Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46699 * 2 1 4 4 C 1.36936 * 119.99860 * 268.80649 * 3 2 1 5 5 H 1.08003 * 119.99889 * 318.13665 * 4 3 2 6 6 C 1.38816 * 120.00103 * 138.14175 * 4 3 2 7 7 N 1.31617 * 120.00192 * 164.45907 * 6 4 3 8 8 Si 1.86798 * 119.99798 * 344.46611 * 6 4 3 9 9 H 1.48505 * 109.47580 * 95.51197 * 8 6 4 10 10 H 1.48498 * 109.46874 * 215.51319 * 8 6 4 11 11 H 1.48506 * 109.47094 * 335.50908 * 8 6 4 12 12 C 1.46504 * 119.99997 * 88.80704 * 3 2 1 13 13 C 1.50698 * 109.47031 * 89.99908 * 12 3 2 14 14 C 1.38167 * 120.02578 * 260.02099 * 13 12 3 15 15 C 1.38242 * 120.05192 * 179.97438 * 14 13 12 16 16 C 1.38288 * 120.11517 * 359.97438 * 15 14 13 17 17 C 1.38116 * 120.05482 * 0.02562 * 16 15 14 18 18 C 1.38712 * 120.02889 * 79.99848 * 13 12 3 19 19 O 1.35900 * 120.05621 * 0.02562 * 18 13 12 20 20 C 1.42893 * 117.00026 * 180.02562 * 19 18 13 21 21 C 1.53002 * 109.47011 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.46800 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46800 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.47332 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47568 * 299.99729 * 1 2 3 27 27 H 1.08999 * 109.47277 * 60.00687 * 1 2 3 28 28 H 1.08997 * 109.47047 * 240.00226 * 2 1 3 29 29 H 1.08995 * 109.46807 * 119.99451 * 2 1 3 30 30 H 0.96997 * 120.00029 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47053 * 330.00038 * 12 3 2 32 32 H 1.08997 * 109.46789 * 209.99729 * 12 3 2 33 33 H 1.07996 * 119.97798 * 0.02562 * 14 13 12 34 34 H 1.08006 * 119.94549 * 180.02562 * 15 14 13 35 35 H 1.08006 * 119.97194 * 180.28054 * 16 15 14 36 36 H 1.08005 * 120.03109 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.47495 * 299.99424 * 20 19 18 38 38 H 1.09002 * 109.47482 * 59.99898 * 20 19 18 39 39 H 1.09000 * 109.47183 * 299.99588 * 21 20 19 40 40 H 1.08999 * 109.47290 * 60.00419 * 21 20 19 41 41 H 1.08998 * 109.47273 * 299.99356 * 22 21 20 42 42 H 1.08997 * 109.47233 * 60.00532 * 22 21 20 43 43 H 1.09006 * 109.47227 * 299.99999 * 23 22 21 44 44 H 1.09004 * 109.47374 * 59.99917 * 23 22 21 45 45 H 0.96696 * 114.00439 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2697 2.0185 -1.1857 5 1 2.7630 1.4907 -1.9884 6 6 1.8906 3.3430 -1.3558 7 7 2.3881 4.0475 -2.3501 8 14 0.6745 4.1257 -0.1734 9 1 1.4148 4.8553 0.8873 10 1 -0.1941 5.0757 -0.9137 11 1 -0.1640 3.0682 0.4462 12 6 2.2375 2.0807 1.2685 13 6 3.6519 1.8471 1.7330 14 6 3.9133 0.8984 2.7028 15 6 5.2107 0.6833 3.1290 16 6 6.2500 1.4162 2.5857 17 6 5.9939 2.3657 1.6160 18 6 4.6925 2.5840 1.1869 19 8 4.4379 3.5178 0.2329 20 6 5.5580 4.2384 -0.2848 21 6 5.0784 5.2369 -1.3402 22 6 6.2779 6.0080 -1.8950 23 6 5.7984 7.0060 -2.9509 24 8 6.9184 7.7267 -3.4686 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.1229 4.9729 -2.4691 31 1 1.5419 1.7018 2.0172 32 1 2.0731 3.1489 1.1274 33 1 3.1036 0.3238 3.1278 34 1 5.4132 -0.0591 3.8869 35 1 7.2633 1.2430 2.9171 36 1 6.8059 2.9376 1.1917 37 1 6.0511 4.7750 0.5259 38 1 6.2611 3.5400 -0.7388 39 1 4.5857 4.7001 -2.1508 40 1 4.3753 5.9354 -0.8866 41 1 6.7710 6.5448 -1.0846 42 1 6.9807 5.3093 -2.3487 43 1 5.3054 6.4689 -3.7612 44 1 5.0952 7.7049 -2.4976 45 1 6.6883 8.3790 -4.1443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -46.519271 kcal Electronic energy + Delta-G solvation = -24805.593472 eV Core-core repulsion = 21403.108806 eV Total energy + Delta-G solvation = -3402.484666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57474 -37.25658 -36.70499 -35.92237 -33.59064 -31.76174 -31.49026 -29.58125 -28.86704 -27.69715 -25.45050 -23.71532 -23.33699 -21.38855 -21.24610 -20.48332 -19.77415 -17.49830 -17.07492 -16.63885 -15.88294 -15.59958 -15.11603 -14.90648 -14.77209 -14.27559 -13.96072 -13.76871 -13.27208 -13.11283 -12.89936 -12.62779 -12.33481 -12.10707 -11.81287 -11.62551 -11.53235 -11.35869 -11.28939 -10.98819 -10.80695 -10.73756 -10.67123 -10.45551 -10.02800 -9.99305 -9.89240 -9.79941 -9.72038 -9.51690 -8.39896 -8.27619 -7.41421 -6.66671 -5.85977 -3.31096 1.87563 2.06516 3.40513 3.51483 3.56875 3.86288 4.31502 4.53767 4.64615 5.22422 5.25420 5.28108 5.33252 5.38478 5.47941 5.54684 5.59131 5.64759 5.69071 5.82396 5.96131 5.97543 5.99147 6.06568 6.09075 6.19689 6.22632 6.27122 6.29865 6.35306 6.53897 6.57842 6.69754 6.70133 6.87092 6.92550 6.98401 7.10139 7.14269 7.23429 7.42514 7.70096 8.19689 8.29117 8.52036 9.09016 9.84968 10.24890 11.29114 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.006543 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.989628 B = 4278.557989 C = 5941.148609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 N -0.598 5.598 4 C -0.249 4.249 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.898 5.898 8 Si 0.872 3.128 9 H -0.287 1.287 10 H -0.308 1.308 11 H -0.270 1.270 12 C 0.178 3.822 13 C -0.119 4.119 14 C -0.085 4.085 15 C -0.173 4.173 16 C -0.095 4.095 17 C -0.223 4.223 18 C 0.158 3.842 19 O -0.262 6.262 20 C 0.071 3.929 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.077 3.923 24 O -0.581 6.581 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.257 0.743 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 0.385 5.157 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 N -0.319 5.319 4 C -0.378 4.378 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.540 5.540 8 Si 0.704 3.296 9 H -0.215 1.215 10 H -0.236 1.236 11 H -0.195 1.195 12 C 0.053 3.947 13 C -0.123 4.123 14 C -0.104 4.104 15 C -0.191 4.191 16 C -0.114 4.114 17 C -0.242 4.242 18 C 0.110 3.890 19 O -0.173 6.173 20 C -0.005 4.005 21 C -0.161 4.161 22 C -0.149 4.149 23 C 0.000 4.000 24 O -0.386 6.386 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.731 0.210 5.359 7.849 hybrid contribution -0.628 0.932 0.363 1.181 sum 5.102 1.142 5.723 7.752 Atomic orbital electron populations 1.22329 0.99751 0.99054 1.01590 1.20828 0.91574 0.86561 0.98853 1.44144 1.74878 1.11391 1.01524 1.18627 1.32593 0.95412 0.91150 0.91065 1.25232 0.96728 0.96784 0.95222 1.69712 1.43772 1.08365 1.32201 0.86989 0.82755 0.78825 0.81029 1.21471 1.23632 1.19488 1.20086 0.88847 0.97512 0.88234 1.20259 0.97960 0.97010 0.97044 1.20779 0.96397 0.96828 0.96370 1.20825 0.93069 1.02282 1.02921 1.20707 0.98348 0.95890 0.96426 1.21182 0.95729 1.04016 1.03283 1.18933 0.92401 0.89258 0.88363 1.86516 1.32951 1.47488 1.50384 1.22554 0.88481 0.93755 0.95702 1.21563 0.96761 0.97355 1.00420 1.21368 0.98561 0.97349 0.97587 1.22186 0.87520 0.93760 0.96579 1.86434 1.35384 1.56537 1.60284 0.94396 0.94119 0.92546 0.93172 0.94712 0.93325 0.93807 0.92032 0.86488 0.87058 0.87014 0.86362 0.94075 0.93025 0.86026 0.91877 0.92232 0.91515 0.92724 0.93729 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.24 37.16 0.38 -2.74 16 2 C 0.15 2.98 6.39 -4.04 -0.03 2.95 16 3 N -0.60 -14.06 2.02 -174.61 -0.35 -14.41 16 4 C -0.25 -6.68 9.00 -15.06 -0.14 -6.81 16 5 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 6 C 0.06 1.63 4.51 -17.43 -0.08 1.55 16 7 N -0.90 -24.58 12.04 55.49 0.67 -23.91 16 8 Si 0.87 22.08 24.78 -169.99 -4.21 17.86 16 9 H -0.29 -7.27 6.79 56.52 0.38 -6.89 16 10 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 11 H -0.27 -6.74 7.06 56.52 0.40 -6.34 16 12 C 0.18 3.97 4.22 -5.19 -0.02 3.95 16 13 C -0.12 -2.45 5.48 -104.47 -0.57 -3.02 16 14 C -0.08 -1.47 9.67 -39.61 -0.38 -1.85 16 15 C -0.17 -2.69 10.04 -39.56 -0.40 -3.08 16 16 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 16 17 C -0.22 -3.95 9.04 -39.44 -0.36 -4.31 16 18 C 0.16 3.29 6.66 -39.22 -0.26 3.03 16 19 O -0.26 -5.85 7.51 -19.43 -0.15 -6.00 16 20 C 0.07 1.31 4.74 37.16 0.18 1.49 16 21 C -0.12 -2.27 5.47 -26.73 -0.15 -2.42 16 22 C -0.11 -1.69 5.58 -26.73 -0.15 -1.84 16 23 C 0.08 1.10 7.05 37.16 0.26 1.36 16 24 O -0.58 -7.76 13.66 -35.23 -0.48 -8.24 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 29 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.04 0.89 7.93 -51.93 -0.41 0.47 16 32 H 0.06 1.51 3.04 -51.93 -0.16 1.36 16 33 H 0.12 1.78 8.04 -52.49 -0.42 1.35 16 34 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.12 1.87 6.30 -52.48 -0.33 1.54 16 37 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 38 H 0.05 0.92 7.66 -51.93 -0.40 0.52 16 39 H 0.12 2.65 6.25 -51.93 -0.32 2.32 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.38 3.18 9.12 45.56 0.42 3.59 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -29.84 358.82 -7.89 -37.73 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.67 Total: 5.20 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.11 Total: -13.65 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.32 Total: -38.32 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.63 Total: -14.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.21 Total: 17.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.84 -7.89 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.786 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds