Wall clock time and date at job start Tue Mar 31 2020 07:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 113.99980 * 2 1 4 4 C 1.53005 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47066 * 60.63906 * 4 3 2 6 6 C 1.46903 * 111.00045 * 76.75880 * 5 4 3 7 7 C 1.50700 * 109.46875 * 279.85106 * 6 5 4 8 8 H 1.08000 * 120.00216 * 2.30243 * 7 6 5 9 9 C 1.37877 * 119.99933 * 182.30429 * 7 6 5 10 10 N 1.31512 * 120.00090 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99911 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47228 * 90.00314 * 11 9 7 13 13 H 1.48509 * 109.47360 * 210.00223 * 11 9 7 14 14 H 1.48500 * 109.47495 * 330.00195 * 11 9 7 15 15 C 1.46903 * 111.00050 * 200.70947 * 5 4 3 16 16 H 1.09000 * 109.47334 * 182.97887 * 15 5 4 17 17 C 1.52996 * 109.47216 * 302.98021 * 15 5 4 18 18 C 1.50697 * 109.46822 * 62.97983 * 15 5 4 19 19 C 1.38619 * 120.80256 * 254.58851 * 18 15 5 20 20 N 1.32321 * 119.10475 * 179.72321 * 19 18 15 21 21 C 1.31803 * 120.81647 * 0.56214 * 20 19 18 22 22 C 1.50706 * 119.12239 * 179.73098 * 21 20 19 23 23 N 1.31779 * 121.75631 * 359.70986 * 21 20 19 24 24 C 1.32346 * 120.81760 * 0.02562 * 23 21 20 25 25 C 1.50705 * 120.44869 * 179.97438 * 24 23 21 26 26 H 1.09005 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47268 * 299.99651 * 1 2 3 28 28 H 1.09008 * 109.47280 * 59.99965 * 1 2 3 29 29 H 1.08998 * 109.47241 * 60.00044 * 3 2 1 30 30 H 1.08997 * 109.47320 * 300.00259 * 3 2 1 31 31 H 1.09002 * 109.46986 * 300.64198 * 4 3 2 32 32 H 1.09001 * 109.47124 * 180.64270 * 4 3 2 33 33 H 1.08996 * 109.47193 * 159.85058 * 6 5 4 34 34 H 1.09005 * 109.46702 * 39.85032 * 6 5 4 35 35 H 0.96999 * 119.99904 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.47241 * 179.97438 * 17 15 5 37 37 H 1.08997 * 109.47404 * 300.00226 * 17 15 5 38 38 H 1.09000 * 109.47078 * 59.99709 * 17 15 5 39 39 H 1.07998 * 120.44478 * 359.97185 * 19 18 15 40 40 H 1.08997 * 109.46604 * 269.97791 * 22 21 20 41 41 H 1.08998 * 109.46992 * 29.97932 * 22 21 20 42 42 H 1.09002 * 109.46855 * 149.98010 * 22 21 20 43 43 H 1.09002 * 109.46864 * 270.02335 * 25 24 23 44 44 H 1.09003 * 109.46895 * 30.02078 * 25 24 23 45 45 H 1.09000 * 109.47566 * 150.01971 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9694 0.4694 -1.2080 6 6 3.9172 1.3452 -2.3862 7 6 2.4987 1.4279 -2.8881 8 1 1.7084 0.9144 -2.3607 9 6 2.2096 2.1592 -4.0206 10 7 0.9716 2.2319 -4.4583 11 14 3.5763 3.0480 -4.9325 12 1 4.1517 2.1466 -5.9628 13 1 3.0262 4.2617 -5.5882 14 1 4.6376 3.4425 -3.9716 15 6 5.3141 -0.0950 -1.0308 16 1 5.6324 -0.5735 -1.9570 17 6 6.2937 1.0242 -0.6722 18 6 5.2887 -1.1147 0.0785 19 6 5.8306 -0.8255 1.3211 20 7 5.7851 -1.7439 2.2727 21 6 5.2436 -2.9241 2.0467 22 6 5.2176 -3.9438 3.1561 23 7 4.7238 -3.2361 0.8766 24 6 4.7286 -2.3664 -0.1210 25 6 4.1323 -2.7322 -1.4559 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8566 0.6337 0.8833 32 1 3.9787 2.1804 0.0109 33 1 4.5567 0.9387 -3.1697 34 1 4.2650 2.3417 -2.1138 35 1 0.7683 2.7467 -5.2549 36 1 7.2914 0.6055 -0.5403 37 1 6.3121 1.7619 -1.4745 38 1 5.9755 1.5028 0.2540 39 1 6.2803 0.1378 1.5113 40 1 6.1231 -4.5491 3.1143 41 1 5.1659 -3.4332 4.1177 42 1 4.3451 -4.5865 3.0385 43 1 4.9005 -3.1801 -2.0864 44 1 3.3217 -3.4459 -1.3084 45 1 3.7436 -1.8354 -1.9383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602464111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:11 Heat of formation + Delta-G solvation = 12.040251 kcal Electronic energy + Delta-G solvation = -25168.569790 eV Core-core repulsion = 21800.917207 eV Total energy + Delta-G solvation = -3367.652584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07048 -38.26091 -36.59998 -34.22055 -33.65742 -32.38721 -30.76618 -29.17746 -28.93091 -27.13529 -26.79692 -25.53945 -23.94267 -22.26145 -22.08162 -21.16442 -19.25638 -17.51203 -17.10114 -16.00359 -15.75488 -15.54455 -15.10891 -14.83120 -14.58484 -14.22972 -13.85204 -13.65627 -13.33473 -13.03092 -12.98635 -12.83185 -12.43142 -12.29763 -12.23850 -12.14940 -11.80789 -11.72002 -11.65760 -11.37030 -11.14697 -11.03756 -10.76241 -10.45058 -10.26658 -10.22645 -10.13478 -9.83656 -9.31220 -8.95035 -8.86593 -8.73772 -8.49828 -7.41948 -6.08312 -4.04229 1.13465 1.34960 3.23458 3.31376 3.32845 3.89457 4.12736 4.32060 4.37268 4.55376 4.69003 4.80407 4.90222 5.09829 5.21936 5.33792 5.48432 5.51694 5.53360 5.58920 5.76386 5.79243 5.80731 5.89627 5.93101 5.94800 5.98034 6.03555 6.10110 6.15883 6.22217 6.29956 6.31703 6.37967 6.54489 6.67676 6.80871 6.81812 6.88216 7.28860 7.57731 7.80267 7.89040 8.05757 8.35553 8.62844 9.06411 9.53610 11.03699 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.005384 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.527640 B = 5199.050235 C = 5828.882884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.055 3.945 4 C 0.070 3.930 5 N -0.502 5.502 6 C 0.160 3.840 7 C -0.507 4.507 8 H 0.096 0.904 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.124 3.876 16 H 0.093 0.907 17 C -0.189 4.189 18 C -0.170 4.170 19 C 0.145 3.855 20 N -0.530 5.530 21 C 0.304 3.696 22 C -0.080 4.080 23 N -0.524 5.524 24 C 0.211 3.789 25 C -0.114 4.114 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.024 0.976 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.022 0.978 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -5.909 10.419 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.289 6.289 3 C -0.022 4.022 4 C -0.058 4.058 5 N -0.225 5.225 6 C 0.035 3.965 7 C -0.545 4.545 8 H 0.114 0.886 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.696 3.304 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.194 1.194 15 C 0.014 3.986 16 H 0.111 0.889 17 C -0.248 4.248 18 C -0.175 4.175 19 C -0.021 4.021 20 N -0.245 5.245 21 C 0.037 3.963 22 C -0.139 4.139 23 N -0.239 5.239 24 C 0.064 3.936 25 C -0.171 4.171 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.180 0.820 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.592 -7.050 10.915 15.049 hybrid contribution 1.048 2.218 -1.102 2.689 sum 8.641 -4.832 9.813 13.939 Atomic orbital electron populations 1.22591 0.82700 1.01457 0.99405 1.87903 1.18040 1.27757 1.95222 1.22876 0.93027 0.85386 1.00892 1.21965 0.94662 0.96172 0.92989 1.62143 1.19575 1.37209 1.03584 1.20314 0.98854 0.89659 0.87719 1.21236 0.92515 1.30482 1.10226 0.88630 1.24898 0.95063 0.96325 0.96933 1.69875 1.18098 1.41713 1.24100 0.86979 0.83024 0.79818 0.80583 1.20248 1.21379 1.19405 1.20540 0.90178 0.92343 0.95496 0.88896 1.22596 0.99718 1.00141 1.02379 1.21423 1.01360 0.97203 0.97518 1.23153 0.93002 0.97872 0.88043 1.68197 1.18887 1.02685 1.34756 1.23099 0.89934 0.91167 0.92113 1.20480 1.03459 0.95672 0.94259 1.68120 1.18777 1.36188 1.00819 1.21609 0.88645 0.88242 0.95064 1.20940 1.00471 1.05036 0.90635 0.90872 0.95798 0.93484 0.95815 0.88564 0.92524 0.93972 0.96001 0.98909 0.92719 0.92455 0.91481 0.92283 0.82044 0.90178 0.90052 0.89924 0.90831 0.90573 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.01 101.05 1.11 1.74 16 2 O -0.37 -7.58 10.26 -35.23 -0.36 -7.94 16 3 C 0.05 1.07 5.37 37.16 0.20 1.27 16 4 C 0.07 1.27 4.07 -3.83 -0.02 1.26 16 5 N -0.50 -9.49 3.30 -229.47 -0.76 -10.25 16 6 C 0.16 3.49 2.97 -4.97 -0.01 3.48 16 7 C -0.51 -13.11 7.96 -34.44 -0.27 -13.38 16 8 H 0.10 2.70 5.97 -52.49 -0.31 2.39 16 9 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 10 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16 11 Si 0.87 20.29 27.42 -169.99 -4.66 15.63 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.02 6.61 56.52 0.37 -5.64 16 15 C 0.12 1.96 1.69 -68.87 -0.12 1.84 16 16 H 0.09 1.45 7.41 -51.93 -0.39 1.07 16 17 C -0.19 -2.55 7.44 37.16 0.28 -2.28 16 18 C -0.17 -2.67 4.31 -104.36 -0.45 -3.12 16 19 C 0.14 2.14 9.28 -17.20 -0.16 1.98 16 20 N -0.53 -8.23 10.33 -10.72 -0.11 -8.34 16 21 C 0.30 4.63 7.64 -157.20 -1.20 3.43 16 22 C -0.08 -0.88 10.32 36.01 0.37 -0.51 16 23 N -0.52 -8.67 10.27 -6.99 -0.07 -8.74 16 24 C 0.21 3.48 6.82 -82.24 -0.56 2.92 16 25 C -0.11 -1.76 9.60 36.01 0.35 -1.41 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 2.17 5.13 -51.93 -0.27 1.90 16 31 H 0.06 0.99 5.87 -51.93 -0.30 0.68 16 32 H 0.04 0.73 7.04 -51.93 -0.37 0.36 16 33 H 0.02 0.48 7.01 -51.93 -0.36 0.11 16 34 H -0.01 -0.15 6.47 -51.93 -0.34 -0.48 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.07 0.97 7.17 -51.93 -0.37 0.59 16 38 H 0.06 0.75 5.63 -51.93 -0.29 0.46 16 39 H 0.16 2.02 6.12 -52.49 -0.32 1.70 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.11 2.02 6.31 -51.93 -0.33 1.69 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -30.03 350.16 -7.53 -37.56 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.04 Total: 3.09 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.58 Total: -1.02 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.17 Total: -52.60 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.36 Total: -7.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.66 Total: 15.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.03 -7.53 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.605 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds