.124 3.876 13 N -0.628 5.628 14 C 0.704 3.296 15 O -0.635 6.635 16 N -0.729 5.729 17 C 0.190 3.810 18 C -0.167 4.167 19 C -0.133 4.133 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.092 4.092 23 C 0.145 3.855 24 C 0.059 3.941 25 H 0.266 0.734 26 H -0.016 1.016 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.019 0.981 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.456 -10.791 -1.144 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.046 3.954 10 N -0.263 5.263 11 C -0.093 4.093 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.405 3.595 15 O -0.517 6.517 16 N -0.387 5.387 17 C 0.067 3.933 18 C -0.167 4.167 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.129 4.129 23 C 0.022 3.978 24 C -0.071 4.071 25 H 0.075 0.925 26 H 0.001 0.999 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.037 0.963 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.808 -11.439 -0.878 29.160 hybrid contribution -0.176 1.538 0.601 1.661 sum 26.632 -9.900 -0.277 28.414 Atomic orbital electron populations 1.70047 1.08163 1.28099 1.52539 1.25852 0.95583 1.03167 0.94407 0.85707 0.79187 0.78612 0.79346 1.18620 1.21110 1.17680 1.21264 0.91073 0.93322 1.49877 0.94158 1.19935 0.94288 0.86036 0.95154 1.61793 1.12993 1.17099 1.34443 1.22598 0.87788 0.97304 1.01611 1.21882 1.00189 0.89757 0.88045 1.47405 1.09387 1.47744 1.31918 1.15995 0.81756 0.80191 0.81536 1.90865 1.77766 1.47233 1.35863 1.45185 1.04432 1.54822 1.34262 1.19728 0.84570 0.95815 0.93222 1.21937 0.94216 1.00416 1.00175 1.23535 0.96055 0.97018 0.98567 1.21435 0.95463 0.98153 0.98903 1.22461 0.95011 0.96829 1.01662 1.21315 0.95533 0.99314 0.96771 1.21542 0.79926 0.94965 1.01401 1.22329 1.00985 0.93666 0.90085 0.92461 0.99876 0.94485 0.95443 0.88140 0.87252 0.89653 0.75369 0.92257 0.91861 0.85601 0.90102 0.89549 0.90847 0.89636 0.91239 0.90180 0.90809 0.89806 0.96320 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 43.27 27.47 68.60 1.88 45.15 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.52 -29.35 8.96 25.60 0.23 -29.12 16 8 H 0.04 2.55 7.37 -2.91 -0.02 2.53 16 9 C 0.17 8.00 3.79 85.56 0.32 8.32 16 10 N -0.54 -21.20 4.62 -898.90 -4.15 -25.35 16 11 C 0.04 1.03 5.62 86.38 0.49 1.51 16 12 C 0.12 2.82 6.59 86.35 0.57 3.39 16 13 N -0.63 -18.24 3.00 -835.04 -2.51 -20.74 16 14 C 0.70 21.12 8.31 179.05 1.49 22.61 16 15 O -0.64 -24.30 15.83 -3.97 -0.06 -24.37 16 16 N -0.73 -15.57 5.46 -482.31 -2.63 -18.20 16 17 C 0.19 3.73 6.11 85.63 0.52 4.26 16 18 C -0.17 -2.37 5.53 -15.87 -0.09 -2.46 16 19 C -0.13 -1.66 10.59 26.26 0.28 -1.38 16 20 C -0.10 -0.93 6.81 30.53 0.21 -0.72 16 21 C -0.12 -1.04 7.19 31.71 0.23 -0.82 16 22 C -0.09 -1.04 6.76 30.53 0.21 -0.84 16 23 C 0.15 4.89 6.61 86.50 0.57 5.46 16 24 C 0.06 2.28 5.47 86.54 0.47 2.76 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H -0.02 -0.78 7.18 -2.39 -0.02 -0.79 16 27 H 0.04 1.64 7.40 -2.39 -0.02 1.62 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 30 H 0.11 1.63 5.64 -2.39 -0.01 1.62 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 6.53 5.96 -92.71 -0.55 5.98 16 33 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.08 2.93 7.09 -2.39 -0.02 2.91 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 3.21 6.67 -2.39 -0.02 3.20 16 Total: -1.00 -72.18 354.25 -0.85 -73.03 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.36 Total: 15.21 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.96 Total: 13.87 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -9.00 Total: -122.89 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Total: -72.18 -0.85 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601627817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.687 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds