Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46699 * 2 1 4 4 C 1.36936 * 119.99860 * 268.80649 * 3 2 1 5 5 H 1.08003 * 119.99889 * 318.13665 * 4 3 2 6 6 C 1.38816 * 120.00103 * 138.14175 * 4 3 2 7 7 N 1.31617 * 120.00192 * 164.45907 * 6 4 3 8 8 Si 1.86798 * 119.99798 * 344.46611 * 6 4 3 9 9 H 1.48505 * 109.47580 * 95.51197 * 8 6 4 10 10 H 1.48498 * 109.46874 * 215.51319 * 8 6 4 11 11 H 1.48506 * 109.47094 * 335.50908 * 8 6 4 12 12 C 1.46504 * 119.99997 * 88.80704 * 3 2 1 13 13 C 1.50698 * 109.47031 * 89.99908 * 12 3 2 14 14 C 1.38167 * 120.02578 * 260.02099 * 13 12 3 15 15 C 1.38242 * 120.05192 * 179.97438 * 14 13 12 16 16 C 1.38288 * 120.11517 * 359.97438 * 15 14 13 17 17 C 1.38116 * 120.05482 * 0.02562 * 16 15 14 18 18 C 1.38712 * 120.02889 * 79.99848 * 13 12 3 19 19 O 1.35900 * 120.05621 * 0.02562 * 18 13 12 20 20 C 1.42893 * 117.00026 * 180.02562 * 19 18 13 21 21 C 1.53002 * 109.47011 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.46800 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46800 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.47332 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47568 * 299.99729 * 1 2 3 27 27 H 1.08999 * 109.47277 * 60.00687 * 1 2 3 28 28 H 1.08997 * 109.47047 * 240.00226 * 2 1 3 29 29 H 1.08995 * 109.46807 * 119.99451 * 2 1 3 30 30 H 0.96997 * 120.00029 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47053 * 330.00038 * 12 3 2 32 32 H 1.08997 * 109.46789 * 209.99729 * 12 3 2 33 33 H 1.07996 * 119.97798 * 0.02562 * 14 13 12 34 34 H 1.08006 * 119.94549 * 180.02562 * 15 14 13 35 35 H 1.08006 * 119.97194 * 180.28054 * 16 15 14 36 36 H 1.08005 * 120.03109 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.47495 * 299.99424 * 20 19 18 38 38 H 1.09002 * 109.47482 * 59.99898 * 20 19 18 39 39 H 1.09000 * 109.47183 * 299.99588 * 21 20 19 40 40 H 1.08999 * 109.47290 * 60.00419 * 21 20 19 41 41 H 1.08998 * 109.47273 * 299.99356 * 22 21 20 42 42 H 1.08997 * 109.47233 * 60.00532 * 22 21 20 43 43 H 1.09006 * 109.47227 * 299.99999 * 23 22 21 44 44 H 1.09004 * 109.47374 * 59.99917 * 23 22 21 45 45 H 0.96696 * 114.00439 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2697 2.0185 -1.1857 5 1 2.7630 1.4907 -1.9884 6 6 1.8906 3.3430 -1.3558 7 7 2.3881 4.0475 -2.3501 8 14 0.6745 4.1257 -0.1734 9 1 1.4148 4.8553 0.8873 10 1 -0.1941 5.0757 -0.9137 11 1 -0.1640 3.0682 0.4462 12 6 2.2375 2.0807 1.2685 13 6 3.6519 1.8471 1.7330 14 6 3.9133 0.8984 2.7028 15 6 5.2107 0.6833 3.1290 16 6 6.2500 1.4162 2.5857 17 6 5.9939 2.3657 1.6160 18 6 4.6925 2.5840 1.1869 19 8 4.4379 3.5178 0.2329 20 6 5.5580 4.2384 -0.2848 21 6 5.0784 5.2369 -1.3402 22 6 6.2779 6.0080 -1.8950 23 6 5.7984 7.0060 -2.9509 24 8 6.9184 7.7267 -3.4686 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.1229 4.9729 -2.4691 31 1 1.5419 1.7018 2.0172 32 1 2.0731 3.1489 1.1274 33 1 3.1036 0.3238 3.1278 34 1 5.4132 -0.0591 3.8869 35 1 7.2633 1.2430 2.9171 36 1 6.8059 2.9376 1.1917 37 1 6.0511 4.7750 0.5259 38 1 6.2611 3.5400 -0.7388 39 1 4.5857 4.7001 -2.1508 40 1 4.3753 5.9354 -0.8866 41 1 6.7710 6.5448 -1.0846 42 1 6.9807 5.3093 -2.3487 43 1 5.3054 6.4689 -3.7612 44 1 5.0952 7.7049 -2.4976 45 1 6.6883 8.3790 -4.1443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602448378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -65.188480 kcal Electronic energy + Delta-G solvation = -24806.403030 eV Core-core repulsion = 21403.108806 eV Total energy + Delta-G solvation = -3403.294224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00608 -38.61496 -37.96970 -37.56660 -34.92538 -33.75622 -32.94793 -30.97678 -30.44882 -29.05389 -27.13495 -25.46511 -24.70044 -22.78225 -22.60122 -21.95279 -21.40709 -19.05585 -18.43400 -18.15154 -17.37210 -17.19811 -16.63521 -16.39948 -16.17281 -15.88040 -15.23953 -15.09421 -15.01558 -14.82704 -14.30676 -14.15097 -13.86781 -13.78516 -13.32153 -13.13419 -13.00748 -12.83873 -12.69181 -12.61384 -12.40137 -12.25047 -12.09135 -11.88210 -11.73036 -11.58249 -11.48394 -11.42874 -11.36644 -10.90583 -10.39510 -9.66967 -8.84649 -8.53519 -7.95182 -5.37489 0.53282 0.71653 1.36379 1.42650 1.51351 2.49419 2.57025 2.93262 3.38906 3.42833 3.61838 3.94721 3.98809 4.00547 4.12216 4.23334 4.28184 4.30844 4.41602 4.43228 4.45107 4.58102 4.62137 4.69273 4.75810 4.78283 4.80929 4.85463 4.90444 4.97694 5.02019 5.07545 5.26223 5.28197 5.28551 5.55753 5.59579 5.63151 5.68725 5.76955 6.12230 6.17763 6.36995 6.84243 6.86663 7.18746 7.82877 8.26471 9.21939 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.006543 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.989628 B = 4278.557989 C = 5941.148609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 N -0.609 5.609 4 C -0.239 4.239 5 H 0.029 0.971 6 C 0.031 3.969 7 N -0.919 5.919 8 Si 0.918 3.082 9 H -0.292 1.292 10 H -0.318 1.318 11 H -0.263 1.263 12 C 0.180 3.820 13 C -0.150 4.150 14 C -0.083 4.083 15 C -0.165 4.165 16 C -0.089 4.089 17 C -0.229 4.229 18 C 0.123 3.877 19 O -0.299 6.299 20 C 0.069 3.931 21 C -0.112 4.112 22 C -0.103 4.103 23 C 0.081 3.919 24 O -0.590 6.590 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.255 0.745 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -0.799 7.616 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 N -0.332 5.332 4 C -0.368 4.368 5 H 0.047 0.953 6 C -0.167 4.167 7 N -0.563 5.563 8 Si 0.751 3.249 9 H -0.221 1.221 10 H -0.248 1.248 11 H -0.187 1.187 12 C 0.055 3.945 13 C -0.153 4.153 14 C -0.102 4.102 15 C -0.183 4.183 16 C -0.107 4.107 17 C -0.248 4.248 18 C 0.076 3.924 19 O -0.211 6.211 20 C -0.006 4.006 21 C -0.150 4.150 22 C -0.140 4.140 23 C 0.004 3.996 24 O -0.398 6.398 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.832 -0.988 7.831 10.439 hybrid contribution -0.849 1.224 -0.358 1.532 sum 5.983 0.236 7.473 9.576 Atomic orbital electron populations 1.22207 0.98308 1.00970 1.00280 1.20954 0.92672 0.84895 0.99581 1.44233 1.75560 1.12416 1.00950 1.18264 1.31668 0.95289 0.91628 0.95350 1.25510 0.97811 0.97108 0.96283 1.69816 1.44672 1.08389 1.33419 0.86257 0.81136 0.77998 0.79533 1.22063 1.24766 1.18715 1.19986 0.90889 0.95712 0.87880 1.20261 0.96721 0.99110 0.99228 1.21070 0.98201 0.95750 0.95192 1.21273 0.92031 1.02193 1.02763 1.21187 1.00351 0.94273 0.94861 1.21419 0.94813 1.04770 1.03791 1.19324 0.94012 0.89989 0.89037 1.86452 1.34734 1.48496 1.51437 1.22666 0.87968 0.93707 0.96256 1.21385 0.97542 0.96934 0.99149 1.21266 0.97087 0.97390 0.98278 1.22038 0.87788 0.93752 0.96071 1.86373 1.35038 1.57194 1.61235 0.90851 0.94091 0.95079 0.94208 0.92132 0.93578 0.91920 0.94889 0.84263 0.83248 0.83380 0.85108 0.91860 0.92871 0.89711 0.93413 0.90790 0.91441 0.93724 0.93119 0.75303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 10.24 71.98 0.74 -4.90 16 2 C 0.14 5.66 6.39 86.38 0.55 6.21 16 3 N -0.61 -28.86 2.02 -706.35 -1.42 -30.28 16 4 C -0.24 -13.30 9.00 84.03 0.76 -12.55 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.03 1.74 4.51 84.86 0.38 2.12 16 7 N -0.92 -52.85 12.04 21.65 0.26 -52.59 16 8 Si 0.92 47.06 24.78 68.60 1.70 48.76 16 9 H -0.29 -15.07 6.79 99.48 0.68 -14.39 16 10 H -0.32 -16.60 7.11 99.48 0.71 -15.89 16 11 H -0.26 -12.95 7.06 99.48 0.70 -12.25 16 12 C 0.18 7.96 4.22 85.63 0.36 8.32 16 13 C -0.15 -6.02 5.48 -19.77 -0.11 -6.13 16 14 C -0.08 -2.63 9.67 22.25 0.22 -2.42 16 15 C -0.16 -4.38 10.04 22.28 0.22 -4.16 16 16 C -0.09 -2.43 10.04 22.25 0.22 -2.21 16 17 C -0.23 -7.70 9.04 22.36 0.20 -7.49 16 18 C 0.12 5.10 6.66 22.51 0.15 5.25 16 19 O -0.30 -13.74 7.51 -92.42 -0.69 -14.43 16 20 C 0.07 2.62 4.74 71.98 0.34 2.96 16 21 C -0.11 -4.30 5.47 30.60 0.17 -4.14 16 22 C -0.10 -3.14 5.58 30.60 0.17 -2.97 16 23 C 0.08 2.31 7.05 71.98 0.51 2.82 16 24 O -0.59 -15.09 13.66 -148.98 -2.03 -17.12 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 29 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 32 H 0.03 1.65 3.04 -2.39 -0.01 1.64 16 33 H 0.14 3.67 8.04 -2.91 -0.02 3.64 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.13 3.92 6.30 -2.91 -0.02 3.90 16 37 H 0.06 2.05 7.66 -2.38 -0.02 2.04 16 38 H 0.05 1.93 7.66 -2.39 -0.02 1.91 16 39 H 0.08 3.93 6.25 -2.39 -0.01 3.91 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.40 6.19 9.12 -74.06 -0.68 5.51 16 Total: -1.00 -67.46 358.82 2.94 -64.51 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.25 Total: 20.42 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.88 Total: -19.28 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.16 Total: -82.87 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -2.73 Total: -31.55 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.70 Total: 48.76 kcal Total: -67.46 2.94 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds